Wall clock time and date at job start Wed Apr 1 2020 03:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46823 * 2 1 4 4 C 1.47202 * 109.47323 * 119.99596 * 2 1 3 5 5 N 2.60806 * 109.47097 * 119.99605 * 2 1 3 6 6 C 1.52994 * 109.47390 * 239.99940 * 2 1 3 7 7 N 1.46499 * 109.47334 * 66.72898 * 6 2 1 8 8 C 1.46499 * 120.00170 * 77.77040 * 7 6 2 9 9 S 1.65610 * 120.00103 * 257.77325 * 7 6 2 10 10 O 1.42101 * 106.40240 * 150.65278 * 9 7 6 11 11 O 1.42100 * 106.40046 * 17.72957 * 9 7 6 12 12 N 1.65595 * 107.21721 * 264.19051 * 9 7 6 13 13 C 1.46503 * 120.00177 * 61.14698 * 12 9 7 14 14 C 1.52992 * 109.47387 * 164.56707 * 13 12 9 15 15 C 1.53071 * 109.44119 * 64.79586 * 14 13 12 16 16 C 1.53197 * 109.29795 * 181.23622 * 15 14 13 17 17 N 1.46929 * 108.89275 * 305.57887 * 16 15 14 18 18 C 1.36932 * 120.63447 * 233.51228 * 17 16 15 19 19 H 1.08000 * 119.99902 * 147.87500 * 18 17 16 20 20 C 1.38815 * 119.99629 * 327.88032 * 18 17 16 21 21 N 1.31610 * 120.00299 * 345.87133 * 20 18 17 22 22 Si 1.86801 * 119.99602 * 165.87053 * 20 18 17 23 23 H 1.48500 * 109.47087 * 90.00401 * 22 20 18 24 24 H 1.48504 * 109.46835 * 209.99932 * 22 20 18 25 25 H 1.48494 * 109.47276 * 329.99804 * 22 20 18 26 26 C 1.46933 * 118.73615 * 53.53416 * 17 16 15 27 27 C 1.53041 * 109.46056 * 185.00039 * 14 13 12 28 28 H 1.08996 * 109.47373 * 59.58399 * 1 2 3 29 29 H 1.08997 * 109.46776 * 179.58319 * 1 2 3 30 30 H 1.08998 * 109.46980 * 299.58390 * 1 2 3 31 31 H 1.09007 * 109.47067 * 306.73377 * 6 2 1 32 32 H 1.08995 * 109.47697 * 186.73560 * 6 2 1 33 33 H 1.09008 * 109.46683 * 274.17669 * 8 7 6 34 34 H 1.09001 * 109.46863 * 34.17171 * 8 7 6 35 35 H 1.08991 * 109.47357 * 154.17553 * 8 7 6 36 36 H 0.97000 * 120.00441 * 241.14845 * 12 9 7 37 37 H 1.08999 * 109.46722 * 44.56604 * 13 12 9 38 38 H 1.08999 * 109.47145 * 284.57181 * 13 12 9 39 39 H 1.09002 * 109.45962 * 304.97289 * 14 13 12 40 40 H 1.09000 * 109.39035 * 61.36100 * 15 14 13 41 41 H 1.08998 * 109.62351 * 301.25681 * 15 14 13 42 42 H 1.08995 * 109.58818 * 185.72380 * 16 15 14 43 43 H 1.09001 * 109.58619 * 65.43524 * 16 15 14 44 44 H 0.97001 * 120.00523 * 179.97438 * 21 20 18 45 45 H 1.09006 * 109.58383 * 66.17939 * 26 17 16 46 46 H 1.08999 * 109.58451 * 186.45732 * 26 17 16 47 47 H 1.08996 * 109.50052 * 58.67979 * 27 14 13 48 48 H 1.08998 * 109.52502 * 298.59272 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0208 -0.6938 1.2019 5 7 2.3994 -1.2293 2.1296 6 6 2.0401 -0.7212 -1.2492 7 7 1.6884 0.0564 -2.4399 8 6 2.4686 1.2442 -2.7958 9 16 0.4089 -0.4071 -3.3835 10 8 -0.1093 0.7799 -3.9682 11 8 -0.3745 -1.2897 -2.5919 12 7 1.0202 -1.3129 -4.6277 13 6 1.7380 -2.5580 -4.3436 14 6 1.8572 -3.3823 -5.6270 15 6 2.7268 -2.6295 -6.6370 16 6 2.8186 -3.4432 -7.9318 17 7 3.2950 -4.7956 -7.6109 18 6 4.3828 -5.3230 -8.2540 19 1 5.0362 -6.0093 -7.7358 20 6 4.6459 -4.9754 -9.5719 21 7 3.7224 -4.3729 -10.2905 22 14 6.3107 -5.3626 -10.3254 23 1 6.2703 -6.7095 -10.9495 24 1 6.6341 -4.3473 -11.3598 25 1 7.3511 -5.3388 -9.2662 26 6 2.5817 -5.5716 -6.5872 27 6 2.4953 -4.7358 -5.3062 28 1 -0.3634 0.5203 -0.8862 29 1 -0.3633 -1.0276 -0.0075 30 1 -0.3633 0.5073 0.8937 31 1 1.5817 -1.7083 -1.3115 32 1 3.1234 -0.8268 -1.1910 33 1 2.0786 2.1093 -2.2594 34 1 3.5125 1.0882 -2.5235 35 1 2.3953 1.4188 -3.8692 36 1 0.9031 -1.0191 -5.5447 37 1 1.1909 -3.1298 -3.5941 38 1 2.7342 -2.3254 -3.9673 39 1 0.8654 -3.5397 -6.0509 40 1 3.7254 -2.4912 -6.2227 41 1 2.2827 -1.6570 -6.8493 42 1 3.5171 -2.9627 -8.6166 43 1 1.8343 -3.5032 -8.3962 44 1 3.9063 -4.1297 -11.2113 45 1 1.5769 -5.8049 -6.9398 46 1 3.1226 -6.4964 -6.3869 47 1 1.8858 -5.2601 -4.5703 48 1 3.4968 -4.5805 -4.9050 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336940407.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:56 Heat of formation + Delta-G solvation = -37.680957 kcal Electronic energy + Delta-G solvation = -29064.499892 eV Core-core repulsion = 25088.660141 eV Total energy + Delta-G solvation = -3975.839752 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -38.54001 -38.20601 -37.40137 -36.41189 -36.02131 -35.30114 -33.23014 -32.73401 -30.45364 -29.90163 -27.97496 -26.54700 -26.02349 -23.94114 -23.11107 -22.24988 -21.18211 -19.68208 -19.12925 -18.36007 -18.12074 -17.31073 -16.76145 -16.61811 -15.65835 -15.50293 -14.88013 -14.64684 -14.59026 -14.40509 -13.84682 -13.69413 -13.57658 -13.44934 -13.35666 -13.25679 -13.11397 -12.81417 -12.70497 -12.58037 -12.38792 -12.19120 -12.14625 -12.02033 -11.88922 -11.80517 -11.75887 -11.36012 -11.34294 -10.98633 -10.74946 -10.61544 -10.27650 -10.23764 -9.96033 -9.74895 -9.64811 -9.44861 -9.43828 -8.50728 -6.63236 -5.82019 -3.28742 0.34460 2.33029 2.40339 2.59600 3.25109 3.34275 3.41473 3.43226 3.55437 4.12051 4.17067 4.37308 4.46475 4.56241 4.67085 4.91001 5.03230 5.09929 5.12792 5.18476 5.22878 5.29768 5.37192 5.39313 5.42733 5.46047 5.54005 5.59042 5.75175 5.82692 5.85986 5.99119 6.10701 6.12796 6.28033 6.46229 6.54951 6.63012 6.74124 6.78941 6.90034 6.96904 7.16620 7.32110 7.60895 7.77270 8.45216 9.19696 9.81776 10.40967 11.26463 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.017622 B = 0.002513 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.553019 B =11140.914717 C =11605.261774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.013 4.013 3 H 0.120 0.880 4 C 0.213 3.787 5 N -0.429 5.429 6 C 0.128 3.872 7 N -1.007 6.007 8 C 0.092 3.908 9 S 2.784 3.216 10 O -0.977 6.977 11 O -0.971 6.971 12 N -1.123 6.123 13 C 0.122 3.878 14 C -0.086 4.086 15 C -0.135 4.135 16 C 0.172 3.828 17 N -0.592 5.592 18 C -0.255 4.255 19 H 0.063 0.937 20 C 0.005 3.995 21 N -0.902 5.902 22 Si 0.902 3.098 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.145 3.855 27 C -0.127 4.127 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.419 0.581 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.056 0.944 41 H 0.047 0.953 42 H 0.081 0.919 43 H 0.018 0.982 44 H 0.254 0.746 45 H 0.017 0.983 46 H 0.054 0.946 47 H 0.052 0.948 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.852 12.160 17.177 21.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.036 4.036 3 H 0.137 0.863 4 C -0.106 4.106 5 N -0.104 5.104 6 C 0.000 4.000 7 N -0.846 5.846 8 C -0.054 4.054 9 S 2.791 3.209 10 O -0.961 6.961 11 O -0.954 6.954 12 N -0.886 5.886 13 C -0.004 4.004 14 C -0.106 4.106 15 C -0.174 4.174 16 C 0.046 3.954 17 N -0.315 5.315 18 C -0.385 4.385 19 H 0.080 0.920 20 C -0.194 4.194 21 N -0.546 5.546 22 Si 0.731 3.269 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.019 3.981 27 C -0.167 4.167 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.118 0.882 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.254 0.746 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.099 0.901 43 H 0.036 0.964 44 H 0.064 0.936 45 H 0.035 0.965 46 H 0.072 0.928 47 H 0.071 0.929 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.137 11.566 18.724 22.600 hybrid contribution 1.096 0.166 -1.353 1.749 sum -4.041 11.732 17.372 21.348 Atomic orbital electron populations 1.21877 0.91307 1.04633 1.02698 1.19289 0.97974 0.99801 0.86568 0.86262 1.28919 0.93391 0.93799 0.94463 1.81263 1.08837 1.09035 1.11297 1.21303 1.02023 0.94571 0.82074 1.57830 1.51713 1.37788 1.37256 1.21521 0.96344 0.86147 1.01352 1.02039 0.72975 0.73124 0.72771 1.93635 1.77376 1.47321 1.77784 1.93631 1.65830 1.66390 1.69549 1.55850 1.74221 1.35631 1.22869 1.21468 0.95486 0.83887 0.99515 1.21257 1.00305 0.95257 0.93758 1.22248 0.98544 0.97801 0.98802 1.20709 0.98300 0.84643 0.91708 1.43997 1.32551 1.11568 1.43338 1.19129 1.00906 1.25716 0.92728 0.91968 1.25159 0.97797 1.00647 0.95766 1.70003 1.31782 1.44687 1.08134 0.86320 0.84047 0.77677 0.78826 1.21342 1.21581 1.20460 1.20896 0.95360 0.93585 0.88287 1.22017 0.99944 0.95301 0.99409 0.91782 0.90077 0.91383 0.88194 0.89244 0.92071 0.90726 0.90611 0.74570 0.90991 0.91992 0.90984 0.92549 0.93477 0.90058 0.96404 0.93616 0.96520 0.92773 0.92889 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 7.90 37.16 0.29 -0.67 16 2 C -0.01 -0.07 2.89 -93.41 -0.27 -0.34 16 3 H 0.12 0.38 8.04 -51.93 -0.42 -0.04 16 4 C 0.21 1.73 14.64 -20.76 -0.30 1.42 16 5 N -0.43 -4.81 18.54 42.16 0.78 -4.02 16 6 C 0.13 0.74 4.91 -4.05 -0.02 0.72 16 7 N -1.01 -6.80 2.90 -121.76 -0.35 -7.16 16 8 C 0.09 0.47 10.21 59.85 0.61 1.08 16 9 S 2.78 27.94 5.22 -107.50 -0.56 27.38 16 10 O -0.98 -12.46 17.34 -57.17 -0.99 -13.45 16 11 O -0.97 -11.54 14.52 -57.17 -0.83 -12.37 16 12 N -1.12 -11.49 5.93 -10.62 -0.06 -11.55 16 13 C 0.12 1.34 5.65 -4.04 -0.02 1.31 16 14 C -0.09 -1.23 2.26 -90.57 -0.20 -1.44 16 15 C -0.13 -2.24 5.25 -26.59 -0.14 -2.38 16 16 C 0.17 3.85 5.25 -3.71 -0.02 3.83 16 17 N -0.59 -14.18 2.98 -172.31 -0.51 -14.69 16 18 C -0.25 -6.80 9.55 -15.06 -0.14 -6.94 16 19 H 0.06 1.63 7.87 -52.49 -0.41 1.22 16 20 C 0.01 0.14 4.96 -17.43 -0.09 0.06 16 21 N -0.90 -25.62 11.32 55.49 0.63 -25.00 16 22 Si 0.90 21.17 29.58 -169.99 -5.03 16.14 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 C 0.15 2.88 6.52 -3.71 -0.02 2.86 16 27 C -0.13 -1.95 5.37 -26.61 -0.14 -2.10 16 28 H 0.06 0.46 6.63 -51.93 -0.34 0.11 16 29 H 0.08 0.63 7.88 -51.93 -0.41 0.22 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.10 0.63 7.19 -51.92 -0.37 0.26 16 32 H 0.09 0.37 8.09 -51.93 -0.42 -0.05 16 33 H 0.06 0.24 8.14 -51.92 -0.42 -0.18 16 34 H 0.07 0.25 8.07 -51.93 -0.42 -0.17 16 35 H 0.08 0.43 7.80 -51.93 -0.40 0.02 16 36 H 0.42 4.26 7.38 -34.47 -0.25 4.00 16 37 H 0.07 0.74 7.84 -51.93 -0.41 0.33 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.05 0.68 6.86 -51.93 -0.36 0.32 16 42 H 0.08 2.06 6.29 -51.93 -0.33 1.73 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 47 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 394.44 15.07 5.94 5.94 Total: -1.00 -33.70 394.44 -9.35 -43.05 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -7.90 Total: -1.70 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -0.47 Total: -2.57 kcal Atomic # 7 Polarization: -62.90 SS G_CDS: 0.48 Total: -62.42 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -1.82 Total: -25.83 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Atomic # 16 Polarization: 27.94 SS G_CDS: -0.56 Total: 27.38 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.70 -9.35 -43.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336940407.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.370 kcal (2) G-P(sol) polarization free energy of solvation -33.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds