Wall clock time and date at job start Wed Apr 1 2020 03:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46883 * 2 1 4 4 C 1.47200 * 109.46737 * 240.00259 * 2 1 3 5 5 N 2.60803 * 109.46918 * 239.99926 * 2 1 3 6 6 C 1.52999 * 109.46909 * 120.00034 * 2 1 3 7 7 N 1.46498 * 109.46869 * 186.39151 * 6 2 1 8 8 C 1.46503 * 119.99816 * 77.37397 * 7 6 2 9 9 S 1.65603 * 120.00016 * 257.37801 * 7 6 2 10 10 O 1.42103 * 106.40065 * 203.54224 * 9 7 6 11 11 O 1.42100 * 106.39965 * 336.45582 * 9 7 6 12 12 N 1.65595 * 107.22061 * 90.00096 * 9 7 6 13 13 C 1.46504 * 120.00191 * 64.99861 * 12 9 7 14 14 C 1.53002 * 109.47080 * 165.00238 * 13 12 9 15 15 C 1.53039 * 109.45653 * 295.02741 * 14 13 12 16 16 C 1.53196 * 109.30971 * 178.60137 * 15 14 13 17 17 N 1.46934 * 108.76282 * 54.65328 * 16 15 14 18 18 C 1.36942 * 120.62381 * 126.40390 * 17 16 15 19 19 H 1.07988 * 120.00504 * 330.65522 * 18 17 16 20 20 C 1.38819 * 119.99175 * 150.65865 * 18 17 16 21 21 N 1.31620 * 120.00188 * 343.62591 * 20 18 17 22 22 Si 1.86803 * 119.99609 * 163.63064 * 20 18 17 23 23 H 1.48501 * 109.47064 * 59.99509 * 22 20 18 24 24 H 1.48496 * 109.47015 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46924 * 299.99931 * 22 20 18 26 26 C 1.46920 * 118.73948 * 306.38346 * 17 16 15 27 27 C 1.53037 * 109.45919 * 174.97280 * 14 13 12 28 28 H 1.08995 * 109.47333 * 175.61615 * 1 2 3 29 29 H 1.09001 * 109.47318 * 295.61922 * 1 2 3 30 30 H 1.09006 * 109.47068 * 55.61712 * 1 2 3 31 31 H 1.09007 * 109.47091 * 306.38875 * 6 2 1 32 32 H 1.08994 * 109.46809 * 66.39239 * 6 2 1 33 33 H 1.09005 * 109.47109 * 86.01842 * 8 7 6 34 34 H 1.09000 * 109.47073 * 206.01506 * 8 7 6 35 35 H 1.08989 * 109.47608 * 326.01560 * 8 7 6 36 36 H 0.96996 * 120.00138 * 245.00146 * 12 9 7 37 37 H 1.08998 * 109.46942 * 285.00140 * 13 12 9 38 38 H 1.08997 * 109.47036 * 44.99823 * 13 12 9 39 39 H 1.08996 * 109.46110 * 55.00174 * 14 13 12 40 40 H 1.09003 * 109.50001 * 298.56368 * 15 14 13 41 41 H 1.08994 * 109.50109 * 58.66779 * 15 14 13 42 42 H 1.08999 * 109.59601 * 294.86878 * 16 15 14 43 43 H 1.08991 * 109.70292 * 174.50216 * 16 15 14 44 44 H 0.96998 * 119.99610 * 179.97438 * 21 20 18 45 45 H 1.08993 * 109.59052 * 293.82017 * 26 17 16 46 46 H 1.08999 * 109.70350 * 173.46365 * 26 17 16 47 47 H 1.09007 * 109.50015 * 301.33959 * 27 14 13 48 48 H 1.09004 * 109.49665 * 61.39839 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0206 -0.6939 -1.2019 5 7 2.3993 -1.2295 -2.1295 6 6 2.0400 -0.7213 1.2492 7 7 3.4968 -0.5895 1.3286 8 6 4.0948 0.6664 1.7884 9 16 4.4678 -1.8602 0.8985 10 8 5.7036 -1.6671 1.5728 11 8 3.6795 -3.0339 1.0417 12 7 4.7885 -1.7066 -0.7189 13 6 5.5646 -0.5637 -1.2065 14 6 6.0353 -0.8395 -2.6359 15 6 7.0095 -2.0197 -2.6331 16 6 7.4515 -2.3152 -4.0698 17 7 7.9965 -1.0845 -4.6592 18 6 9.2446 -1.0742 -5.2226 19 1 10.0072 -1.7465 -4.8583 20 6 9.5295 -0.1993 -6.2621 21 7 8.5491 0.3819 -6.9205 22 14 11.3042 0.1530 -6.7264 23 1 11.9710 -1.1115 -7.1286 24 1 11.3384 1.1123 -7.8594 25 1 12.0142 0.7378 -5.5605 26 6 7.1768 0.1345 -4.6328 27 6 6.7376 0.4022 -3.1899 28 1 -0.3634 -1.0246 -0.0785 29 1 -0.3634 0.4443 0.9266 30 1 -0.3633 0.5804 -0.8482 31 1 1.5862 -0.2777 2.1356 32 1 1.7730 -1.7766 1.1938 33 1 4.1564 0.6625 2.8767 34 1 5.0954 0.7676 1.3682 35 1 3.4776 1.5035 1.4625 36 1 4.4625 -2.3733 -1.3434 37 1 4.9410 0.3302 -1.1954 38 1 6.4302 -0.4108 -0.5620 39 1 5.1756 -1.0797 -3.2614 40 1 7.8812 -1.7705 -2.0280 41 1 6.5160 -2.8979 -2.2167 42 1 6.5951 -2.6519 -4.6539 43 1 8.2186 -3.0895 -4.0664 44 1 8.7483 0.9935 -7.6466 45 1 6.2980 -0.0024 -5.2628 46 1 7.7613 0.9783 -4.9994 47 1 6.0506 1.2483 -3.1697 48 1 7.6116 0.6288 -2.5791 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336940406.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:52 Heat of formation + Delta-G solvation = -35.001327 kcal Electronic energy + Delta-G solvation = -29720.112427 eV Core-core repulsion = 25744.388872 eV Total energy + Delta-G solvation = -3975.723554 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -38.50564 -38.10660 -37.35625 -36.14063 -35.94114 -35.18350 -33.48457 -32.61788 -30.59804 -29.59387 -28.03642 -26.46633 -25.40687 -23.86360 -23.57530 -22.09402 -21.11677 -19.69769 -19.05224 -18.33320 -17.78939 -17.53134 -16.64450 -16.56124 -15.76020 -15.19181 -14.83862 -14.63466 -14.59831 -14.16304 -13.87094 -13.74534 -13.46838 -13.40771 -13.20620 -13.07854 -12.94661 -12.81584 -12.72202 -12.36532 -12.20769 -12.19440 -12.09005 -11.99712 -11.97285 -11.80914 -11.66480 -11.42535 -11.29562 -10.94669 -10.68432 -10.45990 -10.19139 -10.17454 -9.87043 -9.67293 -9.57970 -9.39923 -9.30232 -8.43137 -6.60179 -5.75156 -3.18301 0.41206 2.52213 2.58042 2.69694 3.38201 3.40665 3.45755 3.47666 3.55685 4.15255 4.29510 4.33765 4.52998 4.58100 4.69915 4.91366 4.99217 5.08415 5.18073 5.20632 5.21337 5.35405 5.37030 5.42238 5.46455 5.48257 5.56171 5.68005 5.68663 5.87955 5.96248 6.06293 6.16177 6.25903 6.38920 6.57886 6.63774 6.74028 6.85134 6.89187 6.97299 7.07979 7.38224 7.40334 7.68398 7.83293 8.50184 9.26033 9.89316 10.47482 11.33381 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.018885 B = 0.002863 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.271814 B = 9778.417490 C =10346.138145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.015 4.015 3 H 0.118 0.882 4 C 0.182 3.818 5 N -0.399 5.399 6 C 0.122 3.878 7 N -1.013 6.013 8 C 0.090 3.910 9 S 2.781 3.219 10 O -0.971 6.971 11 O -0.980 6.980 12 N -1.120 6.120 13 C 0.127 3.873 14 C -0.081 4.081 15 C -0.126 4.126 16 C 0.145 3.855 17 N -0.592 5.592 18 C -0.252 4.252 19 H 0.064 0.936 20 C 0.002 3.998 21 N -0.904 5.904 22 Si 0.903 3.097 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.284 1.284 26 C 0.175 3.825 27 C -0.133 4.133 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.419 0.581 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.048 0.952 42 H 0.016 0.984 43 H 0.052 0.948 44 H 0.253 0.747 45 H 0.016 0.984 46 H 0.085 0.915 47 H 0.047 0.953 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.287 3.459 19.890 27.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.038 4.038 3 H 0.135 0.865 4 C -0.137 4.137 5 N -0.074 5.074 6 C -0.005 4.005 7 N -0.852 5.852 8 C -0.055 4.055 9 S 2.788 3.212 10 O -0.955 6.955 11 O -0.964 6.964 12 N -0.884 5.884 13 C 0.001 3.999 14 C -0.101 4.101 15 C -0.166 4.166 16 C 0.019 3.981 17 N -0.315 5.315 18 C -0.382 4.382 19 H 0.081 0.919 20 C -0.196 4.196 21 N -0.548 5.548 22 Si 0.732 3.268 23 H -0.209 1.209 24 H -0.217 1.217 25 H -0.210 1.210 26 C 0.049 3.951 27 C -0.173 4.173 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.254 0.746 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.033 0.967 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.034 0.966 46 H 0.103 0.897 47 H 0.066 0.934 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.278 2.222 19.065 25.825 hybrid contribution 0.438 0.590 -0.568 0.929 sum -16.840 2.813 18.497 25.172 Atomic orbital electron populations 1.21769 0.91173 1.03674 1.03712 1.19393 0.97372 0.99961 0.87111 0.86468 1.29104 0.94620 0.94925 0.95010 1.81291 1.07228 1.08475 1.10394 1.21490 0.79433 1.02902 0.96653 1.57952 1.15966 1.30415 1.80843 1.21538 0.98623 0.85070 1.00295 1.02046 0.73321 0.72628 0.73176 1.93629 1.42924 1.85834 1.73073 1.93602 1.70954 1.45853 1.86006 1.55905 1.68695 1.36117 1.27645 1.21427 0.94095 0.86253 0.98100 1.21213 0.98578 0.97433 0.92910 1.22042 0.98280 0.96454 0.99795 1.20900 0.96348 0.90060 0.90809 1.44028 1.16160 1.03950 1.67339 1.19146 0.87358 1.20636 1.11022 0.91871 1.25074 0.97270 1.01564 0.95721 1.70027 1.29941 1.32710 1.22132 0.86371 0.84924 0.77887 0.77582 1.20918 1.21673 1.21027 1.20697 0.94016 0.91012 0.89412 1.22202 0.98829 0.94934 1.01382 0.91402 0.90253 0.91214 0.87964 0.87959 0.91989 0.90602 0.90802 0.74577 0.92814 0.90756 0.90924 0.92215 0.93322 0.96658 0.92940 0.93662 0.96567 0.89716 0.93420 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.40 9.15 37.16 0.34 -0.06 16 2 C -0.01 -0.07 2.89 -93.41 -0.27 -0.34 16 3 H 0.12 0.33 7.42 -51.93 -0.39 -0.05 16 4 C 0.18 1.70 13.17 -20.76 -0.27 1.43 16 5 N -0.40 -5.11 16.97 42.15 0.72 -4.39 16 6 C 0.12 0.62 5.10 -4.04 -0.02 0.60 16 7 N -1.01 -7.74 3.03 -121.76 -0.37 -8.11 16 8 C 0.09 0.51 10.30 59.85 0.62 1.13 16 9 S 2.78 33.88 5.84 -107.50 -0.63 33.25 16 10 O -0.97 -14.73 16.60 -57.17 -0.95 -15.68 16 11 O -0.98 -14.12 16.65 -57.17 -0.95 -15.07 16 12 N -1.12 -14.14 3.78 -10.61 -0.04 -14.18 16 13 C 0.13 1.68 5.64 -4.04 -0.02 1.66 16 14 C -0.08 -1.36 2.18 -90.58 -0.20 -1.55 16 15 C -0.13 -2.31 5.26 -26.61 -0.14 -2.45 16 16 C 0.15 3.20 6.52 -3.70 -0.02 3.17 16 17 N -0.59 -15.24 2.99 -172.32 -0.51 -15.75 16 18 C -0.25 -7.09 9.57 -15.05 -0.14 -7.23 16 19 H 0.06 1.75 7.88 -52.49 -0.41 1.34 16 20 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 21 N -0.90 -26.63 11.25 55.49 0.62 -26.00 16 22 Si 0.90 22.05 29.58 -169.99 -5.03 17.02 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 C 0.17 4.21 5.29 -3.72 -0.02 4.19 16 27 C -0.13 -2.50 5.36 -26.61 -0.14 -2.64 16 28 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.08 0.05 8.14 -51.93 -0.42 -0.38 16 30 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.10 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.10 0.65 6.81 -51.93 -0.35 0.30 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.52 7.65 -51.93 -0.40 0.12 16 35 H 0.07 0.21 7.39 -51.94 -0.38 -0.17 16 36 H 0.42 5.55 7.59 -34.47 -0.26 5.29 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 1.00 7.75 -51.93 -0.40 0.60 16 39 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.05 0.80 7.50 -51.93 -0.39 0.41 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 44 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 45 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.08 2.27 6.14 -51.93 -0.32 1.96 16 47 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 393.42 15.07 5.93 5.93 Total: -1.00 -36.22 393.42 -9.52 -45.74 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -7.93 Total: -0.63 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -0.38 Total: -2.12 kcal Atomic # 7 Polarization: -68.86 SS G_CDS: 0.42 Total: -68.44 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: -1.90 Total: -30.76 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal Atomic # 16 Polarization: 33.88 SS G_CDS: -0.63 Total: 33.25 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.22 -9.52 -45.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336940406.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.743 kcal (2) G-P(sol) polarization free energy of solvation -36.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds