Wall clock time and date at job start Wed Apr 1 2020 03:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47005 * 2 1 4 4 C 1.53007 * 109.46755 * 119.99641 * 2 1 3 5 5 C 1.47202 * 109.46856 * 185.00058 * 4 2 1 6 6 N 3.43555 * 154.82237 * 111.56201 * 2 1 3 7 7 N 1.46497 * 109.47508 * 239.99222 * 2 1 3 8 8 C 1.46496 * 120.00151 * 300.00779 * 7 2 1 9 9 S 1.65603 * 119.99756 * 119.99985 * 7 2 1 10 10 O 1.42097 * 106.40052 * 156.46695 * 9 7 2 11 11 O 1.42097 * 106.40178 * 23.54442 * 9 7 2 12 12 N 1.65602 * 107.21684 * 270.00324 * 9 7 2 13 13 C 1.46499 * 119.99903 * 65.00650 * 12 9 7 14 14 C 1.52998 * 109.47262 * 164.99792 * 13 12 9 15 15 C 1.53045 * 109.45930 * 295.02405 * 14 13 12 16 16 C 1.53188 * 109.31221 * 178.60097 * 15 14 13 17 17 N 1.46930 * 108.76810 * 54.65333 * 16 15 14 18 18 C 1.36941 * 120.62930 * 126.40435 * 17 16 15 19 19 H 1.08000 * 119.99727 * 332.60579 * 18 17 16 20 20 C 1.38805 * 119.99898 * 152.61168 * 18 17 16 21 21 N 1.31618 * 120.00179 * 159.34572 * 20 18 17 22 22 Si 1.86804 * 120.00158 * 339.34380 * 20 18 17 23 23 H 1.48495 * 109.47145 * 92.94090 * 22 20 18 24 24 H 1.48499 * 109.47153 * 212.94583 * 22 20 18 25 25 H 1.48499 * 109.46845 * 332.94546 * 22 20 18 26 26 C 1.46922 * 118.73739 * 306.38283 * 17 16 15 27 27 C 1.53041 * 109.46299 * 174.96682 * 14 13 12 28 28 H 1.08997 * 109.47365 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47308 * 300.00302 * 1 2 3 30 30 H 1.08999 * 109.47159 * 60.00238 * 1 2 3 31 31 H 1.09001 * 109.47262 * 304.99766 * 4 2 1 32 32 H 1.09000 * 109.47221 * 65.00217 * 4 2 1 33 33 H 1.08995 * 109.47031 * 269.99358 * 8 7 2 34 34 H 1.09003 * 109.47442 * 29.99509 * 8 7 2 35 35 H 1.09000 * 109.47428 * 149.99794 * 8 7 2 36 36 H 0.97003 * 120.00234 * 244.99577 * 12 9 7 37 37 H 1.09000 * 109.47156 * 284.99539 * 13 12 9 38 38 H 1.09001 * 109.47676 * 44.99340 * 13 12 9 39 39 H 1.09002 * 109.46314 * 54.99215 * 14 13 12 40 40 H 1.09001 * 109.49450 * 298.56775 * 15 14 13 41 41 H 1.09001 * 109.49268 * 58.66405 * 15 14 13 42 42 H 1.09003 * 109.60106 * 294.86350 * 16 15 14 43 43 H 1.09001 * 109.70470 * 174.50870 * 16 15 14 44 44 H 0.96998 * 119.99958 * 180.02562 * 21 20 18 45 45 H 1.08990 * 109.59048 * 293.81883 * 26 17 16 46 46 H 1.09000 * 109.69947 * 173.46010 * 26 17 16 47 47 H 1.08994 * 109.49689 * 301.33921 * 27 14 13 48 48 H 1.09002 * 109.49414 * 61.40003 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5070 -0.6173 1.3114 6 7 4.6392 -0.5371 1.3593 7 7 2.0184 -0.6907 -1.1960 8 6 1.6645 -2.0933 -1.4278 9 16 2.9705 0.1140 -2.2861 10 8 3.7119 -0.8791 -2.9813 11 8 3.5795 1.1828 -1.5748 12 7 1.9608 0.8088 -3.3998 13 6 1.0293 1.8617 -2.9876 14 6 0.4948 2.5834 -4.2262 15 6 1.6440 3.3106 -4.9281 16 6 1.1118 4.0030 -6.1867 17 7 -0.0109 4.8723 -5.8091 18 6 -0.0159 6.1966 -6.1576 19 1 0.9175 6.7210 -6.2997 20 6 -1.2205 6.8648 -6.3282 21 7 -1.2600 8.1786 -6.2580 22 14 -2.7856 5.8997 -6.6574 23 1 -3.4770 5.6246 -5.3723 24 1 -3.6789 6.6916 -7.5406 25 1 -2.4449 4.6156 -7.3209 26 6 -1.1285 4.2935 -5.0509 27 6 -0.5711 3.5976 -3.8052 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6053 -0.2616 2.1371 32 1 1.7516 -1.7715 1.2058 33 1 2.4157 -2.7378 -0.9714 34 1 0.6904 -2.3003 -0.9845 35 1 1.6239 -2.2854 -2.5000 36 1 1.9862 0.5187 -4.3251 37 1 0.1986 1.4175 -2.4391 38 1 1.5476 2.5750 -2.3468 39 1 0.0547 1.8562 -4.9086 40 1 2.0684 4.0553 -4.2548 41 1 2.4136 2.5908 -5.2069 42 1 0.7695 3.2529 -6.8997 43 1 1.9022 4.6025 -6.6385 44 1 -2.1018 8.6455 -6.3768 45 1 -1.6535 3.5672 -5.6711 46 1 -1.8170 5.0834 -4.7509 47 1 -1.3782 3.0822 -3.2846 48 1 -0.1258 4.3393 -3.1421 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337781338.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:31 Heat of formation + Delta-G solvation = -60.331915 kcal Electronic energy + Delta-G solvation = -29474.959096 eV Core-core repulsion = 25498.137125 eV Total energy + Delta-G solvation = -3976.821971 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.80728 -39.13372 -38.40661 -37.09397 -37.01190 -36.74045 -34.39411 -32.76916 -32.60153 -31.81483 -29.01292 -28.14419 -27.34561 -25.42451 -24.12750 -22.82437 -22.48417 -20.97304 -20.26724 -19.17179 -18.81665 -18.61576 -18.34464 -17.50964 -17.04384 -16.26944 -15.99632 -15.89801 -15.70880 -15.40002 -15.14900 -15.11406 -14.77311 -14.69122 -14.49430 -14.20733 -13.97294 -13.80950 -13.77300 -13.59677 -13.49156 -13.33424 -13.26623 -13.13735 -12.88220 -12.81672 -12.55142 -12.49181 -12.46048 -12.21836 -12.15479 -12.07696 -11.68884 -11.59824 -11.53826 -11.22785 -11.18886 -10.63819 -10.39191 -10.11512 -8.89285 -8.14296 -5.46009 -0.49824 1.31890 1.44702 1.54342 1.78452 1.85278 1.90357 2.44352 2.51747 3.09295 3.11581 3.25419 3.39890 3.73803 3.82265 3.94159 3.97931 4.09928 4.20936 4.37583 4.42628 4.45428 4.54871 4.58486 4.67228 4.73261 4.79744 4.80318 4.82261 4.86591 4.89791 4.98232 5.04369 5.06854 5.12418 5.23032 5.25405 5.27523 5.32976 5.37899 5.63867 5.64815 5.67904 5.89549 6.09389 6.14621 6.66455 6.96109 7.66575 8.05726 9.06182 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.020578 B = 0.002726 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.350616 B =10269.042883 C =10599.245398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.136 3.864 3 H 0.090 0.910 4 C -0.034 4.034 5 C 0.221 3.779 6 N -0.510 5.510 7 N -1.001 6.001 8 C 0.082 3.918 9 S 2.789 3.211 10 O -1.013 7.013 11 O -1.011 7.011 12 N -1.116 6.116 13 C 0.126 3.874 14 C -0.078 4.078 15 C -0.125 4.125 16 C 0.142 3.858 17 N -0.622 5.622 18 C -0.251 4.251 19 H 0.042 0.958 20 C -0.041 4.041 21 N -0.962 5.962 22 Si 0.956 3.044 23 H -0.266 1.266 24 H -0.315 1.315 25 H -0.259 1.259 26 C 0.116 3.884 27 C -0.120 4.120 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.066 0.934 31 H 0.163 0.837 32 H 0.149 0.851 33 H 0.053 0.947 34 H 0.119 0.881 35 H 0.069 0.931 36 H 0.422 0.578 37 H 0.103 0.897 38 H 0.064 0.936 39 H 0.092 0.908 40 H 0.043 0.957 41 H 0.076 0.924 42 H 0.039 0.961 43 H 0.043 0.957 44 H 0.261 0.739 45 H 0.038 0.962 46 H 0.048 0.952 47 H 0.099 0.901 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.802 -26.879 16.154 31.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.029 3.971 3 H 0.109 0.891 4 C -0.075 4.075 5 C -0.096 4.096 6 N -0.188 5.188 7 N -0.844 5.844 8 C -0.062 4.062 9 S 2.798 3.202 10 O -0.997 6.997 11 O -0.994 6.994 12 N -0.879 5.879 13 C 0.001 3.999 14 C -0.098 4.098 15 C -0.164 4.164 16 C 0.017 3.983 17 N -0.347 5.347 18 C -0.381 4.381 19 H 0.060 0.940 20 C -0.235 4.235 21 N -0.609 5.609 22 Si 0.784 3.216 23 H -0.192 1.192 24 H -0.245 1.245 25 H -0.183 1.183 26 C -0.008 4.008 27 C -0.160 4.160 28 H 0.109 0.891 29 H 0.114 0.886 30 H 0.085 0.915 31 H 0.180 0.820 32 H 0.167 0.833 33 H 0.072 0.928 34 H 0.138 0.862 35 H 0.088 0.912 36 H 0.258 0.742 37 H 0.121 0.879 38 H 0.083 0.917 39 H 0.110 0.890 40 H 0.062 0.938 41 H 0.095 0.905 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.070 0.930 45 H 0.056 0.944 46 H 0.066 0.934 47 H 0.117 0.883 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.200 -26.542 16.414 31.231 hybrid contribution -0.763 0.576 -1.161 1.504 sum -1.963 -25.967 15.253 30.179 Atomic orbital electron populations 1.22232 0.90036 1.05112 1.04457 1.21220 0.97664 0.96040 0.82139 0.89149 1.20256 0.78535 1.07218 1.01529 1.30254 0.96476 0.91405 0.91435 1.81282 1.15936 1.10920 1.10674 1.57787 1.69698 1.22122 1.34837 1.21740 1.03487 0.78335 1.02613 1.01481 0.73418 0.72415 0.72908 1.93567 1.70382 1.60991 1.74778 1.93588 1.74948 1.56882 1.73967 1.55658 1.57203 1.51121 1.23950 1.21493 0.92734 0.88671 0.97041 1.21186 0.95263 0.96729 0.96627 1.21985 0.98016 0.98985 0.97448 1.21092 0.89337 0.92613 0.95264 1.44500 1.21408 1.06228 1.62603 1.18851 0.92674 0.85450 1.41121 0.94034 1.25991 1.01365 0.95987 1.00151 1.69994 1.27264 1.08839 1.54760 0.85770 0.79413 0.78429 0.77945 1.19215 1.24475 1.18345 1.21455 0.90223 0.96166 0.92984 1.21927 0.98940 0.97900 0.97211 0.89073 0.88645 0.91493 0.81953 0.83296 0.92779 0.86242 0.91230 0.74185 0.87887 0.91710 0.89000 0.93833 0.90539 0.94343 0.93877 0.92991 0.94406 0.93392 0.88289 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.09 9.17 71.98 0.66 0.75 16 2 C 0.14 0.88 2.60 44.99 0.12 0.99 16 3 H 0.09 0.99 6.91 -2.39 -0.02 0.97 16 4 C -0.03 -0.11 5.14 28.79 0.15 0.04 16 5 C 0.22 3.85 15.14 89.44 1.35 5.20 16 6 N -0.51 -14.08 18.54 20.01 0.37 -13.71 16 7 N -1.00 -11.11 2.83 -516.52 -1.46 -12.58 16 8 C 0.08 0.47 9.25 127.77 1.18 1.65 16 9 S 2.79 60.01 6.09 -56.49 -0.34 59.67 16 10 O -1.01 -28.48 17.21 -128.00 -2.20 -30.68 16 11 O -1.01 -29.97 16.17 -128.00 -2.07 -32.04 16 12 N -1.12 -18.97 5.56 -187.49 -1.04 -20.01 16 13 C 0.13 2.13 5.64 86.38 0.49 2.62 16 14 C -0.08 -1.78 2.18 -10.77 -0.02 -1.80 16 15 C -0.13 -3.71 5.26 30.67 0.16 -3.55 16 16 C 0.14 5.33 6.52 86.36 0.56 5.89 16 17 N -0.62 -28.56 2.77 -699.11 -1.94 -30.49 16 18 C -0.25 -14.38 10.04 84.03 0.84 -13.54 16 19 H 0.04 2.66 8.06 -2.91 -0.02 2.63 16 20 C -0.04 -2.38 5.23 84.86 0.44 -1.94 16 21 N -0.96 -60.93 13.97 21.65 0.30 -60.62 16 22 Si 0.96 45.47 24.35 68.60 1.67 47.14 16 23 H -0.27 -11.56 6.62 99.48 0.66 -10.90 16 24 H -0.32 -15.46 7.11 99.48 0.71 -14.75 16 25 H -0.26 -11.64 6.63 99.48 0.66 -10.98 16 26 C 0.12 4.47 4.20 86.36 0.36 4.83 16 27 C -0.12 -3.28 5.36 30.67 0.16 -3.12 16 28 H 0.09 -0.42 6.66 -2.39 -0.02 -0.43 16 29 H 0.09 -0.33 8.14 -2.39 -0.02 -0.34 16 30 H 0.07 0.08 6.18 -2.39 -0.01 0.07 16 31 H 0.16 -0.66 8.14 -2.39 -0.02 -0.68 16 32 H 0.15 -0.48 7.51 -2.39 -0.02 -0.50 16 33 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.12 -0.29 6.43 -2.39 -0.02 -0.31 16 35 H 0.07 0.48 7.79 -2.39 -0.02 0.46 16 36 H 0.42 6.33 8.37 -96.74 -0.81 5.52 16 37 H 0.10 0.97 6.18 -2.39 -0.01 0.96 16 38 H 0.06 1.31 7.75 -2.39 -0.02 1.29 16 39 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.08 1.92 7.50 -2.39 -0.02 1.90 16 42 H 0.04 1.32 8.14 -2.39 -0.02 1.31 16 43 H 0.04 1.74 7.93 -2.39 -0.02 1.72 16 44 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 45 H 0.04 1.36 7.07 -2.39 -0.02 1.35 16 46 H 0.05 2.08 4.50 -2.39 -0.01 2.07 16 47 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 48 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -91.81 385.87 -0.18 -91.99 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: 0.07 Total: 3.31 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: 6.46 Total: -1.97 kcal Atomic # 7 Polarization: -133.65 SS G_CDS: -3.77 Total: -137.42 kcal Atomic # 8 Polarization: -58.44 SS G_CDS: -4.27 Total: -62.72 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.67 Total: 47.14 kcal Atomic # 16 Polarization: 60.01 SS G_CDS: -0.34 Total: 59.67 kcal Total: -91.81 -0.18 -91.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337781338.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.659 kcal (2) G-P(sol) polarization free energy of solvation -91.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds