Wall clock time and date at job start Wed Apr 1 2020 03:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.46762 * 2 1 4 4 C 1.46503 * 120.00110 * 274.99830 * 3 2 1 5 5 C 1.50700 * 109.47075 * 280.11054 * 4 3 2 6 6 H 1.08001 * 120.00111 * 4.27184 * 5 4 3 7 7 C 1.37872 * 120.00192 * 184.26639 * 5 4 3 8 8 N 1.31515 * 119.99912 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00273 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46650 * 60.00266 * 9 7 5 11 11 H 1.48502 * 109.47078 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47036 * 300.00651 * 9 7 5 13 13 S 1.65607 * 120.00084 * 95.00198 * 3 2 1 14 14 O 1.42106 * 106.39913 * 330.05488 * 13 3 2 15 15 O 1.42098 * 106.40352 * 197.13964 * 13 3 2 16 16 N 1.65598 * 107.22036 * 83.59485 * 13 3 2 17 17 C 1.46497 * 120.00141 * 65.33736 * 16 13 3 18 18 C 1.52996 * 109.47614 * 165.68911 * 17 16 13 19 19 C 1.52991 * 109.47435 * 180.02562 * 18 17 16 20 20 C 1.53005 * 109.47045 * 179.97438 * 19 18 17 21 21 N 1.46501 * 109.46949 * 180.02562 * 20 19 18 22 22 C 1.36879 * 126.39870 * 265.01985 * 21 20 19 23 23 C 1.34666 * 106.81826 * 180.02562 * 22 21 20 24 24 N 1.34126 * 108.02362 * 359.97438 * 23 22 21 25 25 C 1.30502 * 109.25489 * 359.73161 * 24 23 22 26 26 C 1.50695 * 125.65461 * 180.29215 * 25 24 23 27 27 H 1.08998 * 109.47045 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47439 * 300.00032 * 1 2 3 29 29 H 1.09000 * 109.47237 * 60.00034 * 1 2 3 30 30 H 1.08995 * 109.47327 * 240.00509 * 2 1 3 31 31 H 1.09005 * 109.47174 * 119.99488 * 2 1 3 32 32 H 1.08993 * 109.46950 * 40.11244 * 4 3 2 33 33 H 1.08998 * 109.46861 * 160.11293 * 4 3 2 34 34 H 0.96995 * 120.00342 * 179.97438 * 8 7 5 35 35 H 0.97003 * 120.00009 * 245.34875 * 16 13 3 36 36 H 1.09002 * 109.46771 * 45.69162 * 17 16 13 37 37 H 1.09001 * 109.47267 * 285.69613 * 17 16 13 38 38 H 1.08999 * 109.47117 * 59.99844 * 18 17 16 39 39 H 1.09001 * 109.46961 * 300.00976 * 18 17 16 40 40 H 1.08992 * 109.47539 * 299.99816 * 19 18 17 41 41 H 1.09002 * 109.46967 * 60.00241 * 19 18 17 42 42 H 1.09001 * 109.47300 * 299.99976 * 20 19 18 43 43 H 1.09002 * 109.46991 * 60.00317 * 20 19 18 44 44 H 1.07997 * 126.59274 * 0.04730 * 22 21 20 45 45 H 1.08000 * 125.99116 * 180.02562 * 23 22 21 46 46 H 1.09001 * 109.47092 * 270.17199 * 26 25 24 47 47 H 1.09002 * 109.47484 * 30.16673 * 26 25 24 48 48 H 1.09003 * 109.47840 * 150.17040 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1581 2.1088 -1.2639 5 6 3.4376 1.6938 -1.9434 6 1 4.0475 0.9121 -1.5152 7 6 3.8297 2.3120 -3.1118 8 7 3.0872 3.2641 -3.6330 9 14 5.4161 1.7981 -3.9536 10 1 5.3404 0.3601 -4.3165 11 1 5.6099 2.6096 -5.1821 12 1 6.5591 2.0163 -3.0312 13 16 2.4121 2.1203 1.4287 14 8 1.5760 1.5436 2.4226 15 8 2.4526 3.5153 1.1611 16 7 3.9614 1.6706 1.8025 17 6 5.0728 2.0892 0.9448 18 6 6.3964 1.8621 1.6778 19 6 7.5570 2.2999 0.7823 20 6 8.8806 2.0733 1.5157 21 7 9.9919 2.4931 0.6584 22 6 10.7292 1.6886 -0.1679 23 6 11.6424 2.4769 -0.7662 24 7 11.4673 3.7289 -0.3179 25 6 10.4764 3.7473 0.5312 26 6 9.9608 4.9654 1.2531 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 1.3119 1.8787 -1.9111 33 1 2.1831 3.1803 -1.0655 34 1 3.3631 3.6993 -4.4548 35 1 4.1330 1.1298 2.5893 36 1 4.9676 3.1472 0.7044 37 1 5.0619 1.5047 0.0248 38 1 6.5016 0.8042 1.9184 39 1 6.4071 2.4466 2.5978 40 1 7.5464 1.7157 -0.1378 41 1 7.4516 3.3579 0.5422 42 1 8.8910 2.6579 2.4356 43 1 8.9863 1.0154 1.7561 44 1 10.6026 0.6258 -0.3125 45 1 12.3852 2.1574 -1.4821 46 1 10.4952 5.0823 2.1959 47 1 10.1187 5.8487 0.6342 48 1 8.8956 4.8466 1.4516 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337066330.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:22 Heat of formation + Delta-G solvation = -57.547385 kcal Electronic energy + Delta-G solvation = -29004.404597 eV Core-core repulsion = 25027.703373 eV Total energy + Delta-G solvation = -3976.701225 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.00837 -38.33455 -37.80844 -37.58036 -36.86036 -35.69370 -34.67256 -32.81964 -32.58480 -31.49859 -28.70111 -28.43712 -27.63176 -24.94603 -24.52942 -23.27348 -22.42019 -22.29301 -20.62057 -20.26943 -18.67468 -18.57557 -18.26181 -17.87283 -17.27622 -16.82440 -16.62110 -16.36983 -16.00470 -15.44726 -15.27368 -14.83741 -14.81980 -14.61794 -14.46296 -13.95761 -13.92912 -13.76708 -13.76467 -13.57948 -13.34973 -13.27184 -13.17978 -13.13268 -12.99086 -12.77027 -12.72311 -12.68059 -12.44114 -12.27428 -12.24010 -12.05964 -11.75891 -11.68260 -11.54322 -10.94392 -10.57157 -10.55603 -10.33959 -9.76683 -9.27637 -8.16108 -6.28600 -0.25342 1.10410 1.41535 1.42416 1.49156 1.89050 2.05613 2.17319 2.40722 2.65628 3.16680 3.46917 3.62313 3.72843 3.78871 3.89161 3.98881 4.14141 4.17537 4.35335 4.44521 4.46323 4.50026 4.51960 4.53584 4.70022 4.70681 4.72256 4.80752 4.82052 4.86368 5.00390 5.01523 5.12801 5.18189 5.21265 5.30670 5.38861 5.41189 5.43856 5.55231 5.79208 5.85564 5.93455 6.12860 6.29851 6.31114 6.83459 7.16202 7.41018 8.92039 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.010803 B = 0.003504 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.197456 B = 7988.212146 C = 9583.901315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.123 3.877 3 N -0.996 5.996 4 C 0.259 3.741 5 C -0.532 4.532 6 H 0.079 0.921 7 C 0.015 3.985 8 N -0.929 5.929 9 Si 0.949 3.051 10 H -0.264 1.264 11 H -0.296 1.296 12 H -0.265 1.265 13 S 2.798 3.202 14 O -1.006 7.006 15 O -1.020 7.020 16 N -1.111 6.111 17 C 0.114 3.886 18 C -0.107 4.107 19 C -0.134 4.134 20 C 0.106 3.894 21 N -0.456 5.456 22 C -0.055 4.055 23 C -0.062 4.062 24 N -0.540 5.540 25 C 0.189 3.811 26 C -0.070 4.070 27 H 0.090 0.910 28 H 0.048 0.952 29 H 0.044 0.956 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.015 0.985 33 H 0.020 0.980 34 H 0.263 0.737 35 H 0.425 0.575 36 H 0.050 0.950 37 H 0.068 0.932 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.116 0.884 43 H 0.120 0.880 44 H 0.202 0.798 45 H 0.180 0.820 46 H 0.097 0.903 47 H 0.083 0.917 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.439 -8.114 13.195 18.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.002 4.002 3 N -0.837 5.837 4 C 0.135 3.865 5 C -0.571 4.571 6 H 0.097 0.903 7 C -0.185 4.185 8 N -0.568 5.568 9 Si 0.774 3.226 10 H -0.189 1.189 11 H -0.222 1.222 12 H -0.190 1.190 13 S 2.806 3.194 14 O -0.990 6.990 15 O -1.004 7.004 16 N -0.874 5.874 17 C -0.012 4.012 18 C -0.146 4.146 19 C -0.174 4.174 20 C -0.015 4.015 21 N -0.138 5.138 22 C -0.188 4.188 23 C -0.209 4.209 24 N -0.260 5.260 25 C -0.073 4.073 26 C -0.128 4.128 27 H 0.108 0.892 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.033 0.967 33 H 0.038 0.962 34 H 0.072 0.928 35 H 0.261 0.739 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.117 0.883 39 H 0.111 0.889 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.134 0.866 43 H 0.138 0.862 44 H 0.218 0.782 45 H 0.197 0.803 46 H 0.116 0.884 47 H 0.102 0.898 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.156 -6.673 13.262 17.988 hybrid contribution 0.346 -0.912 -1.037 1.424 sum 10.503 -7.585 12.225 17.812 Atomic orbital electron populations 1.22201 0.96193 1.03131 1.01299 1.21231 0.94458 0.81236 1.03315 1.57617 1.79409 1.24085 1.22623 1.18723 0.96404 0.91091 0.80285 1.21766 1.07282 1.20102 1.07929 0.90348 1.25720 0.99907 0.94838 0.98002 1.70055 1.39943 1.25669 1.21180 0.85750 0.80337 0.78558 0.77913 1.18880 1.22185 1.19028 1.01167 0.73330 0.72777 0.72145 1.93536 1.66374 1.79602 1.59500 1.93531 1.87343 1.33841 1.85672 1.55516 1.23665 1.70018 1.38239 1.21380 0.86514 0.99699 0.93644 1.21609 0.90224 1.04144 0.98638 1.21862 0.93776 1.02311 0.99412 1.22150 0.82332 1.04199 0.92825 1.45679 1.26722 1.07821 1.33599 1.23188 0.97492 0.99428 0.98695 1.22663 1.03590 0.89327 1.05309 1.70178 1.18188 1.23789 1.13839 1.23850 0.95073 0.88085 1.00332 1.20325 1.01654 0.90970 0.99894 0.89169 0.93331 0.93640 0.90134 0.89399 0.96745 0.96160 0.92769 0.73922 0.93136 0.91425 0.88345 0.88938 0.92405 0.92211 0.86595 0.86223 0.78158 0.80327 0.88425 0.89807 0.89381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.97 10.24 71.98 0.74 -4.24 16 2 C 0.12 3.85 6.02 86.38 0.52 4.37 16 3 N -1.00 -38.69 2.84 -519.85 -1.48 -40.17 16 4 C 0.26 12.62 5.46 85.63 0.47 13.09 16 5 C -0.53 -26.19 8.50 25.60 0.22 -25.97 16 6 H 0.08 3.54 6.47 -2.91 -0.02 3.52 16 7 C 0.01 0.78 5.46 84.65 0.46 1.24 16 8 N -0.93 -53.28 13.29 21.45 0.28 -53.00 16 9 Si 0.95 41.14 29.54 68.60 2.03 43.16 16 10 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 11 H -0.30 -13.23 7.11 99.48 0.71 -12.53 16 12 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 13 S 2.80 103.32 6.07 -56.49 -0.34 102.98 16 14 O -1.01 -37.61 17.17 -128.00 -2.20 -39.81 16 15 O -1.02 -46.99 16.01 -128.00 -2.05 -49.04 16 16 N -1.11 -29.91 6.06 -187.50 -1.14 -31.04 16 17 C 0.11 3.18 6.21 86.38 0.54 3.71 16 18 C -0.11 -1.77 5.35 30.59 0.16 -1.61 16 19 C -0.13 -2.50 5.54 30.59 0.17 -2.34 16 20 C 0.11 1.40 5.68 86.38 0.49 1.90 16 21 N -0.46 -9.37 2.75 -514.28 -1.41 -10.78 16 22 C -0.05 -1.14 11.58 83.09 0.96 -0.18 16 23 C -0.06 -1.57 11.87 83.52 0.99 -0.58 16 24 N -0.54 -16.03 11.25 -188.13 -2.12 -18.15 16 25 C 0.19 4.64 7.90 138.12 1.09 5.73 16 26 C -0.07 -1.23 10.04 71.23 0.72 -0.51 16 27 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.05 1.50 7.96 -2.39 -0.02 1.48 16 29 H 0.04 1.45 8.10 -2.39 -0.02 1.43 16 30 H 0.08 2.52 8.09 -2.39 -0.02 2.50 16 31 H 0.09 2.26 7.79 -2.38 -0.02 2.24 16 32 H 0.01 0.75 8.10 -2.39 -0.02 0.73 16 33 H 0.02 1.14 6.77 -2.39 -0.02 1.12 16 34 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 35 H 0.42 8.11 8.65 -96.74 -0.84 7.27 16 36 H 0.05 1.71 7.76 -2.39 -0.02 1.69 16 37 H 0.07 2.16 5.86 -2.39 -0.01 2.14 16 38 H 0.10 1.13 8.14 -2.39 -0.02 1.12 16 39 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.06 1.32 7.63 -2.39 -0.02 1.30 16 42 H 0.12 1.03 7.94 -2.39 -0.02 1.01 16 43 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.20 2.77 8.06 -2.91 -0.02 2.75 16 45 H 0.18 3.69 8.06 -2.91 -0.02 3.66 16 46 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.08 1.55 8.14 -2.39 -0.02 1.54 16 48 H 0.09 1.30 7.33 -2.39 -0.02 1.28 16 Total: -1.00 -76.12 406.01 -0.79 -76.90 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: 0.11 Total: 24.31 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: 7.52 Total: -5.38 kcal Atomic # 7 Polarization: -147.27 SS G_CDS: -5.86 Total: -153.13 kcal Atomic # 8 Polarization: -84.59 SS G_CDS: -4.25 Total: -88.84 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.16 kcal Atomic # 16 Polarization: 103.32 SS G_CDS: -0.34 Total: 102.98 kcal Total: -76.12 -0.79 -76.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337066330.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.354 kcal (2) G-P(sol) polarization free energy of solvation -76.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds