Wall clock time and date at job start Wed Apr 1 2020 03:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46823 * 2 1 4 4 C 1.47202 * 109.47323 * 119.99596 * 2 1 3 5 5 N 2.60806 * 109.47097 * 119.99605 * 2 1 3 6 6 C 1.52994 * 109.47390 * 239.99940 * 2 1 3 7 7 N 1.46499 * 109.47334 * 66.72898 * 6 2 1 8 8 C 1.46499 * 120.00170 * 77.77040 * 7 6 2 9 9 S 1.65610 * 120.00103 * 257.77325 * 7 6 2 10 10 O 1.42101 * 106.40240 * 150.65278 * 9 7 6 11 11 O 1.42100 * 106.40046 * 17.72957 * 9 7 6 12 12 N 1.65595 * 107.21721 * 264.19051 * 9 7 6 13 13 C 1.46503 * 120.00177 * 61.14698 * 12 9 7 14 14 C 1.52992 * 109.47387 * 164.56707 * 13 12 9 15 15 C 1.53071 * 109.44119 * 64.79586 * 14 13 12 16 16 C 1.53197 * 109.29795 * 181.23622 * 15 14 13 17 17 N 1.46929 * 108.89275 * 305.57887 * 16 15 14 18 18 C 1.36932 * 120.63447 * 233.51228 * 17 16 15 19 19 H 1.08000 * 119.99902 * 147.87500 * 18 17 16 20 20 C 1.38815 * 119.99629 * 327.88032 * 18 17 16 21 21 N 1.31610 * 120.00299 * 345.87133 * 20 18 17 22 22 Si 1.86801 * 119.99602 * 165.87053 * 20 18 17 23 23 H 1.48500 * 109.47087 * 90.00401 * 22 20 18 24 24 H 1.48504 * 109.46835 * 209.99932 * 22 20 18 25 25 H 1.48494 * 109.47276 * 329.99804 * 22 20 18 26 26 C 1.46933 * 118.73615 * 53.53416 * 17 16 15 27 27 C 1.53041 * 109.46056 * 185.00039 * 14 13 12 28 28 H 1.08996 * 109.47373 * 59.58399 * 1 2 3 29 29 H 1.08997 * 109.46776 * 179.58319 * 1 2 3 30 30 H 1.08998 * 109.46980 * 299.58390 * 1 2 3 31 31 H 1.09007 * 109.47067 * 306.73377 * 6 2 1 32 32 H 1.08995 * 109.47697 * 186.73560 * 6 2 1 33 33 H 1.09008 * 109.46683 * 274.17669 * 8 7 6 34 34 H 1.09001 * 109.46863 * 34.17171 * 8 7 6 35 35 H 1.08991 * 109.47357 * 154.17553 * 8 7 6 36 36 H 0.97000 * 120.00441 * 241.14845 * 12 9 7 37 37 H 1.08999 * 109.46722 * 44.56604 * 13 12 9 38 38 H 1.08999 * 109.47145 * 284.57181 * 13 12 9 39 39 H 1.09002 * 109.45962 * 304.97289 * 14 13 12 40 40 H 1.09000 * 109.39035 * 61.36100 * 15 14 13 41 41 H 1.08998 * 109.62351 * 301.25681 * 15 14 13 42 42 H 1.08995 * 109.58818 * 185.72380 * 16 15 14 43 43 H 1.09001 * 109.58619 * 65.43524 * 16 15 14 44 44 H 0.97001 * 120.00523 * 179.97438 * 21 20 18 45 45 H 1.09006 * 109.58383 * 66.17939 * 26 17 16 46 46 H 1.08999 * 109.58451 * 186.45732 * 26 17 16 47 47 H 1.08996 * 109.50052 * 58.67979 * 27 14 13 48 48 H 1.08998 * 109.52502 * 298.59272 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0208 -0.6938 1.2019 5 7 2.3994 -1.2293 2.1296 6 6 2.0401 -0.7212 -1.2492 7 7 1.6884 0.0564 -2.4399 8 6 2.4686 1.2442 -2.7958 9 16 0.4089 -0.4071 -3.3835 10 8 -0.1093 0.7799 -3.9682 11 8 -0.3745 -1.2897 -2.5919 12 7 1.0202 -1.3129 -4.6277 13 6 1.7380 -2.5580 -4.3436 14 6 1.8572 -3.3823 -5.6270 15 6 2.7268 -2.6295 -6.6370 16 6 2.8186 -3.4432 -7.9318 17 7 3.2950 -4.7956 -7.6109 18 6 4.3828 -5.3230 -8.2540 19 1 5.0362 -6.0093 -7.7358 20 6 4.6459 -4.9754 -9.5719 21 7 3.7224 -4.3729 -10.2905 22 14 6.3107 -5.3626 -10.3254 23 1 6.2703 -6.7095 -10.9495 24 1 6.6341 -4.3473 -11.3598 25 1 7.3511 -5.3388 -9.2662 26 6 2.5817 -5.5716 -6.5872 27 6 2.4953 -4.7358 -5.3062 28 1 -0.3634 0.5203 -0.8862 29 1 -0.3633 -1.0276 -0.0075 30 1 -0.3633 0.5073 0.8937 31 1 1.5817 -1.7083 -1.3115 32 1 3.1234 -0.8268 -1.1910 33 1 2.0786 2.1093 -2.2594 34 1 3.5125 1.0882 -2.5235 35 1 2.3953 1.4188 -3.8692 36 1 0.9031 -1.0191 -5.5447 37 1 1.1909 -3.1298 -3.5941 38 1 2.7342 -2.3254 -3.9673 39 1 0.8654 -3.5397 -6.0509 40 1 3.7254 -2.4912 -6.2227 41 1 2.2827 -1.6570 -6.8493 42 1 3.5171 -2.9627 -8.6166 43 1 1.8343 -3.5032 -8.3962 44 1 3.9063 -4.1297 -11.2113 45 1 1.5769 -5.8049 -6.9398 46 1 3.1226 -6.4964 -6.3869 47 1 1.8858 -5.2601 -4.5703 48 1 3.4968 -4.5805 -4.9050 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336940407.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:55 Heat of formation + Delta-G solvation = -61.278280 kcal Electronic energy + Delta-G solvation = -29065.523149 eV Core-core repulsion = 25088.660141 eV Total energy + Delta-G solvation = -3976.863008 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.58009 -39.07659 -38.25144 -37.06233 -36.86149 -36.60752 -34.35343 -33.72762 -32.07301 -31.46986 -28.40310 -28.02417 -26.51148 -25.51601 -23.78791 -23.62374 -22.61800 -20.74039 -20.26225 -18.94920 -18.86593 -18.60921 -17.98207 -17.36811 -16.80567 -16.32068 -16.05225 -15.79139 -15.33511 -15.26525 -15.24349 -15.12098 -14.76341 -14.28545 -14.22036 -14.01580 -13.96997 -13.90588 -13.70674 -13.52458 -13.29865 -13.26906 -13.17025 -12.93828 -12.89738 -12.72862 -12.64339 -12.53321 -12.34656 -12.26766 -12.21508 -11.95340 -11.81976 -11.78410 -11.54087 -11.12458 -11.01026 -10.53401 -10.37761 -10.10298 -8.58132 -7.85209 -5.34978 -0.40517 1.47280 1.48424 1.57975 1.70971 1.79066 1.93142 2.52304 2.53837 2.95941 3.29767 3.40875 3.69926 3.76656 3.91578 3.92673 4.02545 4.08006 4.14363 4.26911 4.46890 4.60216 4.61779 4.66951 4.76213 4.77179 4.79127 4.82383 4.86307 4.95276 5.00740 5.03432 5.11212 5.14088 5.15922 5.28261 5.34175 5.37681 5.39756 5.48059 5.55601 5.59392 5.70120 5.83665 6.08834 6.44140 6.57001 7.19344 7.90502 8.43302 9.20434 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.017622 B = 0.002513 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.553019 B =11140.914717 C =11605.261774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.007 4.007 3 H 0.152 0.848 4 C 0.243 3.757 5 N -0.486 5.486 6 C 0.121 3.879 7 N -0.998 5.998 8 C 0.081 3.919 9 S 2.798 3.202 10 O -1.006 7.006 11 O -0.992 6.992 12 N -1.125 6.125 13 C 0.130 3.870 14 C -0.082 4.082 15 C -0.120 4.120 16 C 0.176 3.824 17 N -0.611 5.611 18 C -0.263 4.263 19 H 0.063 0.937 20 C -0.049 4.049 21 N -0.936 5.936 22 Si 0.965 3.035 23 H -0.287 1.287 24 H -0.293 1.293 25 H -0.268 1.268 26 C 0.138 3.862 27 C -0.116 4.116 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.114 0.886 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.068 0.932 36 H 0.419 0.581 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.069 0.931 42 H 0.044 0.956 43 H -0.010 1.010 44 H 0.249 0.751 45 H 0.007 0.993 46 H 0.051 0.949 47 H 0.084 0.916 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.892 13.143 19.190 23.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.030 4.030 3 H 0.169 0.831 4 C -0.075 4.075 5 N -0.163 5.163 6 C -0.006 4.006 7 N -0.838 5.838 8 C -0.063 4.063 9 S 2.806 3.194 10 O -0.990 6.990 11 O -0.975 6.975 12 N -0.887 5.887 13 C 0.004 3.996 14 C -0.102 4.102 15 C -0.159 4.159 16 C 0.050 3.950 17 N -0.335 5.335 18 C -0.393 4.393 19 H 0.081 0.919 20 C -0.245 4.245 21 N -0.581 5.581 22 Si 0.793 3.207 23 H -0.213 1.213 24 H -0.219 1.219 25 H -0.193 1.193 26 C 0.012 3.988 27 C -0.155 4.155 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.113 0.887 32 H 0.132 0.868 33 H 0.092 0.908 34 H 0.116 0.884 35 H 0.087 0.913 36 H 0.254 0.746 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.063 0.937 43 H 0.008 0.992 44 H 0.058 0.942 45 H 0.025 0.975 46 H 0.069 0.931 47 H 0.102 0.898 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.189 12.540 20.766 24.617 hybrid contribution 0.741 -0.161 -1.986 2.125 sum -3.448 12.379 18.780 22.756 Atomic orbital electron populations 1.21898 0.92153 1.03814 1.03083 1.19433 0.97113 1.01147 0.85280 0.83090 1.29264 0.91821 0.92382 0.94027 1.81299 1.10815 1.10994 1.13153 1.21480 1.03523 0.94163 0.81409 1.57531 1.51086 1.38347 1.36860 1.21777 0.97496 0.85745 1.01279 1.01407 0.73212 0.72320 0.72449 1.93598 1.78419 1.48424 1.78553 1.93604 1.67124 1.66895 1.69853 1.55814 1.74289 1.35579 1.23049 1.21381 0.97079 0.83675 0.97484 1.21160 0.99005 0.95116 0.94885 1.22027 0.99561 0.98039 0.96236 1.20557 0.95535 0.84884 0.93989 1.44293 1.32560 1.12647 1.43976 1.19470 1.01712 1.25156 0.92986 0.91891 1.25901 1.00985 1.01251 0.96346 1.70164 1.33567 1.46322 1.08096 0.85316 0.80383 0.77028 0.77939 1.21339 1.21947 1.19296 1.21082 0.94159 0.94175 0.89353 1.21878 1.01089 0.95274 0.97297 0.92231 0.91560 0.90219 0.88674 0.86768 0.90781 0.88351 0.91322 0.74600 0.89670 0.89794 0.91881 0.92347 0.91257 0.93708 0.99153 0.94189 0.97512 0.93065 0.89761 0.91620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 7.90 71.98 0.57 -1.10 16 2 C -0.01 -0.05 2.89 -12.60 -0.04 -0.09 16 3 H 0.15 0.29 8.04 -2.39 -0.02 0.27 16 4 C 0.24 3.39 14.64 89.44 1.31 4.70 16 5 N -0.49 -10.28 18.54 20.01 0.37 -9.90 16 6 C 0.12 0.97 4.91 86.38 0.42 1.39 16 7 N -1.00 -10.20 2.90 -539.14 -1.56 -11.77 16 8 C 0.08 0.53 10.21 127.77 1.30 1.84 16 9 S 2.80 50.23 5.22 -56.49 -0.29 49.94 16 10 O -1.01 -24.21 17.34 -128.00 -2.22 -26.43 16 11 O -0.99 -21.77 14.52 -128.00 -1.86 -23.63 16 12 N -1.12 -20.29 5.93 -187.50 -1.11 -21.41 16 13 C 0.13 2.39 5.65 86.38 0.49 2.88 16 14 C -0.08 -2.17 2.26 -10.76 -0.02 -2.19 16 15 C -0.12 -3.83 5.25 30.68 0.16 -3.67 16 16 C 0.18 8.07 5.25 86.36 0.45 8.53 16 17 N -0.61 -29.67 2.98 -699.05 -2.08 -31.75 16 18 C -0.26 -14.18 9.55 84.03 0.80 -13.38 16 19 H 0.06 3.31 7.87 -2.91 -0.02 3.29 16 20 C -0.05 -2.72 4.96 84.86 0.42 -2.30 16 21 N -0.94 -54.94 11.32 21.65 0.25 -54.69 16 22 Si 0.97 44.11 29.58 68.60 2.03 46.14 16 23 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 24 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 25 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 26 C 0.14 5.42 6.52 86.36 0.56 5.98 16 27 C -0.12 -3.29 5.37 30.67 0.16 -3.13 16 28 H 0.06 0.73 6.63 -2.39 -0.02 0.72 16 29 H 0.07 0.94 7.88 -2.39 -0.02 0.92 16 30 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.09 0.91 7.19 -2.38 -0.02 0.89 16 32 H 0.11 0.42 8.09 -2.39 -0.02 0.40 16 33 H 0.07 0.32 8.14 -2.38 -0.02 0.30 16 34 H 0.10 0.21 8.07 -2.39 -0.02 0.20 16 35 H 0.07 0.59 7.80 -2.39 -0.02 0.57 16 36 H 0.42 7.72 7.38 -96.75 -0.71 7.01 16 37 H 0.09 1.41 7.84 -2.39 -0.02 1.39 16 38 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.07 1.90 6.86 -2.39 -0.02 1.88 16 42 H 0.04 2.36 6.29 -2.39 -0.02 2.34 16 43 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 44 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 45 H 0.01 0.28 8.14 -2.38 -0.02 0.26 16 46 H 0.05 1.99 7.93 -2.39 -0.02 1.98 16 47 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 48 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -75.78 394.44 0.36 -75.43 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: 0.24 Total: 8.60 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: 6.60 Total: -0.52 kcal Atomic # 7 Polarization: -125.38 SS G_CDS: -4.14 Total: -129.52 kcal Atomic # 8 Polarization: -45.98 SS G_CDS: -4.08 Total: -50.06 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: 50.23 SS G_CDS: -0.29 Total: 49.94 kcal Total: -75.78 0.36 -75.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336940407.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.147 kcal (2) G-P(sol) polarization free energy of solvation -75.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds