Wall clock time and date at job start Wed Apr 1 2020 04:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99941 * 2 1 4 4 H 1.48496 * 109.47284 * 270.00603 * 3 2 1 5 5 H 1.48503 * 109.47047 * 30.00222 * 3 2 1 6 6 H 1.48502 * 109.47194 * 149.99926 * 3 2 1 7 7 C 1.37875 * 119.99929 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00689 * 359.97438 * 7 2 1 9 9 C 1.50709 * 119.99504 * 179.97438 * 7 2 1 10 10 N 1.46503 * 109.46533 * 179.97438 * 9 7 2 11 11 C 1.34966 * 125.97629 * 125.00252 * 10 9 7 12 12 C 1.35245 * 107.86047 * 179.70473 * 11 10 9 13 13 C 1.40398 * 107.86609 * 0.42714 * 12 11 10 14 14 N 1.40197 * 125.97243 * 179.82474 * 13 12 11 15 15 C 1.34773 * 119.99863 * 359.72370 * 14 13 12 16 16 O 1.21596 * 119.99977 * 359.97438 * 15 14 13 17 17 N 1.34772 * 119.99922 * 179.97438 * 15 14 13 18 18 C 1.46498 * 120.00144 * 179.97438 * 17 15 14 19 19 C 1.52996 * 109.47521 * 179.97438 * 18 17 15 20 20 C 1.53003 * 109.47724 * 179.97438 * 19 18 17 21 21 N 1.46489 * 109.47486 * 180.02562 * 20 19 18 22 22 C 1.39001 * 120.00245 * 180.02562 * 21 20 19 23 23 C 1.39146 * 119.70404 * 359.97438 * 22 21 20 24 24 C 1.38295 * 119.09401 * 179.97438 * 23 22 21 25 25 C 1.38884 * 118.51011 * 0.02562 * 24 23 22 26 26 C 1.38022 * 119.32992 * 0.27628 * 25 24 23 27 27 N 1.31980 * 120.85123 * 359.44533 * 26 25 24 28 28 N 1.31218 * 108.05414 * 359.57092 * 13 12 11 29 29 H 0.97005 * 120.00224 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.47364 * 60.00292 * 9 7 2 31 31 H 1.08992 * 109.47208 * 299.99852 * 9 7 2 32 32 H 1.08005 * 126.06642 * 359.97438 * 11 10 9 33 33 H 1.07995 * 126.06393 * 180.25532 * 12 11 10 34 34 H 0.97003 * 119.99991 * 179.71781 * 14 13 12 35 35 H 0.97003 * 119.99934 * 0.02562 * 17 15 14 36 36 H 1.09007 * 109.47126 * 60.00102 * 18 17 15 37 37 H 1.08996 * 109.47888 * 300.00497 * 18 17 15 38 38 H 1.09005 * 109.47052 * 60.00408 * 19 18 17 39 39 H 1.08994 * 109.47420 * 300.00749 * 19 18 17 40 40 H 1.09005 * 109.46498 * 60.00099 * 20 19 18 41 41 H 1.08994 * 109.47308 * 300.00848 * 20 19 18 42 42 H 0.97003 * 119.99877 * 0.02562 * 21 20 19 43 43 H 1.08000 * 120.44826 * 0.02676 * 23 22 21 44 44 H 1.08000 * 120.74269 * 180.02562 * 24 23 22 45 45 H 1.08002 * 120.33299 * 179.97438 * 25 24 23 46 46 H 1.07989 * 119.57332 * 179.70393 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 7 3.9999 -2.5752 -0.0010 11 6 4.8545 -3.1141 -0.8959 12 6 5.0607 -4.4045 -0.5474 13 6 4.2954 -4.6685 0.5997 14 7 4.2251 -5.8930 1.2788 15 6 4.9305 -6.9517 0.8341 16 8 5.6276 -6.8451 -0.1564 17 7 4.8632 -8.1286 1.4873 18 6 5.6296 -9.2797 1.0036 19 6 5.3781 -10.4805 1.9178 20 6 6.1780 -11.6828 1.4123 21 7 5.9367 -12.8327 2.2873 22 6 6.5602 -14.0473 2.0266 23 6 7.4120 -14.1644 0.9326 24 6 8.0261 -15.3786 0.6853 25 6 7.7667 -16.4395 1.5432 26 6 6.9058 -16.2546 2.6061 27 7 6.3377 -15.0829 2.8210 28 7 3.6619 -3.5674 0.9281 29 1 -0.4851 0.8401 0.0004 30 1 3.8752 -0.6803 0.8888 31 1 3.8745 -0.6799 -0.8911 32 1 5.2985 -2.6040 -1.7380 33 1 5.6986 -5.1078 -1.0620 34 1 3.6687 -5.9781 2.0689 35 1 4.3068 -8.2138 2.2773 36 1 6.6922 -9.0365 1.0079 37 1 5.3170 -9.5238 -0.0116 38 1 4.3156 -10.7239 1.9139 39 1 5.6911 -10.2362 2.9328 40 1 7.2406 -11.4397 1.4158 41 1 5.8646 -11.9269 0.3973 42 1 5.3418 -12.7464 3.0486 43 1 7.5917 -13.3183 0.2859 44 1 8.6925 -15.4990 -0.1560 45 1 8.2302 -17.4008 1.3775 46 1 6.6975 -17.0782 3.2728 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173347651.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:05 Heat of formation + Delta-G solvation = 101.283253 kcal Electronic energy + Delta-G solvation = -27102.584262 eV Core-core repulsion = 23029.619251 eV Total energy + Delta-G solvation = -4072.965011 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.80148 -40.53892 -39.66473 -37.31545 -35.39761 -34.67797 -33.32320 -32.86298 -32.11818 -31.11082 -29.53956 -29.30803 -27.17993 -25.82052 -24.07046 -22.97076 -22.50616 -22.07187 -21.65396 -20.39665 -19.84254 -18.28469 -17.81930 -17.22198 -17.06830 -16.70400 -16.48422 -16.17179 -15.79477 -15.45887 -15.07891 -14.80117 -14.63187 -14.51486 -14.30891 -14.20533 -13.71533 -13.40981 -13.28242 -13.06493 -12.56349 -12.45892 -12.38650 -12.31177 -12.16964 -11.98928 -11.76335 -11.16159 -10.78719 -10.69345 -10.64974 -10.14479 -10.13297 -10.00434 -9.84342 -9.78871 -9.53084 -9.33033 -8.76738 -8.17719 -8.16517 -7.48471 -6.23614 -4.25855 0.89408 1.06574 2.23108 2.58073 2.68825 3.03807 3.15249 3.22415 3.23257 3.49347 3.54801 3.77820 4.15295 4.22860 4.24445 4.37053 4.38032 4.43483 4.51984 4.73825 4.85081 4.94679 4.97321 5.04350 5.04663 5.21184 5.34612 5.40027 5.55055 5.57696 5.61768 5.69346 5.90391 6.10342 6.14472 6.20125 6.33336 6.45993 6.55191 6.57075 6.71070 6.92498 7.10055 7.27616 7.42310 7.77240 7.81587 7.86358 8.33873 8.52437 8.58792 8.86340 9.31494 10.89124 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.043280 B = 0.001268 C = 0.001245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.802068 B =22081.521147 C =22489.586659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.077 3.923 3 Si 0.873 3.127 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.535 4.535 8 H 0.085 0.915 9 C 0.232 3.768 10 N -0.320 5.320 11 C 0.051 3.949 12 C -0.282 4.282 13 C 0.278 3.722 14 N -0.643 5.643 15 C 0.714 3.286 16 O -0.567 6.567 17 N -0.745 5.745 18 C 0.145 3.855 19 C -0.144 4.144 20 C 0.132 3.868 21 N -0.726 5.726 22 C 0.402 3.598 23 C -0.240 4.240 24 C -0.034 4.034 25 C -0.238 4.238 26 C 0.148 3.852 27 N -0.548 5.548 28 N -0.300 5.300 29 H 0.268 0.732 30 H 0.042 0.958 31 H 0.049 0.951 32 H 0.169 0.831 33 H 0.163 0.837 34 H 0.408 0.592 35 H 0.398 0.602 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.405 0.595 43 H 0.132 0.868 44 H 0.132 0.868 45 H 0.130 0.870 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.938 -29.089 3.865 33.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.127 4.127 3 Si 0.699 3.301 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.573 4.573 8 H 0.103 0.897 9 C 0.113 3.887 10 N -0.102 5.102 11 C -0.099 4.099 12 C -0.314 4.314 13 C 0.023 3.977 14 N -0.293 5.293 15 C 0.413 3.587 16 O -0.442 6.442 17 N -0.402 5.402 18 C 0.020 3.980 19 C -0.182 4.182 20 C 0.006 3.994 21 N -0.359 5.359 22 C 0.167 3.833 23 C -0.265 4.265 24 C -0.060 4.060 25 C -0.261 4.261 26 C -0.010 4.010 27 N -0.265 5.265 28 N -0.131 5.131 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.186 0.814 33 H 0.180 0.820 34 H 0.243 0.757 35 H 0.232 0.768 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.241 0.759 43 H 0.150 0.850 44 H 0.150 0.850 45 H 0.148 0.852 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 15.068 -27.931 4.322 32.030 hybrid contribution 0.529 0.414 -0.205 0.703 sum 15.598 -27.517 4.117 31.897 Atomic orbital electron populations 1.69872 1.06170 1.27287 1.49207 1.24827 0.94856 0.98783 0.94252 0.86910 0.80444 0.83843 0.78926 1.19704 1.20539 1.18860 1.21119 0.87828 0.95703 1.52625 0.89652 1.20038 0.97422 0.73047 0.98171 1.48587 1.32693 1.10222 1.18685 1.22556 0.95920 0.94704 0.96683 1.21529 1.11350 0.96769 1.01721 1.18789 0.98675 0.85855 0.94342 1.41369 1.49121 1.07398 1.31408 1.15585 0.80456 0.79725 0.82926 1.90873 1.43870 1.82960 1.26546 1.44941 1.52436 1.09875 1.32972 1.21001 0.96446 0.82990 0.97589 1.21946 1.01714 0.93910 1.00657 1.21242 1.00090 0.84114 0.93912 1.44433 1.51212 1.07377 1.32861 1.18356 0.89155 0.86258 0.89556 1.21447 1.03949 1.00045 1.01021 1.21353 0.95401 0.91904 0.97319 1.21834 1.04604 1.00559 0.99069 1.22398 0.90827 0.93065 0.94703 1.67154 1.28388 1.00080 1.30907 1.77387 1.24009 0.95580 1.16089 0.92192 0.94068 0.93322 0.81412 0.82001 0.75739 0.76815 0.90992 0.90950 0.90168 0.90205 0.91297 0.91271 0.75916 0.85024 0.85029 0.85199 0.82864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.55 13.96 55.43 0.77 -25.78 16 2 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.87 20.05 27.47 -169.99 -4.67 15.38 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.26 -5.74 6.54 56.52 0.37 -5.37 16 7 C -0.53 -15.06 9.79 -34.44 -0.34 -15.40 16 8 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 9 C 0.23 5.49 5.33 -5.19 -0.03 5.46 16 10 N -0.32 -7.22 3.67 -62.56 -0.23 -7.45 16 11 C 0.05 0.97 11.44 -17.24 -0.20 0.78 16 12 C -0.28 -5.47 9.61 -39.84 -0.38 -5.86 16 13 C 0.28 5.49 8.11 -154.35 -1.25 4.24 16 14 N -0.64 -9.65 5.46 -15.51 -0.08 -9.73 16 15 C 0.71 9.88 8.53 -86.93 -0.74 9.13 16 16 O -0.57 -9.75 13.47 5.28 0.07 -9.68 16 17 N -0.75 -6.42 5.56 -65.23 -0.36 -6.78 16 18 C 0.14 0.97 5.67 -4.04 -0.02 0.95 16 19 C -0.14 -0.56 5.44 -26.73 -0.15 -0.71 16 20 C 0.13 0.58 4.89 -4.05 -0.02 0.56 16 21 N -0.73 -4.49 5.73 -60.43 -0.35 -4.84 16 22 C 0.40 3.30 7.65 -155.02 -1.19 2.12 16 23 C -0.24 -1.67 9.33 -39.22 -0.37 -2.03 16 24 C -0.03 -0.20 10.17 -39.32 -0.40 -0.60 16 25 C -0.24 -1.41 10.10 -39.42 -0.40 -1.81 16 26 C 0.15 1.04 11.17 -17.57 -0.20 0.84 16 27 N -0.55 -5.00 10.39 -12.44 -0.13 -5.13 16 28 N -0.30 -6.83 12.42 31.44 0.39 -6.44 16 29 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.04 0.97 7.20 -51.93 -0.37 0.60 16 31 H 0.05 1.04 7.50 -51.93 -0.39 0.65 16 32 H 0.17 2.54 8.06 -52.48 -0.42 2.11 16 33 H 0.16 3.07 5.91 -52.49 -0.31 2.75 16 34 H 0.41 4.91 8.84 -40.82 -0.36 4.54 16 35 H 0.40 2.29 8.49 -40.82 -0.35 1.94 16 36 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.07 0.29 7.93 -51.93 -0.41 -0.12 16 41 H 0.07 0.30 7.93 -51.93 -0.41 -0.11 16 42 H 0.41 2.29 8.60 -40.82 -0.35 1.94 16 43 H 0.13 0.71 6.71 -52.49 -0.35 0.35 16 44 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 45 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 46 H 0.15 0.68 8.06 -52.49 -0.42 0.25 16 LS Contribution 391.83 15.07 5.90 5.90 Total: -1.00 -36.79 391.83 -10.73 -47.52 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -6.28 Total: 7.32 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: -5.77 Total: -0.29 kcal Atomic # 7 Polarization: -66.17 SS G_CDS: 0.01 Total: -66.15 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.07 Total: -9.68 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -4.67 Total: 15.38 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.79 -10.73 -47.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173347651.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.799 kcal (2) G-P(sol) polarization free energy of solvation -36.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds