Wall clock time and date at job start Wed Apr 1 2020 03:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45198 * 109.46961 * 2 1 4 4 C 1.34224 * 116.99709 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00536 * 0.02562 * 4 3 2 6 6 C 1.50707 * 119.99847 * 180.02562 * 4 3 2 7 7 N 1.46505 * 109.46888 * 179.97438 * 6 4 3 8 8 C 1.34773 * 119.99622 * 179.97438 * 7 6 4 9 9 O 1.21284 * 120.00339 * 0.02562 * 8 7 6 10 10 C 1.50708 * 119.99883 * 180.02562 * 8 7 6 11 11 H 1.08993 * 109.50660 * 327.91258 * 10 8 7 12 12 C 1.53102 * 109.50488 * 88.00249 * 10 8 7 13 13 O 1.43008 * 109.25618 * 176.78504 * 12 10 8 14 14 C 1.43015 * 113.74018 * 301.32751 * 13 12 10 15 15 C 1.53100 * 109.26136 * 58.66839 * 14 13 12 16 16 N 1.47016 * 109.29379 * 303.13585 * 15 14 13 17 17 C 1.46900 * 110.99789 * 182.40977 * 16 15 14 18 18 C 1.52995 * 109.47113 * 75.70356 * 17 16 15 19 19 O 1.42895 * 109.47602 * 64.99237 * 18 17 16 20 20 C 1.42906 * 114.00054 * 180.02562 * 19 18 17 21 21 C 1.50700 * 109.46848 * 180.02562 * 20 19 18 22 22 H 1.07992 * 120.00323 * 359.97438 * 21 20 19 23 23 C 1.37888 * 119.99772 * 180.02562 * 21 20 19 24 24 N 1.31512 * 119.99519 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99914 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47022 * 89.99786 * 25 23 21 27 27 H 1.48499 * 109.47062 * 209.99743 * 25 23 21 28 28 H 1.48505 * 109.47049 * 330.00104 * 25 23 21 29 29 H 1.09004 * 109.47032 * 60.00299 * 1 2 3 30 30 H 1.09003 * 109.47151 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47444 * 299.99888 * 1 2 3 32 32 H 1.09001 * 109.47092 * 239.99872 * 2 1 3 33 33 H 1.09002 * 109.46824 * 120.00204 * 2 1 3 34 34 H 1.08993 * 109.47253 * 60.00061 * 6 4 3 35 35 H 1.09002 * 109.47041 * 300.00010 * 6 4 3 36 36 H 0.96998 * 120.00133 * 0.02562 * 7 6 4 37 37 H 1.09000 * 109.50629 * 56.84789 * 12 10 8 38 38 H 1.08999 * 109.53628 * 296.73697 * 12 10 8 39 39 H 1.09007 * 109.50798 * 298.73983 * 14 13 12 40 40 H 1.09000 * 109.54931 * 178.62617 * 14 13 12 41 41 H 1.09004 * 109.50255 * 63.08751 * 15 14 13 42 42 H 1.08996 * 109.51231 * 183.17337 * 15 14 13 43 43 H 1.09007 * 109.46741 * 195.69584 * 17 16 15 44 44 H 1.09000 * 109.47299 * 315.69569 * 17 16 15 45 45 H 1.09000 * 109.47197 * 184.99969 * 18 17 16 46 46 H 1.08999 * 109.46731 * 304.99294 * 18 17 16 47 47 H 1.09003 * 109.46855 * 299.99968 * 20 19 18 48 48 H 1.09001 * 109.47121 * 60.00146 * 20 19 18 49 49 H 0.97001 * 119.99305 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9374 0.0012 7 7 5.3837 2.8607 0.0023 8 6 6.1177 3.9910 0.0025 9 8 5.5671 5.0717 0.0022 10 6 7.6227 3.9122 0.0030 11 1 7.9404 3.0239 0.5490 12 6 8.1311 3.8351 -1.4390 13 8 9.5612 3.8361 -1.4356 14 6 10.1347 4.9897 -0.8145 15 6 9.6465 5.0786 0.6338 16 7 8.1768 5.1115 0.6500 17 6 7.6685 5.2544 2.0208 18 6 7.8558 6.6999 2.4860 19 8 7.0445 7.5656 1.6897 20 6 7.1465 8.9463 2.0437 21 6 6.2537 9.7626 1.1451 22 1 5.6673 9.2758 0.3799 23 6 6.1862 11.1312 1.2992 24 7 6.9007 11.7239 2.2307 25 14 5.0800 12.1431 0.1848 26 1 3.7318 12.2570 0.7969 27 1 5.6604 13.4987 0.0099 28 1 4.9684 11.4779 -1.1382 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.5845 3.4693 0.8911 35 1 3.5850 3.4698 -0.8888 36 1 5.8241 1.9964 0.0021 37 1 7.7678 4.6964 -1.9996 38 1 7.7689 2.9185 -1.9047 39 1 9.8296 5.8846 -1.3569 40 1 11.2216 4.9087 -0.8279 41 1 9.9973 4.2093 1.1901 42 1 10.0360 5.9866 1.0942 43 1 6.6089 4.9998 2.0437 44 1 8.2174 4.5854 2.6835 45 1 7.5612 6.7860 3.5319 46 1 8.9029 6.9831 2.3791 47 1 6.8374 9.0793 3.0805 48 1 8.1790 9.2759 1.9272 49 1 6.8529 12.6867 2.3393 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339078565.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:24 Heat of formation + Delta-G solvation = -193.472170 kcal Electronic energy + Delta-G solvation = -31042.743260 eV Core-core repulsion = 26585.102273 eV Total energy + Delta-G solvation = -4457.640988 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 344.187 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.10861 -40.42322 -38.68996 -37.21887 -36.83796 -35.31626 -34.61417 -32.59642 -32.29866 -31.71997 -29.99474 -28.62685 -27.09060 -25.75530 -24.84693 -23.61793 -22.18540 -21.87233 -21.49587 -21.00948 -20.16160 -18.36849 -17.66486 -17.27283 -16.67811 -16.50364 -16.46289 -16.21585 -15.57015 -15.45061 -15.37543 -15.01958 -14.80161 -14.49664 -14.31954 -14.23925 -14.08509 -13.48555 -13.38502 -13.25099 -13.12369 -13.00907 -12.78686 -12.40398 -12.18951 -12.06181 -11.95291 -11.70780 -11.40209 -11.09987 -11.02308 -11.01768 -10.81173 -10.72771 -10.64435 -10.32884 -10.05108 -9.84263 -9.57658 -9.36915 -8.93970 -8.66248 -8.24236 -7.98556 -5.98993 -3.98342 1.67982 1.93399 2.53577 2.95154 3.38639 3.42842 3.50309 3.64330 3.83329 4.13485 4.45692 4.45847 4.49397 4.60709 4.67315 4.78950 4.86049 4.86395 4.96260 4.98721 5.09255 5.16155 5.18073 5.24347 5.31339 5.37517 5.45622 5.51644 5.56381 5.61755 5.69615 5.74011 5.89850 5.90992 6.02260 6.06580 6.15416 6.30599 6.87841 6.96990 7.04148 7.18977 7.23957 7.31044 7.56869 7.95228 8.14929 8.31552 8.78024 9.18489 9.65935 11.12939 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008094 B = 0.002885 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3458.576768 B = 9703.542555 C =12158.089106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.062 3.938 3 O -0.352 6.352 4 C 0.463 3.537 5 O -0.508 6.508 6 C 0.128 3.872 7 N -0.733 5.733 8 C 0.513 3.487 9 O -0.474 6.474 10 C 0.039 3.961 11 H 0.065 0.935 12 C 0.077 3.923 13 O -0.381 6.381 14 C 0.060 3.940 15 C 0.020 3.980 16 N -0.499 5.499 17 C 0.059 3.941 18 C 0.073 3.927 19 O -0.368 6.368 20 C 0.194 3.806 21 C -0.503 4.503 22 H 0.067 0.933 23 C 0.053 3.947 24 N -0.903 5.903 25 Si 0.906 3.094 26 H -0.280 1.280 27 H -0.287 1.287 28 H -0.271 1.271 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.408 0.592 37 H 0.072 0.928 38 H 0.100 0.900 39 H 0.068 0.932 40 H 0.100 0.900 41 H 0.040 0.960 42 H 0.096 0.904 43 H 0.082 0.918 44 H 0.041 0.959 45 H 0.037 0.963 46 H 0.034 0.966 47 H 0.000 1.000 48 H 0.001 0.999 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.299 -26.035 -4.191 26.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 O -0.268 6.268 4 C 0.306 3.694 5 O -0.396 6.396 6 C 0.003 3.997 7 N -0.393 5.393 8 C 0.297 3.703 9 O -0.343 6.343 10 C -0.073 4.073 11 H 0.083 0.917 12 C 0.000 4.000 13 O -0.299 6.299 14 C -0.017 4.017 15 C -0.108 4.108 16 N -0.226 5.226 17 C -0.069 4.069 18 C -0.006 4.006 19 O -0.287 6.287 20 C 0.119 3.881 21 C -0.542 4.542 22 H 0.086 0.914 23 C -0.147 4.147 24 N -0.543 5.543 25 Si 0.734 3.266 26 H -0.206 1.206 27 H -0.212 1.212 28 H -0.196 1.196 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.245 0.755 37 H 0.090 0.910 38 H 0.118 0.882 39 H 0.087 0.913 40 H 0.118 0.882 41 H 0.058 0.942 42 H 0.114 0.886 43 H 0.100 0.900 44 H 0.059 0.941 45 H 0.055 0.945 46 H 0.052 0.948 47 H 0.017 0.983 48 H 0.019 0.981 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.655 -25.139 -4.622 25.821 hybrid contribution -0.060 -0.361 0.530 0.644 sum -3.716 -25.500 -4.092 26.092 Atomic orbital electron populations 1.21828 0.92265 1.03154 1.03882 1.23108 0.95646 0.79547 1.02809 1.86502 1.23633 1.32997 1.83642 1.23580 0.81180 0.92416 0.72196 1.90665 1.60344 1.42902 1.45665 1.20615 0.81820 0.90369 1.06870 1.45845 1.04819 1.10334 1.78334 1.20319 0.89015 0.83728 0.77253 1.90945 1.72170 1.26959 1.44199 1.22233 0.91761 0.94185 0.99169 0.91747 1.22514 0.81535 1.03304 0.92684 1.87968 1.18889 1.43574 1.79491 1.22756 0.98087 0.88996 0.91814 1.22884 0.87610 1.02196 0.98087 1.61922 1.06225 1.35120 1.19284 1.22257 1.00855 0.96816 0.86937 1.22117 0.94857 0.89778 0.93816 1.88063 1.64672 1.18646 1.57280 1.20158 0.96135 0.76486 0.95319 1.21090 1.24926 0.91071 1.17066 0.91428 1.24947 0.96272 0.97552 0.95952 1.69974 1.41095 1.10058 1.33185 0.86361 0.80331 0.78955 0.80994 1.20589 1.21249 1.19598 0.91248 0.90055 0.91223 0.90978 0.90984 0.86705 0.86706 0.75452 0.90973 0.88235 0.91335 0.88194 0.94159 0.88593 0.89978 0.94144 0.94474 0.94826 0.98265 0.98107 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 10.29 37.16 0.38 -0.32 16 2 C 0.06 0.41 6.19 37.16 0.23 0.64 16 3 O -0.35 -3.07 10.22 -39.24 -0.40 -3.47 16 4 C 0.46 4.35 8.03 36.01 0.29 4.64 16 5 O -0.51 -5.63 15.42 -18.75 -0.29 -5.92 16 6 C 0.13 1.22 6.27 -5.19 -0.03 1.18 16 7 N -0.73 -7.64 5.53 -61.46 -0.34 -7.98 16 8 C 0.51 7.11 5.69 -10.98 -0.06 7.04 16 9 O -0.47 -9.00 15.64 5.55 0.09 -8.91 16 10 C 0.04 0.50 2.38 -68.70 -0.16 0.34 16 11 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 12 C 0.08 0.92 6.27 37.21 0.23 1.15 16 13 O -0.38 -4.77 10.83 -35.23 -0.38 -5.15 16 14 C 0.06 0.72 7.01 37.21 0.26 0.98 16 15 C 0.02 0.26 5.47 -3.71 -0.02 0.24 16 16 N -0.50 -7.76 4.15 -227.65 -0.95 -8.70 16 17 C 0.06 0.94 5.02 -3.83 -0.02 0.92 16 18 C 0.07 1.42 6.13 37.15 0.23 1.65 16 19 O -0.37 -9.47 10.27 -35.23 -0.36 -9.84 16 20 C 0.19 5.58 5.69 36.01 0.20 5.78 16 21 C -0.50 -15.58 9.43 -34.44 -0.32 -15.90 16 22 H 0.07 2.13 7.81 -52.49 -0.41 1.72 16 23 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 24 N -0.90 -27.92 13.29 55.43 0.74 -27.18 16 25 Si 0.91 22.80 29.54 -169.99 -5.02 17.78 16 26 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.45 8.13 -51.93 -0.42 0.03 16 33 H 0.07 0.46 8.13 -51.93 -0.42 0.03 16 34 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.41 3.66 7.44 -40.82 -0.30 3.35 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.04 0.45 8.13 -51.93 -0.42 0.03 16 42 H 0.10 1.27 6.73 -51.93 -0.35 0.92 16 43 H 0.08 1.42 5.96 -51.93 -0.31 1.11 16 44 H 0.04 0.53 7.99 -51.93 -0.41 0.11 16 45 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.03 0.63 6.75 -51.93 -0.35 0.28 16 47 H 0.00 -0.01 8.14 -51.93 -0.42 -0.44 16 48 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 49 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 406.77 15.07 6.13 6.13 Total: -1.00 -37.69 406.77 -7.71 -45.41 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -8.04 Total: -2.00 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: 1.11 Total: 9.84 kcal Atomic # 7 Polarization: -43.32 SS G_CDS: -0.55 Total: -43.87 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -1.35 Total: -33.28 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -37.69 -7.71 -45.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339078565.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.066 kcal (2) G-P(sol) polarization free energy of solvation -37.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds