Wall clock time and date at job start Wed Apr 1 2020 03:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47645 * 2 1 4 4 C 1.53004 * 109.46707 * 240.00061 * 2 1 3 5 5 C 1.47206 * 109.46671 * 175.00009 * 4 2 1 6 6 N 3.43555 * 154.82189 * 248.43213 * 2 1 3 7 7 N 1.46494 * 109.47143 * 120.00368 * 2 1 3 8 8 C 1.46498 * 120.00198 * 59.99910 * 7 2 1 9 9 S 1.65597 * 119.99880 * 239.99803 * 7 2 1 10 10 O 1.42105 * 106.40329 * 203.53819 * 9 7 2 11 11 O 1.42097 * 106.40278 * 336.45734 * 9 7 2 12 12 N 1.65599 * 107.21984 * 90.00116 * 9 7 2 13 13 C 1.46500 * 119.99915 * 64.99804 * 12 9 7 14 14 C 1.53004 * 109.46789 * 165.00430 * 13 12 9 15 15 C 1.53039 * 109.45790 * 295.02302 * 14 13 12 16 16 C 1.53196 * 109.31104 * 178.60418 * 15 14 13 17 17 N 1.46925 * 108.76478 * 54.65662 * 16 15 14 18 18 C 1.36941 * 120.62886 * 126.40901 * 17 16 15 19 19 H 1.08000 * 119.99783 * 331.82075 * 18 17 16 20 20 C 1.38804 * 119.99910 * 151.82437 * 18 17 16 21 21 N 1.31626 * 120.00201 * 343.07515 * 20 18 17 22 22 Si 1.86804 * 119.99872 * 163.07947 * 20 18 17 23 23 H 1.48491 * 109.47205 * 59.99656 * 22 20 18 24 24 H 1.48499 * 109.47021 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47141 * 299.99379 * 22 20 18 26 26 C 1.46923 * 118.73928 * 306.38547 * 17 16 15 27 27 C 1.53040 * 109.45898 * 174.97176 * 14 13 12 28 28 H 1.09003 * 109.47004 * 300.00068 * 1 2 3 29 29 H 1.09007 * 109.47352 * 59.99503 * 1 2 3 30 30 H 1.09001 * 109.47645 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47466 * 294.99838 * 4 2 1 32 32 H 1.09003 * 109.47216 * 55.00263 * 4 2 1 33 33 H 1.09005 * 109.47768 * 90.00035 * 8 7 2 34 34 H 1.09003 * 109.47592 * 210.00098 * 8 7 2 35 35 H 1.09000 * 109.47427 * 329.99955 * 8 7 2 36 36 H 0.97006 * 120.00010 * 245.00079 * 12 9 7 37 37 H 1.09000 * 109.47231 * 284.99918 * 13 12 9 38 38 H 1.08999 * 109.47042 * 45.00125 * 13 12 9 39 39 H 1.08996 * 109.46575 * 54.99880 * 14 13 12 40 40 H 1.09000 * 109.50076 * 298.56774 * 15 14 13 41 41 H 1.09002 * 109.49748 * 58.66957 * 15 14 13 42 42 H 1.09007 * 109.59654 * 294.86701 * 16 15 14 43 43 H 1.09001 * 109.70291 * 174.50990 * 16 15 14 44 44 H 0.96997 * 119.99906 * 180.02562 * 21 20 18 45 45 H 1.09006 * 109.58636 * 293.81909 * 26 17 16 46 46 H 1.09000 * 109.70513 * 173.46683 * 26 17 16 47 47 H 1.09002 * 109.49828 * 301.34062 * 27 14 13 48 48 H 1.09004 * 109.49911 * 61.43553 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5069 -0.6174 -1.3113 6 7 4.6391 -0.5373 -1.3593 7 7 2.0183 -0.6907 1.1961 8 6 1.6644 -2.0932 1.4279 9 16 2.9704 0.1141 2.2861 10 8 3.7118 -0.8791 2.9813 11 8 3.5794 1.1828 1.5748 12 7 1.9607 0.8089 3.3998 13 6 1.1510 -0.0354 4.2816 14 6 0.6087 0.8074 5.4378 15 6 1.7732 1.2968 6.3018 16 6 1.2295 2.1689 7.4379 17 7 0.2115 1.4063 8.1734 18 6 0.3015 1.2513 9.5310 19 1 1.2680 1.2628 10.0129 20 6 -0.8493 1.0793 10.2877 21 7 -2.0232 1.3911 9.7805 22 14 -0.7321 0.4057 12.0261 23 1 0.1084 1.3096 12.8517 24 1 -2.0921 0.3190 12.6161 25 1 -0.1195 -0.9467 11.9927 26 6 -0.9051 0.8136 7.4247 27 6 -0.3374 -0.0429 6.2886 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.7515 -1.7715 -1.2057 32 1 1.6052 -0.2617 -2.1370 33 1 2.4157 -2.7378 0.9715 34 1 1.6237 -2.2854 2.5001 35 1 0.6904 -2.3003 0.9845 36 1 1.9055 1.7750 3.4682 37 1 0.3188 -0.4568 3.7177 38 1 1.7670 -0.8426 4.6780 39 1 0.0669 1.6650 5.0391 40 1 2.3004 0.4399 6.7211 41 1 2.4590 1.8828 5.6900 42 1 0.7810 3.0717 7.0233 43 1 2.0409 2.4409 8.1130 44 1 -2.8274 1.2712 10.3094 45 1 -1.5277 1.6059 7.0090 46 1 -1.5030 0.1897 8.0890 47 1 -1.1540 -0.4108 5.6672 48 1 0.2099 -0.8871 6.7080 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337781337.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:27 Heat of formation + Delta-G solvation = -64.050211 kcal Electronic energy + Delta-G solvation = -29206.828613 eV Core-core repulsion = 25229.845405 eV Total energy + Delta-G solvation = -3976.983208 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.61059 -39.11569 -38.40569 -37.07509 -37.00429 -36.64192 -34.32737 -32.76645 -32.31105 -31.29756 -28.98327 -28.08112 -27.33905 -25.54584 -23.73770 -22.70354 -22.45966 -20.85213 -20.21872 -19.14152 -18.77258 -18.58478 -18.34973 -17.30200 -16.83860 -16.45738 -15.77840 -15.67853 -15.57914 -15.38772 -15.27198 -14.80623 -14.77689 -14.66487 -14.29636 -14.17514 -13.89315 -13.69258 -13.60230 -13.46013 -13.32865 -13.23864 -13.21576 -12.98771 -12.87509 -12.76144 -12.54880 -12.52431 -12.46379 -12.27519 -12.17645 -11.98456 -11.80700 -11.66799 -11.50696 -11.14384 -11.10069 -10.51215 -10.40235 -10.10461 -8.64295 -7.86190 -5.30847 -0.48759 1.47081 1.48741 1.55791 1.78999 1.85235 1.90404 2.51894 2.52406 3.13196 3.27035 3.29273 3.73912 3.75187 3.86247 4.01036 4.03672 4.12823 4.21279 4.41525 4.51410 4.56466 4.61053 4.71732 4.72815 4.79259 4.80432 4.86909 4.87244 4.93339 4.99542 5.04387 5.10194 5.13192 5.25952 5.34610 5.35715 5.36423 5.45891 5.57986 5.63483 5.66581 5.69093 5.85241 6.09609 6.41728 6.66742 7.18124 7.90155 8.40338 9.19447 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.026500 B = 0.002408 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.339486 B =11623.350796 C =11973.603036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.141 3.859 3 H 0.093 0.907 4 C -0.035 4.035 5 C 0.221 3.779 6 N -0.510 5.510 7 N -1.002 6.002 8 C 0.078 3.922 9 S 2.790 3.210 10 O -1.015 7.015 11 O -1.008 7.008 12 N -1.116 6.116 13 C 0.131 3.869 14 C -0.076 4.076 15 C -0.121 4.121 16 C 0.140 3.860 17 N -0.612 5.612 18 C -0.265 4.265 19 H 0.059 0.941 20 C -0.048 4.048 21 N -0.932 5.932 22 Si 0.964 3.036 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.279 1.279 26 C 0.175 3.825 27 C -0.122 4.122 28 H 0.061 0.939 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.147 0.853 32 H 0.165 0.835 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.120 0.880 36 H 0.422 0.578 37 H 0.098 0.902 38 H 0.064 0.936 39 H 0.080 0.920 40 H 0.046 0.954 41 H 0.072 0.928 42 H 0.017 0.983 43 H 0.043 0.957 44 H 0.251 0.749 45 H -0.001 1.001 46 H 0.052 0.948 47 H 0.084 0.916 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.389 -6.640 -25.850 26.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.035 3.965 3 H 0.111 0.889 4 C -0.076 4.076 5 C -0.095 4.095 6 N -0.188 5.188 7 N -0.845 5.845 8 C -0.066 4.066 9 S 2.799 3.201 10 O -0.998 6.998 11 O -0.992 6.992 12 N -0.879 5.879 13 C 0.005 3.995 14 C -0.096 4.096 15 C -0.160 4.160 16 C 0.014 3.986 17 N -0.336 5.336 18 C -0.395 4.395 19 H 0.077 0.923 20 C -0.244 4.244 21 N -0.578 5.578 22 Si 0.792 3.208 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.205 1.205 26 C 0.049 3.951 27 C -0.161 4.161 28 H 0.080 0.920 29 H 0.114 0.886 30 H 0.106 0.894 31 H 0.165 0.835 32 H 0.183 0.817 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.139 0.861 36 H 0.257 0.743 37 H 0.116 0.884 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.065 0.935 41 H 0.091 0.909 42 H 0.034 0.966 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.017 0.983 46 H 0.070 0.930 47 H 0.102 0.898 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.149 -6.695 -25.855 26.732 hybrid contribution -0.446 0.400 1.644 1.750 sum 0.704 -6.295 -24.211 25.026 Atomic orbital electron populations 1.22153 0.90228 1.04864 1.04219 1.21173 0.97450 0.96044 0.81873 0.88868 1.20268 0.78573 1.07200 1.01591 1.30241 0.96456 0.91403 0.91417 1.81279 1.15885 1.10939 1.10699 1.57790 1.69693 1.21993 1.35002 1.21790 1.03646 0.78640 1.02548 1.01446 0.73461 0.72342 0.72837 1.93572 1.69924 1.61858 1.74411 1.93578 1.75440 1.56864 1.73337 1.55675 1.62390 1.18193 1.51664 1.21403 0.94858 0.92467 0.90772 1.21140 0.95869 0.98534 0.94035 1.21959 0.97581 0.99624 0.96867 1.21045 0.91359 0.92842 0.93320 1.44336 1.26663 1.59545 1.03080 1.19432 0.92015 1.43966 0.84125 0.92341 1.25733 0.95615 1.01665 1.01341 1.70161 0.97881 1.51272 1.38488 0.85398 0.76354 0.78697 0.80328 1.20484 1.21714 1.20538 1.20628 0.88801 0.94001 0.91666 1.22007 0.98951 0.98060 0.97130 0.91954 0.88630 0.89406 0.83508 0.81729 0.92597 0.91506 0.86138 0.74251 0.88355 0.91725 0.90171 0.93466 0.90932 0.96550 0.93835 0.94033 0.98264 0.92972 0.89764 0.93209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.05 9.17 71.98 0.66 0.61 16 2 C 0.14 0.94 2.60 44.99 0.12 1.06 16 3 H 0.09 0.94 6.91 -2.39 -0.02 0.92 16 4 C -0.04 -0.12 5.14 28.79 0.15 0.03 16 5 C 0.22 3.81 15.14 89.44 1.35 5.16 16 6 N -0.51 -13.91 18.54 20.01 0.37 -13.54 16 7 N -1.00 -12.45 2.83 -516.52 -1.46 -13.91 16 8 C 0.08 0.62 9.25 127.77 1.18 1.81 16 9 S 2.79 63.59 6.09 -56.49 -0.34 63.24 16 10 O -1.01 -31.45 16.68 -128.00 -2.14 -33.59 16 11 O -1.01 -28.94 16.70 -128.00 -2.14 -31.07 16 12 N -1.12 -21.43 5.56 -187.49 -1.04 -22.48 16 13 C 0.13 2.61 5.64 86.38 0.49 3.10 16 14 C -0.08 -2.05 2.18 -10.77 -0.02 -2.07 16 15 C -0.12 -3.94 5.26 30.67 0.16 -3.78 16 16 C 0.14 5.77 6.52 86.36 0.56 6.34 16 17 N -0.61 -30.50 2.99 -699.10 -2.09 -32.59 16 18 C -0.26 -14.72 9.58 84.03 0.81 -13.92 16 19 H 0.06 3.23 7.88 -2.91 -0.02 3.20 16 20 C -0.05 -2.68 4.92 84.86 0.42 -2.26 16 21 N -0.93 -54.37 11.19 21.65 0.24 -54.13 16 22 Si 0.96 44.90 29.59 68.60 2.03 46.93 16 23 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 24 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 25 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 26 C 0.17 7.97 5.30 86.36 0.46 8.43 16 27 C -0.12 -3.96 5.36 30.67 0.16 -3.79 16 28 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 29 H 0.09 -0.31 8.14 -2.38 -0.02 -0.33 16 30 H 0.09 -0.27 6.66 -2.39 -0.02 -0.28 16 31 H 0.15 -0.38 7.51 -2.39 -0.02 -0.39 16 32 H 0.17 -0.76 8.14 -2.39 -0.02 -0.78 16 33 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 34 H 0.07 0.69 7.79 -2.39 -0.02 0.67 16 35 H 0.12 -0.03 6.43 -2.39 -0.02 -0.05 16 36 H 0.42 7.36 8.37 -96.74 -0.81 6.55 16 37 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.06 1.47 7.75 -2.39 -0.02 1.46 16 39 H 0.08 2.06 8.14 -2.39 -0.02 2.05 16 40 H 0.05 1.66 8.14 -2.39 -0.02 1.65 16 41 H 0.07 2.02 7.50 -2.39 -0.02 2.00 16 42 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 43 H 0.04 1.82 7.93 -2.39 -0.02 1.81 16 44 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 45 H 0.00 -0.03 8.14 -2.38 -0.02 -0.05 16 46 H 0.05 2.74 6.07 -2.39 -0.01 2.72 16 47 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 48 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 Total: -1.00 -86.28 396.24 0.07 -86.21 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: 0.15 Total: 4.21 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 6.49 Total: 0.73 kcal Atomic # 7 Polarization: -132.67 SS G_CDS: -3.98 Total: -136.65 kcal Atomic # 8 Polarization: -60.39 SS G_CDS: -4.27 Total: -64.66 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 16 Polarization: 63.59 SS G_CDS: -0.34 Total: 63.24 kcal Total: -86.28 0.07 -86.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337781337.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.155 kcal (2) G-P(sol) polarization free energy of solvation -86.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds