Wall clock time and date at job start Wed Apr 1 2020 04:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99987 * 2 1 4 4 H 1.48496 * 109.47510 * 270.00286 * 3 2 1 5 5 H 1.48499 * 109.47179 * 30.00721 * 3 2 1 6 6 H 1.48509 * 109.47169 * 150.00129 * 3 2 1 7 7 C 1.37875 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99918 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00097 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.47059 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47054 * 180.02562 * 10 9 7 12 12 N 1.46491 * 109.46870 * 180.02562 * 11 10 9 13 13 C 1.34785 * 119.99830 * 180.02562 * 12 11 10 14 14 O 1.21592 * 119.99627 * 359.97438 * 13 12 11 15 15 N 1.34774 * 119.99981 * 179.97438 * 13 12 11 16 16 C 1.46498 * 119.99788 * 179.97438 * 15 13 12 17 17 C 1.53006 * 109.47277 * 180.02562 * 16 15 13 18 18 C 1.50696 * 109.47154 * 184.93511 * 17 16 15 19 19 N 1.30733 * 126.36510 * 95.35822 * 18 17 16 20 20 N 1.28423 * 110.64927 * 180.02562 * 19 18 17 21 21 N 1.28949 * 110.20255 * 359.97438 * 20 19 18 22 22 N 1.35067 * 126.36180 * 275.40010 * 18 17 16 23 23 C 1.40262 * 127.38899 * 359.70508 * 22 18 17 24 24 C 1.38821 * 120.06218 * 316.09144 * 23 22 18 25 25 C 1.38133 * 119.92752 * 179.69873 * 24 23 22 26 26 C 1.38274 * 120.06890 * 0.57801 * 25 24 23 27 27 C 1.38274 * 120.12803 * 359.71628 * 26 25 24 28 28 C 1.38122 * 120.06474 * 359.97438 * 27 26 25 29 29 H 0.96997 * 119.99682 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.46745 * 60.00582 * 9 7 2 31 31 H 1.08997 * 109.47296 * 299.99944 * 9 7 2 32 32 H 1.09001 * 109.46678 * 60.00157 * 10 9 7 33 33 H 1.08997 * 109.47066 * 300.00141 * 10 9 7 34 34 H 1.09000 * 109.46705 * 59.99792 * 11 10 9 35 35 H 1.09001 * 109.47137 * 300.00415 * 11 10 9 36 36 H 0.96997 * 120.00447 * 359.97438 * 12 11 10 37 37 H 0.96999 * 119.99998 * 0.02562 * 15 13 12 38 38 H 1.09000 * 109.47074 * 60.00133 * 16 15 13 39 39 H 1.09002 * 109.47780 * 300.00157 * 16 15 13 40 40 H 1.08998 * 109.46658 * 64.93283 * 17 16 15 41 41 H 1.09003 * 109.46926 * 304.93537 * 17 16 15 42 42 H 1.08001 * 120.03538 * 359.97438 * 24 23 22 43 43 H 1.07997 * 119.96077 * 180.31735 * 25 24 23 44 44 H 1.07992 * 119.93404 * 179.74525 * 26 25 24 45 45 H 1.08004 * 119.96877 * 179.97438 * 27 26 25 46 46 H 1.08005 * 120.03008 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.0216 -2.6366 -0.0010 11 6 5.5516 -2.6366 -0.0009 12 7 6.0398 -4.0178 -0.0014 13 6 7.3650 -4.2641 -0.0010 14 8 8.1551 -3.3399 -0.0006 15 7 7.8142 -5.5348 -0.0009 16 6 9.2545 -5.8025 -0.0009 17 6 9.4923 -7.3140 -0.0015 18 6 10.9687 -7.5902 0.1207 19 7 11.6212 -7.8433 1.2249 20 7 12.8678 -8.0326 0.9811 21 7 13.0972 -7.9157 -0.2824 22 7 11.8639 -7.6214 -0.8903 23 6 11.6154 -7.4121 -2.2547 24 6 10.5122 -7.9996 -2.8588 25 6 10.2666 -7.7865 -4.2013 26 6 11.1249 -6.9988 -4.9461 27 6 12.2279 -6.4173 -4.3485 28 6 12.4751 -6.6215 -3.0050 29 1 -0.4849 0.8400 0.0004 30 1 3.8752 -0.6805 0.8889 31 1 3.8746 -0.6801 -0.8911 32 1 3.6578 -3.1506 -0.8908 33 1 3.6585 -3.1502 0.8892 34 1 5.9148 -2.1227 0.8890 35 1 5.9150 -2.1228 -0.8909 36 1 5.4095 -4.7551 -0.0014 37 1 7.1838 -6.2721 -0.0016 38 1 9.7056 -5.3637 0.8890 39 1 9.7057 -5.3638 -0.8909 40 1 9.1187 -7.7401 -0.9326 41 1 8.9674 -7.7647 0.8408 42 1 9.8441 -8.6190 -2.2786 43 1 9.4056 -8.2391 -4.6706 44 1 10.9331 -6.8370 -5.9965 45 1 12.8969 -5.8028 -4.9328 46 1 13.3366 -6.1667 -2.5387 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338042096.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:56 Heat of formation + Delta-G solvation = 109.466941 kcal Electronic energy + Delta-G solvation = -28128.158063 eV Core-core repulsion = 24055.547923 eV Total energy + Delta-G solvation = -4072.610140 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.73497 -40.09965 -39.96651 -36.66061 -35.66151 -35.19279 -33.62537 -33.21128 -31.79940 -31.54394 -30.83668 -30.07191 -27.19304 -25.49993 -24.58343 -23.53416 -22.67926 -22.59004 -21.82769 -21.02284 -20.35284 -19.02505 -18.25870 -17.38797 -17.19484 -16.83184 -16.38249 -16.10893 -15.65014 -15.49579 -15.17849 -15.07189 -14.53532 -14.34629 -14.30571 -14.21163 -13.87304 -13.80884 -13.37089 -13.06230 -12.85382 -12.71151 -12.41757 -12.30052 -12.17058 -11.96152 -11.88567 -11.56427 -11.39698 -11.10050 -10.91271 -10.73982 -10.38985 -10.05125 -9.86172 -9.79831 -9.71465 -9.48805 -9.43853 -9.25044 -8.78527 -8.57368 -6.08300 -4.07100 -0.12080 0.54408 0.78528 1.19787 1.72548 2.50625 2.87577 3.19333 3.29926 3.31921 3.37843 3.42154 3.75850 3.92092 4.09217 4.12418 4.25776 4.36442 4.37117 4.42799 4.53553 4.58354 4.62095 4.76175 4.85749 4.96017 5.18137 5.25824 5.26116 5.34394 5.50055 5.51343 5.52224 5.65213 5.71353 5.75354 5.99241 6.13513 6.16168 6.31814 6.43210 6.61637 6.77672 6.86219 7.20841 7.34234 7.73561 7.91676 7.96618 8.47712 8.57110 8.95323 9.53984 11.04840 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.015717 B = 0.001753 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.097896 B =15964.302335 C =16836.094803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.132 3.868 12 N -0.739 5.739 13 C 0.703 3.297 14 O -0.591 6.591 15 N -0.749 5.749 16 C 0.148 3.852 17 C -0.062 4.062 18 C 0.261 3.739 19 N -0.320 5.320 20 N -0.033 5.033 21 N -0.074 5.074 22 N -0.328 5.328 23 C 0.120 3.880 24 C -0.112 4.112 25 C -0.098 4.098 26 C -0.101 4.101 27 C -0.100 4.100 28 C -0.092 4.092 29 H 0.263 0.737 30 H 0.019 0.981 31 H 0.015 0.985 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.396 0.604 37 H 0.398 0.602 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.105 0.895 41 H 0.122 0.878 42 H 0.135 0.865 43 H 0.140 0.860 44 H 0.136 0.864 45 H 0.139 0.861 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.523 -21.057 -9.441 32.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C 0.009 3.991 12 N -0.393 5.393 13 C 0.402 3.598 14 O -0.468 6.468 15 N -0.407 5.407 16 C 0.022 3.978 17 C -0.103 4.103 18 C -0.016 4.016 19 N -0.170 5.170 20 N -0.028 5.028 21 N -0.058 5.058 22 N -0.119 5.119 23 C 0.028 3.972 24 C -0.133 4.133 25 C -0.117 4.117 26 C -0.119 4.119 27 C -0.119 4.119 28 C -0.112 4.112 29 H 0.073 0.927 30 H 0.037 0.963 31 H 0.033 0.967 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.230 0.770 37 H 0.232 0.768 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.123 0.877 41 H 0.141 0.859 42 H 0.153 0.847 43 H 0.158 0.842 44 H 0.154 0.846 45 H 0.157 0.843 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 25.311 -20.354 -8.601 33.600 hybrid contribution -0.789 0.345 -0.639 1.072 sum 24.522 -20.009 -9.240 32.971 Atomic orbital electron populations 1.69913 1.06308 1.26966 1.50975 1.25034 0.94762 0.99262 0.94471 0.86775 0.80430 0.83511 0.78584 1.20256 1.21374 1.18859 1.21089 0.89297 0.94490 1.51123 0.91015 1.19505 0.97257 0.91455 0.96713 1.21708 0.90599 1.01041 1.01716 1.21541 0.95751 0.79902 1.01910 1.45312 1.04600 1.10228 1.79177 1.15924 0.83147 0.82728 0.77968 1.90943 1.55112 1.43093 1.57676 1.44894 1.06955 1.06836 1.82009 1.20914 0.81606 0.91751 1.03571 1.20658 0.84413 0.98526 1.06682 1.25451 0.96133 0.96485 0.83578 1.74529 0.99072 1.20640 1.22761 1.78091 1.08159 1.10171 1.06379 1.82730 1.01187 1.19511 1.02409 1.48905 1.07064 1.48643 1.07296 1.17496 0.98950 1.01826 0.78880 1.21100 0.96666 0.99645 0.95879 1.21118 0.99829 0.98129 0.92590 1.21459 0.93915 0.95707 1.00848 1.21185 0.97784 0.99202 0.93696 1.21113 0.99066 0.96542 0.94499 0.92694 0.96262 0.96718 0.92139 0.92078 0.91877 0.91932 0.77048 0.76832 0.90485 0.91243 0.87720 0.85950 0.84704 0.84199 0.84616 0.84323 0.84554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 2 C 0.07 1.89 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 7 C -0.52 -14.43 9.66 -34.44 -0.33 -14.77 16 8 H 0.07 2.11 7.99 -52.48 -0.42 1.69 16 9 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 10 C -0.11 -2.00 5.27 -26.73 -0.14 -2.14 16 11 C 0.13 2.10 5.67 -4.04 -0.02 2.08 16 12 N -0.74 -9.25 5.56 -65.23 -0.36 -9.62 16 13 C 0.70 9.37 8.57 -86.91 -0.74 8.63 16 14 O -0.59 -10.70 16.34 5.28 0.09 -10.61 16 15 N -0.75 -6.22 5.56 -65.22 -0.36 -6.58 16 16 C 0.15 1.19 5.66 -4.04 -0.02 1.16 16 17 C -0.06 -0.31 5.53 -27.88 -0.15 -0.47 16 18 C 0.26 2.24 7.22 -155.20 -1.12 1.11 16 19 N -0.32 -3.64 12.15 32.75 0.40 -3.25 16 20 N -0.03 -0.42 13.39 60.35 0.81 0.39 16 21 N -0.07 -0.85 13.84 60.35 0.84 -0.01 16 22 N -0.33 -2.93 3.73 -7.97 -0.03 -2.96 16 23 C 0.12 0.83 6.25 -83.57 -0.52 0.31 16 24 C -0.11 -0.53 8.65 -39.40 -0.34 -0.87 16 25 C -0.10 -0.35 10.04 -39.61 -0.40 -0.75 16 26 C -0.10 -0.37 10.04 -39.55 -0.40 -0.77 16 27 C -0.10 -0.45 10.04 -39.61 -0.40 -0.85 16 28 C -0.09 -0.58 9.91 -39.41 -0.39 -0.97 16 29 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 31 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.40 3.72 8.49 -40.82 -0.35 3.37 16 37 H 0.40 1.86 8.49 -40.82 -0.35 1.51 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.10 0.27 5.30 -51.93 -0.27 -0.01 16 41 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.14 0.39 6.30 -52.49 -0.33 0.06 16 43 H 0.14 0.20 8.06 -52.49 -0.42 -0.22 16 44 H 0.14 0.22 8.06 -52.49 -0.42 -0.20 16 45 H 0.14 0.35 8.06 -52.48 -0.42 -0.08 16 46 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 LS Contribution 393.65 15.07 5.93 5.93 Total: -1.00 -37.15 393.65 -8.09 -45.24 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -6.30 Total: -1.85 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -5.20 Total: -6.87 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: 2.06 Total: -48.66 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.09 Total: -10.61 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -37.15 -8.09 -45.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338042096.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.708 kcal (2) G-P(sol) polarization free energy of solvation -37.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds