Wall clock time and date at job start Wed Apr 1 2020 03:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.46762 * 2 1 4 4 C 1.46503 * 120.00110 * 274.99830 * 3 2 1 5 5 C 1.50700 * 109.47075 * 280.11054 * 4 3 2 6 6 H 1.08001 * 120.00111 * 4.27184 * 5 4 3 7 7 C 1.37872 * 120.00192 * 184.26639 * 5 4 3 8 8 N 1.31515 * 119.99912 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00273 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46650 * 60.00266 * 9 7 5 11 11 H 1.48502 * 109.47078 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47036 * 300.00651 * 9 7 5 13 13 S 1.65607 * 120.00084 * 95.00198 * 3 2 1 14 14 O 1.42106 * 106.39913 * 330.05488 * 13 3 2 15 15 O 1.42098 * 106.40352 * 197.13964 * 13 3 2 16 16 N 1.65598 * 107.22036 * 83.59485 * 13 3 2 17 17 C 1.46497 * 120.00141 * 65.33736 * 16 13 3 18 18 C 1.52996 * 109.47614 * 165.68911 * 17 16 13 19 19 C 1.52991 * 109.47435 * 180.02562 * 18 17 16 20 20 C 1.53005 * 109.47045 * 179.97438 * 19 18 17 21 21 N 1.46501 * 109.46949 * 180.02562 * 20 19 18 22 22 C 1.36879 * 126.39870 * 265.01985 * 21 20 19 23 23 C 1.34666 * 106.81826 * 180.02562 * 22 21 20 24 24 N 1.34126 * 108.02362 * 359.97438 * 23 22 21 25 25 C 1.30502 * 109.25489 * 359.73161 * 24 23 22 26 26 C 1.50695 * 125.65461 * 180.29215 * 25 24 23 27 27 H 1.08998 * 109.47045 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47439 * 300.00032 * 1 2 3 29 29 H 1.09000 * 109.47237 * 60.00034 * 1 2 3 30 30 H 1.08995 * 109.47327 * 240.00509 * 2 1 3 31 31 H 1.09005 * 109.47174 * 119.99488 * 2 1 3 32 32 H 1.08993 * 109.46950 * 40.11244 * 4 3 2 33 33 H 1.08998 * 109.46861 * 160.11293 * 4 3 2 34 34 H 0.96995 * 120.00342 * 179.97438 * 8 7 5 35 35 H 0.97003 * 120.00009 * 245.34875 * 16 13 3 36 36 H 1.09002 * 109.46771 * 45.69162 * 17 16 13 37 37 H 1.09001 * 109.47267 * 285.69613 * 17 16 13 38 38 H 1.08999 * 109.47117 * 59.99844 * 18 17 16 39 39 H 1.09001 * 109.46961 * 300.00976 * 18 17 16 40 40 H 1.08992 * 109.47539 * 299.99816 * 19 18 17 41 41 H 1.09002 * 109.46967 * 60.00241 * 19 18 17 42 42 H 1.09001 * 109.47300 * 299.99976 * 20 19 18 43 43 H 1.09002 * 109.46991 * 60.00317 * 20 19 18 44 44 H 1.07997 * 126.59274 * 0.04730 * 22 21 20 45 45 H 1.08000 * 125.99116 * 180.02562 * 23 22 21 46 46 H 1.09001 * 109.47092 * 270.17199 * 26 25 24 47 47 H 1.09002 * 109.47484 * 30.16673 * 26 25 24 48 48 H 1.09003 * 109.47840 * 150.17040 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1581 2.1088 -1.2639 5 6 3.4376 1.6938 -1.9434 6 1 4.0475 0.9121 -1.5152 7 6 3.8297 2.3120 -3.1118 8 7 3.0872 3.2641 -3.6330 9 14 5.4161 1.7981 -3.9536 10 1 5.3404 0.3601 -4.3165 11 1 5.6099 2.6096 -5.1821 12 1 6.5591 2.0163 -3.0312 13 16 2.4121 2.1203 1.4287 14 8 1.5760 1.5436 2.4226 15 8 2.4526 3.5153 1.1611 16 7 3.9614 1.6706 1.8025 17 6 5.0728 2.0892 0.9448 18 6 6.3964 1.8621 1.6778 19 6 7.5570 2.2999 0.7823 20 6 8.8806 2.0733 1.5157 21 7 9.9919 2.4931 0.6584 22 6 10.7292 1.6886 -0.1679 23 6 11.6424 2.4769 -0.7662 24 7 11.4673 3.7289 -0.3179 25 6 10.4764 3.7473 0.5312 26 6 9.9608 4.9654 1.2531 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 1.3119 1.8787 -1.9111 33 1 2.1831 3.1803 -1.0655 34 1 3.3631 3.6993 -4.4548 35 1 4.1330 1.1298 2.5893 36 1 4.9676 3.1472 0.7044 37 1 5.0619 1.5047 0.0248 38 1 6.5016 0.8042 1.9184 39 1 6.4071 2.4466 2.5978 40 1 7.5464 1.7157 -0.1378 41 1 7.4516 3.3579 0.5422 42 1 8.8910 2.6579 2.4356 43 1 8.9863 1.0154 1.7561 44 1 10.6026 0.6258 -0.3125 45 1 12.3852 2.1574 -1.4821 46 1 10.4952 5.0823 2.1959 47 1 10.1187 5.8487 0.6342 48 1 8.8956 4.8466 1.4516 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337066330.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:24 Heat of formation + Delta-G solvation = -34.511775 kcal Electronic energy + Delta-G solvation = -29003.405698 eV Core-core repulsion = 25027.703373 eV Total energy + Delta-G solvation = -3975.702325 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.15052 -36.92424 -36.57774 -36.05334 -35.23284 -34.67869 -32.76117 -31.88276 -31.75035 -29.96034 -27.73256 -26.81925 -26.64443 -23.56239 -23.20176 -21.80925 -21.44006 -21.43126 -19.77919 -18.80268 -17.28160 -17.05444 -16.81658 -16.47579 -15.89318 -15.83314 -15.48675 -15.04288 -14.54975 -14.39680 -13.97882 -13.83974 -13.57613 -13.30532 -13.16406 -13.09771 -12.95395 -12.57985 -12.47188 -12.35325 -12.09871 -12.03065 -11.91482 -11.73379 -11.54456 -11.38598 -11.32560 -11.12786 -11.07072 -11.00617 -10.89155 -10.55124 -10.41051 -10.07688 -10.01537 -9.85959 -9.65323 -9.04820 -8.55067 -8.40521 -8.10238 -6.16468 -4.23571 1.26197 1.96507 2.66748 3.10019 3.19864 3.26045 3.28736 3.50007 4.12835 4.29702 4.38053 4.41184 4.53892 4.68581 4.90668 4.98990 5.03862 5.15580 5.18182 5.19453 5.33052 5.34944 5.37631 5.38943 5.62183 5.65700 5.68358 5.72706 5.77847 5.79070 5.95186 6.03533 6.08825 6.20274 6.25799 6.31255 6.44058 6.64616 6.68058 6.70471 7.11370 7.23353 7.34019 7.40753 7.64545 7.80362 8.05363 8.10444 8.80186 9.42181 10.91404 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.010803 B = 0.003504 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.197456 B = 7988.212146 C = 9583.901315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.132 3.868 3 N -0.992 5.992 4 C 0.244 3.756 5 C -0.540 4.540 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.275 1.275 13 S 2.785 3.215 14 O -1.001 7.001 15 O -0.978 6.978 16 N -1.132 6.132 17 C 0.117 3.883 18 C -0.119 4.119 19 C -0.138 4.138 20 C 0.105 3.895 21 N -0.454 5.454 22 C -0.058 4.058 23 C -0.031 4.031 24 N -0.496 5.496 25 C 0.205 3.795 26 C -0.071 4.071 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.034 0.966 33 H 0.056 0.944 34 H 0.266 0.734 35 H 0.405 0.595 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.172 0.828 45 H 0.168 0.832 46 H 0.078 0.922 47 H 0.090 0.910 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.217 -5.513 11.163 15.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.006 3.994 3 N -0.833 5.833 4 C 0.121 3.879 5 C -0.580 4.580 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.524 5.524 9 Si 0.717 3.283 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 S 2.793 3.207 14 O -0.985 6.985 15 O -0.962 6.962 16 N -0.890 5.890 17 C -0.009 4.009 18 C -0.159 4.159 19 C -0.177 4.177 20 C -0.018 4.018 21 N -0.137 5.137 22 C -0.190 4.190 23 C -0.179 4.179 24 N -0.215 5.215 25 C -0.057 4.057 26 C -0.129 4.129 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.237 0.763 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.190 0.810 45 H 0.185 0.815 46 H 0.096 0.904 47 H 0.109 0.891 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.952 -4.023 11.185 14.881 hybrid contribution 0.775 -1.693 -0.456 1.917 sum 9.727 -5.716 10.730 15.570 Atomic orbital electron populations 1.22211 0.96936 1.01329 1.02519 1.20940 0.93686 0.82883 1.01907 1.57719 1.78586 1.22939 1.24092 1.19209 0.97188 0.92571 0.78894 1.21456 1.07365 1.20634 1.08519 0.91967 1.24933 0.96971 0.94741 0.97016 1.69910 1.37925 1.23938 1.20580 0.86718 0.83713 0.78616 0.79300 1.20237 1.21142 1.20069 1.01746 0.72604 0.73733 0.72629 1.93550 1.65465 1.79826 1.59702 1.93578 1.86516 1.30939 1.85164 1.56004 1.25349 1.70041 1.37638 1.21377 0.84233 1.01840 0.93459 1.21675 0.93628 1.01837 0.98753 1.21940 0.92173 1.03793 0.99769 1.21968 0.84673 1.02098 0.93055 1.45471 1.26407 1.08273 1.33531 1.22701 0.98391 0.98264 0.99691 1.22258 1.02192 0.89339 1.04145 1.70230 1.16529 1.22417 1.12349 1.23307 0.95258 0.86687 1.00427 1.20219 1.00819 0.92422 0.99482 0.92464 0.92461 0.92087 0.90198 0.92269 0.94812 0.92619 0.92442 0.76315 0.90247 0.89510 0.91260 0.91229 0.90326 0.90420 0.88952 0.88898 0.81032 0.81505 0.90384 0.89133 0.90521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.63 10.24 37.16 0.38 -2.25 16 2 C 0.13 2.19 6.02 -4.04 -0.02 2.17 16 3 N -0.99 -19.38 2.84 -115.66 -0.33 -19.71 16 4 C 0.24 5.78 5.46 -5.19 -0.03 5.75 16 5 C -0.54 -13.26 8.50 -34.44 -0.29 -13.56 16 6 H 0.06 1.44 6.47 -52.49 -0.34 1.10 16 7 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -24.65 13.29 55.43 0.74 -23.92 16 9 Si 0.89 20.04 29.54 -169.99 -5.02 15.01 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 13 S 2.79 52.28 6.07 -107.50 -0.65 51.63 16 14 O -1.00 -19.52 17.17 -57.17 -0.98 -20.51 16 15 O -0.98 -22.02 16.01 -57.17 -0.92 -22.94 16 16 N -1.13 -16.46 6.06 -10.62 -0.06 -16.53 16 17 C 0.12 1.72 6.21 -4.05 -0.03 1.70 16 18 C -0.12 -1.21 5.35 -26.74 -0.14 -1.35 16 19 C -0.14 -1.46 5.54 -26.73 -0.15 -1.61 16 20 C 0.10 0.89 5.68 -4.04 -0.02 0.86 16 21 N -0.45 -5.18 2.75 -113.90 -0.31 -5.50 16 22 C -0.06 -0.66 11.58 -16.56 -0.19 -0.85 16 23 C -0.03 -0.41 11.87 -17.81 -0.21 -0.62 16 24 N -0.50 -7.40 11.25 -10.82 -0.12 -7.52 16 25 C 0.21 2.63 7.90 -155.41 -1.23 1.40 16 26 C -0.07 -0.67 10.04 36.00 0.36 -0.30 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.92 7.96 -51.93 -0.41 0.50 16 29 H 0.06 0.98 8.10 -51.93 -0.42 0.56 16 30 H 0.08 1.32 8.09 -51.93 -0.42 0.90 16 31 H 0.06 0.85 7.79 -51.93 -0.40 0.45 16 32 H 0.03 0.84 8.10 -51.93 -0.42 0.42 16 33 H 0.06 1.48 6.77 -51.93 -0.35 1.13 16 34 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 35 H 0.41 4.61 8.65 -34.47 -0.30 4.31 16 36 H 0.08 1.34 7.76 -51.93 -0.40 0.93 16 37 H 0.09 1.44 5.86 -51.93 -0.30 1.14 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.08 0.90 7.63 -51.93 -0.40 0.51 16 42 H 0.09 0.62 7.94 -51.93 -0.41 0.21 16 43 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.17 1.46 8.06 -52.49 -0.42 1.04 16 45 H 0.17 1.74 8.06 -52.49 -0.42 1.32 16 46 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.08 0.63 7.33 -51.93 -0.38 0.25 16 LS Contribution 406.01 15.07 6.12 6.12 Total: -1.00 -33.79 406.01 -11.12 -44.91 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -7.90 Total: 5.95 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -1.67 Total: -7.01 kcal Atomic # 7 Polarization: -73.07 SS G_CDS: -0.09 Total: -73.16 kcal Atomic # 8 Polarization: -41.55 SS G_CDS: -1.90 Total: -43.45 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.01 kcal Atomic # 16 Polarization: 52.28 SS G_CDS: -0.65 Total: 51.63 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.79 -11.12 -44.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337066330.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.396 kcal (2) G-P(sol) polarization free energy of solvation -33.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds