Wall clock time and date at job start Wed Apr 1 2020 03:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47645 * 2 1 4 4 C 1.53004 * 109.46707 * 240.00061 * 2 1 3 5 5 C 1.47206 * 109.46671 * 175.00009 * 4 2 1 6 6 N 3.43555 * 154.82189 * 248.43213 * 2 1 3 7 7 N 1.46494 * 109.47143 * 120.00368 * 2 1 3 8 8 C 1.46498 * 120.00198 * 59.99910 * 7 2 1 9 9 S 1.65597 * 119.99880 * 239.99803 * 7 2 1 10 10 O 1.42105 * 106.40329 * 203.53819 * 9 7 2 11 11 O 1.42097 * 106.40278 * 336.45734 * 9 7 2 12 12 N 1.65599 * 107.21984 * 90.00116 * 9 7 2 13 13 C 1.46500 * 119.99915 * 64.99804 * 12 9 7 14 14 C 1.53004 * 109.46789 * 165.00430 * 13 12 9 15 15 C 1.53039 * 109.45790 * 295.02302 * 14 13 12 16 16 C 1.53196 * 109.31104 * 178.60418 * 15 14 13 17 17 N 1.46925 * 108.76478 * 54.65662 * 16 15 14 18 18 C 1.36941 * 120.62886 * 126.40901 * 17 16 15 19 19 H 1.08000 * 119.99783 * 331.82075 * 18 17 16 20 20 C 1.38804 * 119.99910 * 151.82437 * 18 17 16 21 21 N 1.31626 * 120.00201 * 343.07515 * 20 18 17 22 22 Si 1.86804 * 119.99872 * 163.07947 * 20 18 17 23 23 H 1.48491 * 109.47205 * 59.99656 * 22 20 18 24 24 H 1.48499 * 109.47021 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47141 * 299.99379 * 22 20 18 26 26 C 1.46923 * 118.73928 * 306.38547 * 17 16 15 27 27 C 1.53040 * 109.45898 * 174.97176 * 14 13 12 28 28 H 1.09003 * 109.47004 * 300.00068 * 1 2 3 29 29 H 1.09007 * 109.47352 * 59.99503 * 1 2 3 30 30 H 1.09001 * 109.47645 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47466 * 294.99838 * 4 2 1 32 32 H 1.09003 * 109.47216 * 55.00263 * 4 2 1 33 33 H 1.09005 * 109.47768 * 90.00035 * 8 7 2 34 34 H 1.09003 * 109.47592 * 210.00098 * 8 7 2 35 35 H 1.09000 * 109.47427 * 329.99955 * 8 7 2 36 36 H 0.97006 * 120.00010 * 245.00079 * 12 9 7 37 37 H 1.09000 * 109.47231 * 284.99918 * 13 12 9 38 38 H 1.08999 * 109.47042 * 45.00125 * 13 12 9 39 39 H 1.08996 * 109.46575 * 54.99880 * 14 13 12 40 40 H 1.09000 * 109.50076 * 298.56774 * 15 14 13 41 41 H 1.09002 * 109.49748 * 58.66957 * 15 14 13 42 42 H 1.09007 * 109.59654 * 294.86701 * 16 15 14 43 43 H 1.09001 * 109.70291 * 174.50990 * 16 15 14 44 44 H 0.96997 * 119.99906 * 180.02562 * 21 20 18 45 45 H 1.09006 * 109.58636 * 293.81909 * 26 17 16 46 46 H 1.09000 * 109.70513 * 173.46683 * 26 17 16 47 47 H 1.09002 * 109.49828 * 301.34062 * 27 14 13 48 48 H 1.09004 * 109.49911 * 61.43553 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5069 -0.6174 -1.3113 6 7 4.6391 -0.5373 -1.3593 7 7 2.0183 -0.6907 1.1961 8 6 1.6644 -2.0932 1.4279 9 16 2.9704 0.1141 2.2861 10 8 3.7118 -0.8791 2.9813 11 8 3.5794 1.1828 1.5748 12 7 1.9607 0.8089 3.3998 13 6 1.1510 -0.0354 4.2816 14 6 0.6087 0.8074 5.4378 15 6 1.7732 1.2968 6.3018 16 6 1.2295 2.1689 7.4379 17 7 0.2115 1.4063 8.1734 18 6 0.3015 1.2513 9.5310 19 1 1.2680 1.2628 10.0129 20 6 -0.8493 1.0793 10.2877 21 7 -2.0232 1.3911 9.7805 22 14 -0.7321 0.4057 12.0261 23 1 0.1084 1.3096 12.8517 24 1 -2.0921 0.3190 12.6161 25 1 -0.1195 -0.9467 11.9927 26 6 -0.9051 0.8136 7.4247 27 6 -0.3374 -0.0429 6.2886 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.7515 -1.7715 -1.2057 32 1 1.6052 -0.2617 -2.1370 33 1 2.4157 -2.7378 0.9715 34 1 1.6237 -2.2854 2.5001 35 1 0.6904 -2.3003 0.9845 36 1 1.9055 1.7750 3.4682 37 1 0.3188 -0.4568 3.7177 38 1 1.7670 -0.8426 4.6780 39 1 0.0669 1.6650 5.0391 40 1 2.3004 0.4399 6.7211 41 1 2.4590 1.8828 5.6900 42 1 0.7810 3.0717 7.0233 43 1 2.0409 2.4409 8.1130 44 1 -2.8274 1.2712 10.3094 45 1 -1.5277 1.6059 7.0090 46 1 -1.5030 0.1897 8.0890 47 1 -1.1540 -0.4108 5.6672 48 1 0.2099 -0.8871 6.7080 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337781337.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:28 Heat of formation + Delta-G solvation = -36.475949 kcal Electronic energy + Delta-G solvation = -29205.632903 eV Core-core repulsion = 25229.845405 eV Total energy + Delta-G solvation = -3975.787498 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -38.61943 -38.20156 -37.37556 -36.32355 -35.96690 -35.28418 -32.69009 -32.32468 -30.66627 -29.64974 -28.69595 -26.93480 -26.50653 -23.91956 -22.20678 -21.98220 -21.17968 -19.69854 -19.11343 -18.37556 -18.06044 -17.60951 -16.67832 -16.45912 -15.82961 -15.15509 -14.87566 -14.67095 -14.54413 -14.20477 -14.11608 -13.91522 -13.59336 -13.51215 -13.22441 -13.04079 -12.88341 -12.83527 -12.73015 -12.41515 -12.24016 -12.21495 -12.10536 -12.07852 -12.04206 -11.84642 -11.67953 -11.36447 -11.30422 -10.99224 -10.71470 -10.52722 -10.25210 -10.24480 -9.91874 -9.72706 -9.61509 -9.46690 -9.37179 -8.47023 -6.66836 -5.79542 -3.21582 0.38371 2.45289 2.51563 2.64524 3.36180 3.38376 3.43735 3.45682 3.61386 4.11296 4.21736 4.45655 4.49731 4.51751 4.72849 4.91012 4.94125 5.01245 5.11285 5.13702 5.21036 5.23639 5.31310 5.38272 5.44897 5.45816 5.61957 5.62705 5.77077 5.81310 5.89063 6.02987 6.12558 6.18265 6.31537 6.49972 6.57379 6.66226 6.75534 6.82586 6.89923 7.00358 7.30092 7.35041 7.63767 7.79423 8.45280 9.21636 9.84981 10.41691 11.29060 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.026500 B = 0.002408 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.339486 B =11623.350796 C =11973.603036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.148 3.852 3 H 0.108 0.892 4 C -0.034 4.034 5 C 0.196 3.804 6 N -0.423 5.423 7 N -1.009 6.009 8 C 0.087 3.913 9 S 2.781 3.219 10 O -0.971 6.971 11 O -0.977 6.977 12 N -1.121 6.121 13 C 0.122 3.878 14 C -0.083 4.083 15 C -0.129 4.129 16 C 0.145 3.855 17 N -0.592 5.592 18 C -0.251 4.251 19 H 0.064 0.936 20 C 0.002 3.998 21 N -0.904 5.904 22 Si 0.902 3.098 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.284 1.284 26 C 0.172 3.828 27 C -0.135 4.135 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.114 0.886 32 H 0.122 0.878 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.417 0.583 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.060 0.940 41 H 0.049 0.951 42 H 0.016 0.984 43 H 0.053 0.947 44 H 0.254 0.746 45 H 0.017 0.983 46 H 0.087 0.913 47 H 0.050 0.950 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.288 -5.486 -23.570 24.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.041 3.959 3 H 0.126 0.874 4 C -0.076 4.076 5 C -0.122 4.122 6 N -0.100 5.100 7 N -0.849 5.849 8 C -0.058 4.058 9 S 2.788 3.212 10 O -0.954 6.954 11 O -0.961 6.961 12 N -0.884 5.884 13 C -0.004 4.004 14 C -0.103 4.103 15 C -0.168 4.168 16 C 0.018 3.982 17 N -0.315 5.315 18 C -0.381 4.381 19 H 0.082 0.918 20 C -0.197 4.197 21 N -0.549 5.549 22 Si 0.732 3.268 23 H -0.209 1.209 24 H -0.217 1.217 25 H -0.210 1.210 26 C 0.046 3.954 27 C -0.175 4.175 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.132 0.868 32 H 0.140 0.860 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.251 0.749 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.034 0.966 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.035 0.965 46 H 0.106 0.894 47 H 0.069 0.931 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.803 -5.553 -23.560 24.367 hybrid contribution -0.922 -0.008 0.972 1.339 sum 1.881 -5.561 -22.588 23.339 Atomic orbital electron populations 1.22166 0.92989 1.03427 1.03575 1.20888 0.95509 0.96837 0.82703 0.87379 1.19735 0.82410 1.04823 1.00629 1.29091 0.95322 0.93922 0.93906 1.81261 1.12980 1.07938 1.07802 1.58067 1.70241 1.21373 1.35204 1.21528 1.01530 0.80166 1.02548 1.02077 0.73212 0.73127 0.72741 1.93630 1.67962 1.60789 1.73047 1.93623 1.74156 1.55552 1.72780 1.55866 1.62802 1.17971 1.51714 1.21514 0.93906 0.93486 0.91501 1.21245 0.97218 0.98092 0.93720 1.22073 0.96486 1.00585 0.97684 1.20905 0.92456 0.92318 0.92497 1.44045 1.25609 1.58471 1.03401 1.19153 0.92113 1.44390 0.82448 0.91803 1.25034 0.95879 1.00979 0.97778 1.70019 0.97525 1.50066 1.37298 0.86371 0.76596 0.79323 0.84495 1.20914 1.21658 1.21031 1.20747 0.89393 0.94449 0.90819 1.22217 0.97636 0.99223 0.98400 0.91029 0.90758 0.91296 0.86799 0.86035 0.92403 0.90640 0.90243 0.74863 0.92109 0.90739 0.91188 0.92119 0.93214 0.96623 0.92887 0.93623 0.96512 0.89442 0.93134 0.92381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.45 9.17 37.16 0.34 -0.11 16 2 C 0.15 0.76 2.60 -67.93 -0.18 0.58 16 3 H 0.11 0.67 6.91 -51.93 -0.36 0.31 16 4 C -0.03 -0.13 5.14 -29.51 -0.15 -0.28 16 5 C 0.20 1.83 15.14 -20.76 -0.31 1.51 16 6 N -0.42 -5.69 18.54 42.15 0.78 -4.91 16 7 N -1.01 -7.67 2.83 -114.61 -0.32 -7.99 16 8 C 0.09 0.50 9.25 59.85 0.55 1.06 16 9 S 2.78 33.14 6.09 -107.50 -0.66 32.49 16 10 O -0.97 -15.13 16.68 -57.17 -0.95 -16.08 16 11 O -0.98 -14.10 16.70 -57.17 -0.95 -15.05 16 12 N -1.12 -11.93 5.56 -10.61 -0.06 -11.99 16 13 C 0.12 1.39 5.64 -4.04 -0.02 1.37 16 14 C -0.08 -1.21 2.18 -90.58 -0.20 -1.41 16 15 C -0.13 -2.15 5.26 -26.61 -0.14 -2.29 16 16 C 0.14 2.97 6.52 -3.71 -0.02 2.94 16 17 N -0.59 -14.50 2.99 -172.32 -0.52 -15.01 16 18 C -0.25 -6.83 9.58 -15.06 -0.14 -6.98 16 19 H 0.06 1.72 7.88 -52.49 -0.41 1.30 16 20 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 21 N -0.90 -25.78 11.19 55.49 0.62 -25.16 16 22 Si 0.90 21.51 29.59 -169.99 -5.03 16.49 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 C 0.17 3.88 5.30 -3.72 -0.02 3.87 16 27 C -0.13 -2.30 5.36 -26.61 -0.14 -2.44 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.09 8.14 -51.92 -0.42 -0.33 16 30 H 0.07 0.12 6.66 -51.93 -0.35 -0.23 16 31 H 0.11 0.17 7.51 -51.93 -0.39 -0.22 16 32 H 0.12 0.06 8.14 -51.93 -0.42 -0.36 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.50 7.79 -51.93 -0.40 0.09 16 35 H 0.08 0.22 6.43 -51.93 -0.33 -0.12 16 36 H 0.42 4.06 8.37 -34.47 -0.29 3.77 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.93 7.75 -51.93 -0.40 0.53 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.05 0.73 7.50 -51.93 -0.39 0.34 16 42 H 0.02 0.32 8.14 -51.92 -0.42 -0.10 16 43 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 44 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.09 2.24 6.07 -51.93 -0.31 1.92 16 47 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 48 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 396.24 15.07 5.97 5.97 Total: -1.00 -36.84 396.24 -9.48 -46.32 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -7.84 Total: -2.87 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -0.52 Total: -2.21 kcal Atomic # 7 Polarization: -65.57 SS G_CDS: 0.50 Total: -65.06 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -1.91 Total: -31.14 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.49 kcal Atomic # 16 Polarization: 33.14 SS G_CDS: -0.66 Total: 32.49 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.84 -9.48 -46.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337781337.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.848 kcal (2) G-P(sol) polarization free energy of solvation -36.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds