Wall clock time and date at job start Wed Apr 1 2020 03:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46883 * 2 1 4 4 C 1.47200 * 109.46737 * 240.00259 * 2 1 3 5 5 N 2.60803 * 109.46918 * 239.99926 * 2 1 3 6 6 C 1.52999 * 109.46909 * 120.00034 * 2 1 3 7 7 N 1.46498 * 109.46869 * 186.39151 * 6 2 1 8 8 C 1.46503 * 119.99816 * 77.37397 * 7 6 2 9 9 S 1.65603 * 120.00016 * 257.37801 * 7 6 2 10 10 O 1.42103 * 106.40065 * 203.54224 * 9 7 6 11 11 O 1.42100 * 106.39965 * 336.45582 * 9 7 6 12 12 N 1.65595 * 107.22061 * 90.00096 * 9 7 6 13 13 C 1.46504 * 120.00191 * 64.99861 * 12 9 7 14 14 C 1.53002 * 109.47080 * 165.00238 * 13 12 9 15 15 C 1.53039 * 109.45653 * 295.02741 * 14 13 12 16 16 C 1.53196 * 109.30971 * 178.60137 * 15 14 13 17 17 N 1.46934 * 108.76282 * 54.65328 * 16 15 14 18 18 C 1.36942 * 120.62381 * 126.40390 * 17 16 15 19 19 H 1.07988 * 120.00504 * 330.65522 * 18 17 16 20 20 C 1.38819 * 119.99175 * 150.65865 * 18 17 16 21 21 N 1.31620 * 120.00188 * 343.62591 * 20 18 17 22 22 Si 1.86803 * 119.99609 * 163.63064 * 20 18 17 23 23 H 1.48501 * 109.47064 * 59.99509 * 22 20 18 24 24 H 1.48496 * 109.47015 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46924 * 299.99931 * 22 20 18 26 26 C 1.46920 * 118.73948 * 306.38346 * 17 16 15 27 27 C 1.53037 * 109.45919 * 174.97280 * 14 13 12 28 28 H 1.08995 * 109.47333 * 175.61615 * 1 2 3 29 29 H 1.09001 * 109.47318 * 295.61922 * 1 2 3 30 30 H 1.09006 * 109.47068 * 55.61712 * 1 2 3 31 31 H 1.09007 * 109.47091 * 306.38875 * 6 2 1 32 32 H 1.08994 * 109.46809 * 66.39239 * 6 2 1 33 33 H 1.09005 * 109.47109 * 86.01842 * 8 7 6 34 34 H 1.09000 * 109.47073 * 206.01506 * 8 7 6 35 35 H 1.08989 * 109.47608 * 326.01560 * 8 7 6 36 36 H 0.96996 * 120.00138 * 245.00146 * 12 9 7 37 37 H 1.08998 * 109.46942 * 285.00140 * 13 12 9 38 38 H 1.08997 * 109.47036 * 44.99823 * 13 12 9 39 39 H 1.08996 * 109.46110 * 55.00174 * 14 13 12 40 40 H 1.09003 * 109.50001 * 298.56368 * 15 14 13 41 41 H 1.08994 * 109.50109 * 58.66779 * 15 14 13 42 42 H 1.08999 * 109.59601 * 294.86878 * 16 15 14 43 43 H 1.08991 * 109.70292 * 174.50216 * 16 15 14 44 44 H 0.96998 * 119.99610 * 179.97438 * 21 20 18 45 45 H 1.08993 * 109.59052 * 293.82017 * 26 17 16 46 46 H 1.08999 * 109.70350 * 173.46365 * 26 17 16 47 47 H 1.09007 * 109.50015 * 301.33959 * 27 14 13 48 48 H 1.09004 * 109.49665 * 61.39839 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0206 -0.6939 -1.2019 5 7 2.3993 -1.2295 -2.1295 6 6 2.0400 -0.7213 1.2492 7 7 3.4968 -0.5895 1.3286 8 6 4.0948 0.6664 1.7884 9 16 4.4678 -1.8602 0.8985 10 8 5.7036 -1.6671 1.5728 11 8 3.6795 -3.0339 1.0417 12 7 4.7885 -1.7066 -0.7189 13 6 5.5646 -0.5637 -1.2065 14 6 6.0353 -0.8395 -2.6359 15 6 7.0095 -2.0197 -2.6331 16 6 7.4515 -2.3152 -4.0698 17 7 7.9965 -1.0845 -4.6592 18 6 9.2446 -1.0742 -5.2226 19 1 10.0072 -1.7465 -4.8583 20 6 9.5295 -0.1993 -6.2621 21 7 8.5491 0.3819 -6.9205 22 14 11.3042 0.1530 -6.7264 23 1 11.9710 -1.1115 -7.1286 24 1 11.3384 1.1123 -7.8594 25 1 12.0142 0.7378 -5.5605 26 6 7.1768 0.1345 -4.6328 27 6 6.7376 0.4022 -3.1899 28 1 -0.3634 -1.0246 -0.0785 29 1 -0.3634 0.4443 0.9266 30 1 -0.3633 0.5804 -0.8482 31 1 1.5862 -0.2777 2.1356 32 1 1.7730 -1.7766 1.1938 33 1 4.1564 0.6625 2.8767 34 1 5.0954 0.7676 1.3682 35 1 3.4776 1.5035 1.4625 36 1 4.4625 -2.3733 -1.3434 37 1 4.9410 0.3302 -1.1954 38 1 6.4302 -0.4108 -0.5620 39 1 5.1756 -1.0797 -3.2614 40 1 7.8812 -1.7705 -2.0280 41 1 6.5160 -2.8979 -2.2167 42 1 6.5951 -2.6519 -4.6539 43 1 8.2186 -3.0895 -4.0664 44 1 8.7483 0.9935 -7.6466 45 1 6.2980 -0.0024 -5.2628 46 1 7.7613 0.9783 -4.9994 47 1 6.0506 1.2483 -3.1697 48 1 7.6116 0.6288 -2.5791 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336940406.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:51 Heat of formation + Delta-G solvation = -61.219907 kcal Electronic energy + Delta-G solvation = -29721.249349 eV Core-core repulsion = 25744.388872 eV Total energy + Delta-G solvation = -3976.860477 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.69177 -39.01984 -38.38794 -37.04392 -36.85836 -36.57767 -34.37463 -33.92028 -32.37017 -31.37667 -28.41674 -28.09990 -25.82604 -25.59680 -24.06370 -23.79167 -22.74031 -20.93894 -20.32446 -19.11659 -18.75946 -18.36349 -18.32990 -17.44297 -16.88415 -16.44683 -15.86446 -15.71042 -15.60092 -15.46566 -15.34512 -14.92514 -14.84540 -14.33859 -14.22439 -14.07479 -13.90123 -13.79206 -13.64557 -13.49296 -13.40550 -13.27020 -13.24271 -13.04757 -12.80157 -12.69743 -12.57551 -12.56805 -12.43700 -12.33492 -12.23913 -12.02733 -11.88757 -11.81977 -11.57999 -11.22000 -11.15909 -10.56365 -10.46139 -10.09117 -8.68953 -7.89733 -5.37022 -0.48686 1.44716 1.46949 1.54299 1.80815 1.90001 1.98247 2.47866 2.49345 3.07435 3.24075 3.28286 3.66883 3.76900 3.81150 3.93213 3.93852 4.04412 4.23823 4.37942 4.44662 4.48835 4.52054 4.62110 4.63426 4.72382 4.77931 4.82495 4.90830 4.92458 5.00259 5.03903 5.08132 5.10709 5.19190 5.24720 5.26049 5.28402 5.37245 5.46132 5.50838 5.57847 5.62979 5.75223 5.95679 6.37290 6.74142 7.13003 7.83428 8.36653 9.16388 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.018885 B = 0.002863 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.271814 B = 9778.417490 C =10346.138145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.013 4.013 3 H 0.148 0.852 4 C 0.201 3.799 5 N -0.469 5.469 6 C 0.117 3.883 7 N -1.003 6.003 8 C 0.080 3.920 9 S 2.792 3.208 10 O -1.005 7.005 11 O -1.007 7.007 12 N -1.124 6.124 13 C 0.138 3.862 14 C -0.073 4.073 15 C -0.116 4.116 16 C 0.141 3.859 17 N -0.610 5.610 18 C -0.268 4.268 19 H 0.062 0.938 20 C -0.049 4.049 21 N -0.935 5.935 22 Si 0.970 3.030 23 H -0.277 1.277 24 H -0.291 1.291 25 H -0.276 1.276 26 C 0.180 3.820 27 C -0.120 4.120 28 H 0.057 0.943 29 H 0.111 0.889 30 H 0.067 0.933 31 H 0.148 0.852 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.111 0.889 36 H 0.415 0.585 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.068 0.932 42 H 0.006 0.994 43 H 0.048 0.952 44 H 0.251 0.749 45 H -0.011 1.011 46 H 0.053 0.947 47 H 0.075 0.925 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.544 5.182 22.575 30.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.036 4.036 3 H 0.165 0.835 4 C -0.116 4.116 5 N -0.146 5.146 6 C -0.009 4.009 7 N -0.845 5.845 8 C -0.065 4.065 9 S 2.800 3.200 10 O -0.988 6.988 11 O -0.991 6.991 12 N -0.885 5.885 13 C 0.012 3.988 14 C -0.093 4.093 15 C -0.155 4.155 16 C 0.015 3.985 17 N -0.334 5.334 18 C -0.399 4.399 19 H 0.080 0.920 20 C -0.244 4.244 21 N -0.580 5.580 22 Si 0.797 3.203 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.202 1.202 26 C 0.054 3.946 27 C -0.160 4.160 28 H 0.076 0.924 29 H 0.130 0.870 30 H 0.086 0.914 31 H 0.166 0.834 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.130 0.870 36 H 0.250 0.750 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.024 0.976 43 H 0.067 0.933 44 H 0.060 0.940 45 H 0.007 0.993 46 H 0.071 0.929 47 H 0.093 0.907 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.540 3.926 21.773 28.866 hybrid contribution 0.727 0.036 -1.380 1.560 sum -17.813 3.962 20.394 27.366 Atomic orbital electron populations 1.21800 0.89449 1.03417 1.05350 1.19788 0.98594 1.00680 0.84567 0.83454 1.30130 0.92885 0.93565 0.95051 1.81313 1.09650 1.10761 1.12841 1.21821 0.77740 1.02732 0.98643 1.57639 1.16671 1.30034 1.80175 1.21832 0.98729 0.84877 1.01021 1.01457 0.72855 0.72976 0.72675 1.93582 1.45088 1.86476 1.73644 1.93563 1.71329 1.48003 1.86214 1.55883 1.68917 1.35979 1.27727 1.21258 0.94816 0.87434 0.95256 1.21058 0.97402 0.95636 0.95221 1.21905 0.98679 0.98138 0.96806 1.21023 0.95745 0.88854 0.92830 1.44310 1.15939 1.05560 1.67601 1.19467 0.88489 1.20700 1.11195 0.92012 1.25856 1.01227 1.01571 0.95781 1.70188 1.31890 1.33323 1.22617 0.85315 0.80082 0.77649 0.77221 1.20314 1.21729 1.20193 1.20534 0.92146 0.89454 0.92426 1.21987 0.99623 0.96918 0.97430 0.92413 0.87038 0.91429 0.83401 0.89526 0.90975 0.91903 0.87016 0.75022 0.90059 0.90619 0.92037 0.92593 0.91390 0.97628 0.93317 0.94028 0.99270 0.92876 0.90686 0.92394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.26 9.15 71.98 0.66 0.40 16 2 C -0.01 -0.07 2.89 -12.60 -0.04 -0.11 16 3 H 0.15 0.01 7.42 -2.39 -0.02 -0.01 16 4 C 0.20 3.41 13.17 89.44 1.18 4.59 16 5 N -0.47 -11.88 16.97 20.01 0.34 -11.54 16 6 C 0.12 0.74 5.10 86.38 0.44 1.18 16 7 N -1.00 -12.14 3.03 -539.13 -1.63 -13.77 16 8 C 0.08 0.58 10.30 127.77 1.32 1.89 16 9 S 2.79 64.40 5.84 -56.49 -0.33 64.07 16 10 O -1.00 -29.44 16.60 -128.00 -2.12 -31.56 16 11 O -1.01 -28.49 16.65 -128.00 -2.13 -30.62 16 12 N -1.12 -27.19 3.78 -187.48 -0.71 -27.90 16 13 C 0.14 3.41 5.64 86.38 0.49 3.89 16 14 C -0.07 -2.40 2.18 -10.77 -0.02 -2.42 16 15 C -0.12 -4.23 5.26 30.67 0.16 -4.07 16 16 C 0.14 6.38 6.52 86.36 0.56 6.94 16 17 N -0.61 -32.35 2.99 -699.11 -2.09 -34.44 16 18 C -0.27 -15.45 9.57 84.03 0.80 -14.64 16 19 H 0.06 3.49 7.88 -2.92 -0.02 3.47 16 20 C -0.05 -2.81 4.92 84.86 0.42 -2.39 16 21 N -0.93 -56.72 11.25 21.65 0.24 -56.48 16 22 Si 0.97 46.00 29.58 68.60 2.03 48.03 16 23 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 24 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 25 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 26 C 0.18 8.96 5.29 86.36 0.46 9.42 16 27 C -0.12 -4.43 5.36 30.67 0.16 -4.26 16 28 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.11 -0.46 8.14 -2.39 -0.02 -0.48 16 30 H 0.07 0.20 8.14 -2.38 -0.02 0.18 16 31 H 0.15 -0.30 8.14 -2.38 -0.02 -0.32 16 32 H 0.09 0.90 6.81 -2.39 -0.02 0.88 16 33 H 0.07 0.42 8.14 -2.38 -0.02 0.40 16 34 H 0.06 0.66 7.65 -2.39 -0.02 0.64 16 35 H 0.11 -0.01 7.39 -2.39 -0.02 -0.03 16 36 H 0.42 10.93 7.59 -96.75 -0.73 10.20 16 37 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.08 1.89 7.75 -2.39 -0.02 1.87 16 39 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.07 2.21 7.50 -2.39 -0.02 2.19 16 42 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 43 H 0.05 2.18 7.93 -2.39 -0.02 2.16 16 44 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 45 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 46 H 0.05 2.96 6.14 -2.39 -0.01 2.94 16 47 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 48 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -83.13 393.42 0.41 -82.72 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 0.22 Total: 11.07 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: 6.59 Total: 0.41 kcal Atomic # 7 Polarization: -140.28 SS G_CDS: -3.85 Total: -144.13 kcal Atomic # 8 Polarization: -57.92 SS G_CDS: -4.26 Total: -62.18 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Atomic # 16 Polarization: 64.40 SS G_CDS: -0.33 Total: 64.07 kcal Total: -83.13 0.41 -82.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336940406.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.502 kcal (2) G-P(sol) polarization free energy of solvation -83.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds