Wall clock time and date at job start Wed Apr 1 2020 04:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99987 * 2 1 4 4 H 1.48496 * 109.47510 * 270.00286 * 3 2 1 5 5 H 1.48499 * 109.47179 * 30.00721 * 3 2 1 6 6 H 1.48509 * 109.47169 * 150.00129 * 3 2 1 7 7 C 1.37875 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99918 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00097 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.47059 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47054 * 180.02562 * 10 9 7 12 12 N 1.46491 * 109.46870 * 180.02562 * 11 10 9 13 13 C 1.34785 * 119.99830 * 180.02562 * 12 11 10 14 14 O 1.21592 * 119.99627 * 359.97438 * 13 12 11 15 15 N 1.34774 * 119.99981 * 179.97438 * 13 12 11 16 16 C 1.46498 * 119.99788 * 179.97438 * 15 13 12 17 17 C 1.53006 * 109.47277 * 180.02562 * 16 15 13 18 18 C 1.50696 * 109.47154 * 184.93511 * 17 16 15 19 19 N 1.30733 * 126.36510 * 95.35822 * 18 17 16 20 20 N 1.28423 * 110.64927 * 180.02562 * 19 18 17 21 21 N 1.28949 * 110.20255 * 359.97438 * 20 19 18 22 22 N 1.35067 * 126.36180 * 275.40010 * 18 17 16 23 23 C 1.40262 * 127.38899 * 359.70508 * 22 18 17 24 24 C 1.38821 * 120.06218 * 316.09144 * 23 22 18 25 25 C 1.38133 * 119.92752 * 179.69873 * 24 23 22 26 26 C 1.38274 * 120.06890 * 0.57801 * 25 24 23 27 27 C 1.38274 * 120.12803 * 359.71628 * 26 25 24 28 28 C 1.38122 * 120.06474 * 359.97438 * 27 26 25 29 29 H 0.96997 * 119.99682 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.46745 * 60.00582 * 9 7 2 31 31 H 1.08997 * 109.47296 * 299.99944 * 9 7 2 32 32 H 1.09001 * 109.46678 * 60.00157 * 10 9 7 33 33 H 1.08997 * 109.47066 * 300.00141 * 10 9 7 34 34 H 1.09000 * 109.46705 * 59.99792 * 11 10 9 35 35 H 1.09001 * 109.47137 * 300.00415 * 11 10 9 36 36 H 0.96997 * 120.00447 * 359.97438 * 12 11 10 37 37 H 0.96999 * 119.99998 * 0.02562 * 15 13 12 38 38 H 1.09000 * 109.47074 * 60.00133 * 16 15 13 39 39 H 1.09002 * 109.47780 * 300.00157 * 16 15 13 40 40 H 1.08998 * 109.46658 * 64.93283 * 17 16 15 41 41 H 1.09003 * 109.46926 * 304.93537 * 17 16 15 42 42 H 1.08001 * 120.03538 * 359.97438 * 24 23 22 43 43 H 1.07997 * 119.96077 * 180.31735 * 25 24 23 44 44 H 1.07992 * 119.93404 * 179.74525 * 26 25 24 45 45 H 1.08004 * 119.96877 * 179.97438 * 27 26 25 46 46 H 1.08005 * 120.03008 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.0216 -2.6366 -0.0010 11 6 5.5516 -2.6366 -0.0009 12 7 6.0398 -4.0178 -0.0014 13 6 7.3650 -4.2641 -0.0010 14 8 8.1551 -3.3399 -0.0006 15 7 7.8142 -5.5348 -0.0009 16 6 9.2545 -5.8025 -0.0009 17 6 9.4923 -7.3140 -0.0015 18 6 10.9687 -7.5902 0.1207 19 7 11.6212 -7.8433 1.2249 20 7 12.8678 -8.0326 0.9811 21 7 13.0972 -7.9157 -0.2824 22 7 11.8639 -7.6214 -0.8903 23 6 11.6154 -7.4121 -2.2547 24 6 10.5122 -7.9996 -2.8588 25 6 10.2666 -7.7865 -4.2013 26 6 11.1249 -6.9988 -4.9461 27 6 12.2279 -6.4173 -4.3485 28 6 12.4751 -6.6215 -3.0050 29 1 -0.4849 0.8400 0.0004 30 1 3.8752 -0.6805 0.8889 31 1 3.8746 -0.6801 -0.8911 32 1 3.6578 -3.1506 -0.8908 33 1 3.6585 -3.1502 0.8892 34 1 5.9148 -2.1227 0.8890 35 1 5.9150 -2.1228 -0.8909 36 1 5.4095 -4.7551 -0.0014 37 1 7.1838 -6.2721 -0.0016 38 1 9.7056 -5.3637 0.8890 39 1 9.7057 -5.3638 -0.8909 40 1 9.1187 -7.7401 -0.9326 41 1 8.9674 -7.7647 0.8408 42 1 9.8441 -8.6190 -2.2786 43 1 9.4056 -8.2391 -4.6706 44 1 10.9331 -6.8370 -5.9965 45 1 12.8969 -5.8028 -4.9328 46 1 13.3366 -6.1667 -2.5387 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338042096.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:55 Heat of formation + Delta-G solvation = 82.581268 kcal Electronic energy + Delta-G solvation = -28129.323914 eV Core-core repulsion = 24055.547923 eV Total energy + Delta-G solvation = -4073.775990 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.46238 -41.05028 -40.43173 -37.51279 -36.74721 -36.02026 -35.13058 -34.30864 -33.18836 -32.13794 -31.45032 -30.78761 -28.77498 -26.22542 -25.37282 -24.41003 -23.75285 -23.11586 -22.43573 -22.21483 -21.78089 -19.62294 -19.25498 -18.86336 -18.04155 -17.56941 -17.31760 -17.00305 -16.43967 -16.21551 -16.10766 -16.04667 -15.51981 -15.32128 -15.30322 -15.07047 -14.73233 -14.62177 -14.52790 -13.95858 -13.80360 -13.76253 -13.59913 -13.45951 -12.84449 -12.71774 -12.69716 -12.66433 -12.57160 -12.21778 -11.91606 -11.90054 -11.76356 -11.55583 -11.51531 -11.33008 -11.28004 -10.73709 -10.43276 -10.12676 -9.89284 -9.78872 -8.27150 -6.30450 -0.68707 0.22174 0.26141 0.60829 0.94558 1.38343 1.40639 1.51950 1.63506 2.14249 2.38240 2.52695 2.68528 3.08814 3.20059 3.41610 3.52255 3.58896 3.73731 3.88227 3.98954 4.03499 4.14628 4.15031 4.21561 4.26960 4.32082 4.40356 4.49675 4.55662 4.67494 4.74181 4.89309 4.94555 4.95813 5.08398 5.12911 5.18636 5.34103 5.36184 5.41426 5.45472 5.56405 5.60491 5.67980 5.81295 6.01726 6.30182 6.77799 7.12289 7.14790 7.34345 7.57877 8.89014 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.015717 B = 0.001753 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.097896 B =15964.302335 C =16836.094803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.004 3.996 3 Si 0.945 3.055 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.249 1.249 7 C -0.528 4.528 8 H 0.040 0.960 9 C -0.014 4.014 10 C -0.098 4.098 11 C 0.146 3.854 12 N -0.728 5.728 13 C 0.700 3.300 14 O -0.641 6.641 15 N -0.724 5.724 16 C 0.153 3.847 17 C -0.050 4.050 18 C 0.264 3.736 19 N -0.345 5.345 20 N -0.060 5.060 21 N -0.096 5.096 22 N -0.319 5.319 23 C 0.089 3.911 24 C -0.111 4.111 25 C -0.096 4.096 26 C -0.099 4.099 27 C -0.106 4.106 28 C -0.111 4.111 29 H 0.265 0.735 30 H 0.019 0.981 31 H 0.020 0.980 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.414 0.586 37 H 0.420 0.580 38 H 0.053 0.947 39 H 0.058 0.942 40 H 0.138 0.862 41 H 0.146 0.854 42 H 0.156 0.844 43 H 0.169 0.831 44 H 0.160 0.840 45 H 0.154 0.846 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.466 -22.054 -11.070 34.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.193 4.193 3 Si 0.769 3.231 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.172 1.172 7 C -0.566 4.566 8 H 0.058 0.942 9 C -0.052 4.052 10 C -0.136 4.136 11 C 0.021 3.979 12 N -0.384 5.384 13 C 0.400 3.600 14 O -0.523 6.523 15 N -0.382 5.382 16 C 0.026 3.974 17 C -0.090 4.090 18 C -0.013 4.013 19 N -0.196 5.196 20 N -0.055 5.055 21 N -0.080 5.080 22 N -0.110 5.110 23 C -0.001 4.001 24 C -0.131 4.131 25 C -0.114 4.114 26 C -0.117 4.117 27 C -0.124 4.124 28 C -0.131 4.131 29 H 0.074 0.926 30 H 0.037 0.963 31 H 0.038 0.962 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.251 0.749 37 H 0.258 0.742 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.156 0.844 41 H 0.164 0.836 42 H 0.173 0.827 43 H 0.187 0.813 44 H 0.178 0.822 45 H 0.172 0.828 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 25.247 -21.434 -10.243 34.666 hybrid contribution -0.825 0.587 -0.249 1.043 sum 24.422 -20.847 -10.492 33.780 Atomic orbital electron populations 1.70058 1.08154 1.28038 1.52827 1.25973 0.95586 1.03377 0.94386 0.85725 0.79510 0.78674 0.79163 1.19215 1.21238 1.17217 1.21470 0.91898 0.93242 1.49956 0.94199 1.19481 0.94045 0.94895 0.96769 1.21466 0.91875 0.97928 1.02350 1.21137 0.94054 0.81595 1.01083 1.44973 1.04875 1.09555 1.78956 1.16076 0.82744 0.83557 0.77650 1.90918 1.56333 1.45120 1.59882 1.44576 1.07556 1.05825 1.80240 1.20802 0.80916 0.93661 1.01974 1.20774 0.82304 0.96379 1.09533 1.25951 0.97164 0.95404 0.82782 1.74434 0.99040 1.21739 1.24382 1.78059 1.09000 1.11402 1.07012 1.82640 1.02886 1.20211 1.02310 1.48997 1.06298 1.47531 1.08214 1.17868 1.00560 1.03634 0.78058 1.21383 0.95917 0.99229 0.96603 1.21519 1.00423 0.97467 0.92029 1.21849 0.93097 0.94648 1.02092 1.21435 0.98579 0.99432 0.92967 1.21196 0.99076 0.97321 0.95543 0.92589 0.96280 0.96184 0.91361 0.91640 0.93032 0.92647 0.74926 0.74170 0.92882 0.92339 0.84376 0.83598 0.82652 0.81348 0.82193 0.82796 0.85844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.49 13.96 21.45 0.30 -58.19 16 2 C 0.00 0.20 5.47 84.65 0.46 0.67 16 3 Si 0.95 43.79 27.47 68.60 1.88 45.67 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.25 -10.80 6.54 99.48 0.65 -10.15 16 7 C -0.53 -29.20 9.66 25.60 0.25 -28.95 16 8 H 0.04 2.39 7.99 -2.91 -0.02 2.37 16 9 C -0.01 -0.61 4.04 29.85 0.12 -0.49 16 10 C -0.10 -3.31 5.27 30.60 0.16 -3.15 16 11 C 0.15 4.35 5.67 86.38 0.49 4.84 16 12 N -0.73 -16.38 5.56 -478.53 -2.66 -19.04 16 13 C 0.70 17.27 8.57 179.05 1.53 18.80 16 14 O -0.64 -22.75 16.34 -4.00 -0.07 -22.82 16 15 N -0.72 -9.97 5.56 -478.52 -2.66 -12.64 16 16 C 0.15 2.20 5.66 86.38 0.49 2.68 16 17 C -0.05 -0.36 5.53 29.85 0.17 -0.20 16 18 C 0.26 4.31 7.22 138.05 1.00 5.30 16 19 N -0.34 -7.93 12.15 -50.30 -0.61 -8.55 16 20 N -0.06 -1.58 13.39 37.02 0.50 -1.08 16 21 N -0.10 -2.29 13.84 37.02 0.51 -1.78 16 22 N -0.32 -5.66 3.73 -179.13 -0.67 -6.33 16 23 C 0.09 1.16 6.25 38.07 0.24 1.40 16 24 C -0.11 -0.74 8.65 22.38 0.19 -0.55 16 25 C -0.10 -0.35 10.04 22.25 0.22 -0.13 16 26 C -0.10 -0.44 10.04 22.29 0.22 -0.21 16 27 C -0.11 -0.80 10.04 22.25 0.22 -0.58 16 28 C -0.11 -1.41 9.91 22.38 0.22 -1.19 16 29 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 30 H 0.02 0.84 7.20 -2.39 -0.02 0.82 16 31 H 0.02 0.86 7.57 -2.39 -0.02 0.85 16 32 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.41 6.35 8.49 -92.71 -0.79 5.56 16 37 H 0.42 2.15 8.49 -92.71 -0.79 1.36 16 38 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.14 0.11 5.30 -2.39 -0.01 0.09 16 41 H 0.15 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.16 0.28 6.30 -2.91 -0.02 0.26 16 43 H 0.17 -0.34 8.06 -2.91 -0.02 -0.36 16 44 H 0.16 -0.09 8.06 -2.91 -0.02 -0.11 16 45 H 0.15 0.57 8.06 -2.91 -0.02 0.54 16 46 H 0.12 1.76 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -84.32 393.65 1.92 -82.40 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -0.60 Total: 4.09 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: 5.99 Total: -1.74 kcal Atomic # 7 Polarization: -102.31 SS G_CDS: -5.29 Total: -107.61 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.07 Total: -22.82 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.88 Total: 45.67 kcal Total: -84.32 1.92 -82.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338042096.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.985 kcal (2) G-P(sol) polarization free energy of solvation -84.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds