Wall clock time and date at job start Wed Apr 1 2020 03:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47005 * 2 1 4 4 C 1.53007 * 109.46755 * 119.99641 * 2 1 3 5 5 C 1.47202 * 109.46856 * 185.00058 * 4 2 1 6 6 N 3.43555 * 154.82237 * 111.56201 * 2 1 3 7 7 N 1.46497 * 109.47508 * 239.99222 * 2 1 3 8 8 C 1.46496 * 120.00151 * 300.00779 * 7 2 1 9 9 S 1.65603 * 119.99756 * 119.99985 * 7 2 1 10 10 O 1.42097 * 106.40052 * 156.46695 * 9 7 2 11 11 O 1.42097 * 106.40178 * 23.54442 * 9 7 2 12 12 N 1.65602 * 107.21684 * 270.00324 * 9 7 2 13 13 C 1.46499 * 119.99903 * 65.00650 * 12 9 7 14 14 C 1.52998 * 109.47262 * 164.99792 * 13 12 9 15 15 C 1.53045 * 109.45930 * 295.02405 * 14 13 12 16 16 C 1.53188 * 109.31221 * 178.60097 * 15 14 13 17 17 N 1.46930 * 108.76810 * 54.65333 * 16 15 14 18 18 C 1.36941 * 120.62930 * 126.40435 * 17 16 15 19 19 H 1.08000 * 119.99727 * 332.60579 * 18 17 16 20 20 C 1.38805 * 119.99898 * 152.61168 * 18 17 16 21 21 N 1.31618 * 120.00179 * 159.34572 * 20 18 17 22 22 Si 1.86804 * 120.00158 * 339.34380 * 20 18 17 23 23 H 1.48495 * 109.47145 * 92.94090 * 22 20 18 24 24 H 1.48499 * 109.47153 * 212.94583 * 22 20 18 25 25 H 1.48499 * 109.46845 * 332.94546 * 22 20 18 26 26 C 1.46922 * 118.73739 * 306.38283 * 17 16 15 27 27 C 1.53041 * 109.46299 * 174.96682 * 14 13 12 28 28 H 1.08997 * 109.47365 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47308 * 300.00302 * 1 2 3 30 30 H 1.08999 * 109.47159 * 60.00238 * 1 2 3 31 31 H 1.09001 * 109.47262 * 304.99766 * 4 2 1 32 32 H 1.09000 * 109.47221 * 65.00217 * 4 2 1 33 33 H 1.08995 * 109.47031 * 269.99358 * 8 7 2 34 34 H 1.09003 * 109.47442 * 29.99509 * 8 7 2 35 35 H 1.09000 * 109.47428 * 149.99794 * 8 7 2 36 36 H 0.97003 * 120.00234 * 244.99577 * 12 9 7 37 37 H 1.09000 * 109.47156 * 284.99539 * 13 12 9 38 38 H 1.09001 * 109.47676 * 44.99340 * 13 12 9 39 39 H 1.09002 * 109.46314 * 54.99215 * 14 13 12 40 40 H 1.09001 * 109.49450 * 298.56775 * 15 14 13 41 41 H 1.09001 * 109.49268 * 58.66405 * 15 14 13 42 42 H 1.09003 * 109.60106 * 294.86350 * 16 15 14 43 43 H 1.09001 * 109.70470 * 174.50870 * 16 15 14 44 44 H 0.96998 * 119.99958 * 180.02562 * 21 20 18 45 45 H 1.08990 * 109.59048 * 293.81883 * 26 17 16 46 46 H 1.09000 * 109.69947 * 173.46010 * 26 17 16 47 47 H 1.08994 * 109.49689 * 301.33921 * 27 14 13 48 48 H 1.09002 * 109.49414 * 61.40003 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5070 -0.6173 1.3114 6 7 4.6392 -0.5371 1.3593 7 7 2.0184 -0.6907 -1.1960 8 6 1.6645 -2.0933 -1.4278 9 16 2.9705 0.1140 -2.2861 10 8 3.7119 -0.8791 -2.9813 11 8 3.5795 1.1828 -1.5748 12 7 1.9608 0.8088 -3.3998 13 6 1.0293 1.8617 -2.9876 14 6 0.4948 2.5834 -4.2262 15 6 1.6440 3.3106 -4.9281 16 6 1.1118 4.0030 -6.1867 17 7 -0.0109 4.8723 -5.8091 18 6 -0.0159 6.1966 -6.1576 19 1 0.9175 6.7210 -6.2997 20 6 -1.2205 6.8648 -6.3282 21 7 -1.2600 8.1786 -6.2580 22 14 -2.7856 5.8997 -6.6574 23 1 -3.4770 5.6246 -5.3723 24 1 -3.6789 6.6916 -7.5406 25 1 -2.4449 4.6156 -7.3209 26 6 -1.1285 4.2935 -5.0509 27 6 -0.5711 3.5976 -3.8052 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6053 -0.2616 2.1371 32 1 1.7516 -1.7715 1.2058 33 1 2.4157 -2.7378 -0.9714 34 1 0.6904 -2.3003 -0.9845 35 1 1.6239 -2.2854 -2.5000 36 1 1.9862 0.5187 -4.3251 37 1 0.1986 1.4175 -2.4391 38 1 1.5476 2.5750 -2.3468 39 1 0.0547 1.8562 -4.9086 40 1 2.0684 4.0553 -4.2548 41 1 2.4136 2.5908 -5.2069 42 1 0.7695 3.2529 -6.8997 43 1 1.9022 4.6025 -6.6385 44 1 -2.1018 8.6455 -6.3768 45 1 -1.6535 3.5672 -5.6711 46 1 -1.8170 5.0834 -4.7509 47 1 -1.3782 3.0822 -3.2846 48 1 -0.1258 4.3393 -3.1421 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337781338.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:32 Heat of formation + Delta-G solvation = -29.537338 kcal Electronic energy + Delta-G solvation = -29473.623743 eV Core-core repulsion = 25498.137125 eV Total energy + Delta-G solvation = -3975.486618 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -38.70330 -38.44162 -37.43913 -36.34094 -36.02524 -35.50303 -32.71973 -32.36279 -30.96559 -30.32759 -28.73329 -26.97337 -26.72510 -23.82241 -22.71831 -22.03818 -21.37885 -19.82222 -19.32324 -18.44413 -18.13286 -17.62690 -16.73877 -16.60364 -15.79988 -15.33120 -15.20681 -14.91579 -14.58689 -14.27548 -14.17718 -14.13304 -13.72826 -13.61689 -13.48830 -13.03825 -12.96937 -12.91185 -12.73645 -12.62255 -12.34325 -12.29501 -12.24035 -12.14886 -12.09354 -12.08202 -11.76349 -11.68443 -11.36270 -11.31515 -10.85418 -10.64684 -10.51456 -10.15249 -9.98559 -9.74585 -9.65945 -9.53865 -9.43295 -8.63162 -6.98409 -5.95564 -3.31172 0.31769 2.44052 2.51140 2.60084 3.28540 3.30012 3.46175 3.48815 3.60126 4.00509 4.16408 4.47322 4.50179 4.51294 4.70740 4.78351 4.91245 4.93039 4.96536 5.00414 5.03247 5.09536 5.16726 5.22669 5.30830 5.36605 5.42109 5.58000 5.64165 5.67243 5.79676 5.85614 5.93582 6.05609 6.07402 6.17520 6.34132 6.36898 6.47288 6.60896 6.65410 6.68600 6.81268 6.96031 7.30031 7.96220 8.32732 8.94113 9.71585 10.09428 11.20615 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.020578 B = 0.002726 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.350616 B =10269.042883 C =10599.245398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.144 3.856 3 H 0.110 0.890 4 C -0.033 4.033 5 C 0.195 3.805 6 N -0.422 5.422 7 N -1.009 6.009 8 C 0.091 3.909 9 S 2.780 3.220 10 O -0.978 6.978 11 O -0.968 6.968 12 N -1.122 6.122 13 C 0.120 3.880 14 C -0.084 4.084 15 C -0.131 4.131 16 C 0.148 3.852 17 N -0.606 5.606 18 C -0.259 4.259 19 H 0.085 0.915 20 C 0.022 3.978 21 N -0.909 5.909 22 Si 0.884 3.116 23 H -0.289 1.289 24 H -0.304 1.304 25 H -0.272 1.272 26 C 0.126 3.874 27 C -0.128 4.128 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.123 0.877 32 H 0.113 0.887 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.417 0.583 37 H 0.063 0.937 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.021 0.979 43 H 0.063 0.937 44 H 0.262 0.738 45 H 0.024 0.976 46 H 0.073 0.927 47 H 0.055 0.945 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.501 -22.921 14.483 27.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.037 3.963 3 H 0.128 0.872 4 C -0.075 4.075 5 C -0.123 4.123 6 N -0.099 5.099 7 N -0.849 5.849 8 C -0.054 4.054 9 S 2.788 3.212 10 O -0.961 6.961 11 O -0.951 6.951 12 N -0.884 5.884 13 C -0.006 4.006 14 C -0.104 4.104 15 C -0.170 4.170 16 C 0.022 3.978 17 N -0.330 5.330 18 C -0.387 4.387 19 H 0.103 0.897 20 C -0.177 4.177 21 N -0.552 5.552 22 Si 0.715 3.285 23 H -0.217 1.217 24 H -0.233 1.233 25 H -0.197 1.197 26 C 0.001 3.999 27 C -0.168 4.168 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.140 0.860 32 H 0.131 0.869 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.251 0.749 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.039 0.961 43 H 0.081 0.919 44 H 0.072 0.928 45 H 0.041 0.959 46 H 0.091 0.909 47 H 0.074 0.926 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.083 -22.529 14.733 26.999 hybrid contribution -1.850 -0.658 -0.657 2.070 sum 0.233 -23.187 14.076 27.126 Atomic orbital electron populations 1.22230 0.92982 1.03416 1.03822 1.20952 0.95576 0.97020 0.82783 0.87181 1.19715 0.82450 1.04702 1.00616 1.29079 0.95310 0.93961 0.93954 1.81266 1.12979 1.07874 1.07743 1.58071 1.70266 1.21355 1.35201 1.21459 1.01477 0.80165 1.02290 1.02103 0.73097 0.73156 0.72839 1.93621 1.68707 1.60174 1.73645 1.93640 1.73263 1.55112 1.73113 1.55870 1.57584 1.51203 1.23730 1.21537 0.91736 0.88790 0.98514 1.21246 0.96933 0.97043 0.95221 1.22076 0.96412 0.99084 0.99441 1.20928 0.90844 0.92916 0.93138 1.44360 1.19592 1.07422 1.61621 1.18940 0.94174 0.83265 1.42323 0.89736 1.25289 0.97625 0.95185 0.99595 1.69841 1.26367 1.06806 1.52200 0.86931 0.84056 0.79997 0.77544 1.21658 1.23251 1.19661 1.21309 0.91188 0.96452 0.90985 1.22037 0.97200 0.97763 0.99794 0.91311 0.90478 0.90941 0.85961 0.86855 0.92466 0.90310 0.90848 0.74873 0.91913 0.90397 0.91058 0.91578 0.92736 0.96142 0.91892 0.92787 0.95865 0.90889 0.92629 0.91294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.44 9.17 37.16 0.34 -0.10 16 2 C 0.14 0.74 2.60 -67.93 -0.18 0.57 16 3 H 0.11 0.73 6.91 -51.93 -0.36 0.37 16 4 C -0.03 -0.12 5.14 -29.51 -0.15 -0.28 16 5 C 0.20 1.83 15.14 -20.76 -0.31 1.51 16 6 N -0.42 -5.70 18.54 42.15 0.78 -4.91 16 7 N -1.01 -7.15 2.83 -114.61 -0.32 -7.48 16 8 C 0.09 0.44 9.25 59.84 0.55 0.99 16 9 S 2.78 31.56 6.09 -107.50 -0.66 30.91 16 10 O -0.98 -13.93 17.21 -57.17 -0.98 -14.92 16 11 O -0.97 -14.27 16.17 -57.17 -0.92 -15.19 16 12 N -1.12 -10.99 5.56 -10.61 -0.06 -11.05 16 13 C 0.12 1.23 5.64 -4.04 -0.02 1.20 16 14 C -0.08 -1.11 2.18 -90.58 -0.20 -1.31 16 15 C -0.13 -2.02 5.26 -26.61 -0.14 -2.16 16 16 C 0.15 2.81 6.52 -3.71 -0.02 2.78 16 17 N -0.61 -13.95 2.77 -172.32 -0.48 -14.43 16 18 C -0.26 -7.14 10.04 -15.06 -0.15 -7.29 16 19 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 20 C 0.02 0.62 5.23 -17.43 -0.09 0.53 16 21 N -0.91 -27.67 13.97 55.49 0.78 -26.89 16 22 Si 0.88 21.91 24.35 -169.99 -4.14 17.77 16 23 H -0.29 -6.81 6.62 56.52 0.37 -6.44 16 24 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 25 H -0.27 -6.60 6.63 56.52 0.37 -6.22 16 26 C 0.13 2.58 4.20 -3.71 -0.02 2.57 16 27 C -0.13 -1.97 5.36 -26.61 -0.14 -2.11 16 28 H 0.07 0.09 6.66 -51.93 -0.35 -0.25 16 29 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 30 H 0.07 0.27 6.18 -51.93 -0.32 -0.06 16 31 H 0.12 0.09 8.14 -51.93 -0.42 -0.34 16 32 H 0.11 0.15 7.51 -51.93 -0.39 -0.24 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.08 0.15 6.43 -51.93 -0.33 -0.19 16 35 H 0.07 0.37 7.79 -51.93 -0.40 -0.03 16 36 H 0.42 3.71 8.37 -34.48 -0.29 3.43 16 37 H 0.06 0.47 6.18 -51.93 -0.32 0.15 16 38 H 0.08 0.87 7.75 -51.93 -0.40 0.47 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.05 0.73 7.50 -51.93 -0.39 0.34 16 42 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 44 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 45 H 0.02 0.47 7.07 -51.93 -0.37 0.10 16 46 H 0.07 1.66 4.50 -51.93 -0.23 1.42 16 47 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 48 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 385.87 15.07 5.81 5.81 Total: -1.00 -38.23 385.87 -8.29 -46.52 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -7.56 Total: -3.04 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -0.53 Total: -3.09 kcal Atomic # 7 Polarization: -65.46 SS G_CDS: 0.70 Total: -64.76 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -1.91 Total: -30.11 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.14 Total: 17.77 kcal Atomic # 16 Polarization: 31.56 SS G_CDS: -0.66 Total: 30.91 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -38.23 -8.29 -46.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337781338.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.983 kcal (2) G-P(sol) polarization free energy of solvation -38.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds