Wall clock time and date at job start Wed Apr 1 2020 03:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45198 * 109.46961 * 2 1 4 4 C 1.34224 * 116.99709 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00536 * 0.02562 * 4 3 2 6 6 C 1.50707 * 119.99847 * 180.02562 * 4 3 2 7 7 N 1.46505 * 109.46888 * 179.97438 * 6 4 3 8 8 C 1.34773 * 119.99622 * 179.97438 * 7 6 4 9 9 O 1.21284 * 120.00339 * 0.02562 * 8 7 6 10 10 C 1.50708 * 119.99883 * 180.02562 * 8 7 6 11 11 H 1.08993 * 109.50660 * 327.91258 * 10 8 7 12 12 C 1.53102 * 109.50488 * 88.00249 * 10 8 7 13 13 O 1.43008 * 109.25618 * 176.78504 * 12 10 8 14 14 C 1.43015 * 113.74018 * 301.32751 * 13 12 10 15 15 C 1.53100 * 109.26136 * 58.66839 * 14 13 12 16 16 N 1.47016 * 109.29379 * 303.13585 * 15 14 13 17 17 C 1.46900 * 110.99789 * 182.40977 * 16 15 14 18 18 C 1.52995 * 109.47113 * 75.70356 * 17 16 15 19 19 O 1.42895 * 109.47602 * 64.99237 * 18 17 16 20 20 C 1.42906 * 114.00054 * 180.02562 * 19 18 17 21 21 C 1.50700 * 109.46848 * 180.02562 * 20 19 18 22 22 H 1.07992 * 120.00323 * 359.97438 * 21 20 19 23 23 C 1.37888 * 119.99772 * 180.02562 * 21 20 19 24 24 N 1.31512 * 119.99519 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99914 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47022 * 89.99786 * 25 23 21 27 27 H 1.48499 * 109.47062 * 209.99743 * 25 23 21 28 28 H 1.48505 * 109.47049 * 330.00104 * 25 23 21 29 29 H 1.09004 * 109.47032 * 60.00299 * 1 2 3 30 30 H 1.09003 * 109.47151 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47444 * 299.99888 * 1 2 3 32 32 H 1.09001 * 109.47092 * 239.99872 * 2 1 3 33 33 H 1.09002 * 109.46824 * 120.00204 * 2 1 3 34 34 H 1.08993 * 109.47253 * 60.00061 * 6 4 3 35 35 H 1.09002 * 109.47041 * 300.00010 * 6 4 3 36 36 H 0.96998 * 120.00133 * 0.02562 * 7 6 4 37 37 H 1.09000 * 109.50629 * 56.84789 * 12 10 8 38 38 H 1.08999 * 109.53628 * 296.73697 * 12 10 8 39 39 H 1.09007 * 109.50798 * 298.73983 * 14 13 12 40 40 H 1.09000 * 109.54931 * 178.62617 * 14 13 12 41 41 H 1.09004 * 109.50255 * 63.08751 * 15 14 13 42 42 H 1.08996 * 109.51231 * 183.17337 * 15 14 13 43 43 H 1.09007 * 109.46741 * 195.69584 * 17 16 15 44 44 H 1.09000 * 109.47299 * 315.69569 * 17 16 15 45 45 H 1.09000 * 109.47197 * 184.99969 * 18 17 16 46 46 H 1.08999 * 109.46731 * 304.99294 * 18 17 16 47 47 H 1.09003 * 109.46855 * 299.99968 * 20 19 18 48 48 H 1.09001 * 109.47121 * 60.00146 * 20 19 18 49 49 H 0.97001 * 119.99305 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9374 0.0012 7 7 5.3837 2.8607 0.0023 8 6 6.1177 3.9910 0.0025 9 8 5.5671 5.0717 0.0022 10 6 7.6227 3.9122 0.0030 11 1 7.9404 3.0239 0.5490 12 6 8.1311 3.8351 -1.4390 13 8 9.5612 3.8361 -1.4356 14 6 10.1347 4.9897 -0.8145 15 6 9.6465 5.0786 0.6338 16 7 8.1768 5.1115 0.6500 17 6 7.6685 5.2544 2.0208 18 6 7.8558 6.6999 2.4860 19 8 7.0445 7.5656 1.6897 20 6 7.1465 8.9463 2.0437 21 6 6.2537 9.7626 1.1451 22 1 5.6673 9.2758 0.3799 23 6 6.1862 11.1312 1.2992 24 7 6.9007 11.7239 2.2307 25 14 5.0800 12.1431 0.1848 26 1 3.7318 12.2570 0.7969 27 1 5.6604 13.4987 0.0099 28 1 4.9684 11.4779 -1.1382 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.5845 3.4693 0.8911 35 1 3.5850 3.4698 -0.8888 36 1 5.8241 1.9964 0.0021 37 1 7.7678 4.6964 -1.9996 38 1 7.7689 2.9185 -1.9047 39 1 9.8296 5.8846 -1.3569 40 1 11.2216 4.9087 -0.8279 41 1 9.9973 4.2093 1.1901 42 1 10.0360 5.9866 1.0942 43 1 6.6089 4.9998 2.0437 44 1 8.2174 4.5854 2.6835 45 1 7.5612 6.7860 3.5319 46 1 8.9029 6.9831 2.3791 47 1 6.8374 9.0793 3.0805 48 1 8.1790 9.2759 1.9272 49 1 6.8529 12.6867 2.3393 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339078565.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:23 Heat of formation + Delta-G solvation = -223.431721 kcal Electronic energy + Delta-G solvation = -31044.042404 eV Core-core repulsion = 26585.102273 eV Total energy + Delta-G solvation = -4458.940131 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 344.187 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.95559 -41.39585 -39.72561 -38.57479 -37.96090 -36.64878 -35.64525 -34.85958 -32.96541 -32.57186 -31.37983 -29.58338 -29.05738 -27.12685 -25.79452 -24.44952 -24.18041 -22.96659 -22.54464 -21.96893 -21.18401 -19.26857 -18.61193 -18.48739 -18.00143 -17.74760 -17.53166 -17.39399 -17.23525 -16.49914 -16.40663 -16.25570 -16.22215 -15.79853 -15.64390 -15.29299 -15.11567 -14.91417 -14.73221 -14.18514 -14.04923 -13.90872 -13.69761 -13.64432 -13.53210 -13.10544 -12.95295 -12.89343 -12.74762 -12.58134 -12.53857 -12.46445 -12.16185 -11.92167 -11.79438 -11.62446 -11.58905 -11.21273 -11.09226 -10.83609 -10.65630 -10.35268 -10.12265 -9.31062 -8.30340 -6.41084 0.92108 1.18386 1.38102 1.41628 1.45846 1.54223 2.08856 2.36371 2.60631 2.88368 3.02622 3.25042 3.43001 3.68207 3.70860 3.89171 3.91678 3.99130 4.03607 4.15082 4.17172 4.20220 4.29981 4.33214 4.34315 4.35793 4.44565 4.57031 4.61542 4.67768 4.76478 4.80356 4.85071 4.91432 4.92561 4.95134 5.07751 5.14285 5.21487 5.35787 5.57940 5.80419 5.92441 6.01456 6.02612 6.35732 6.48733 6.60713 6.92307 7.13523 7.31109 8.82111 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008094 B = 0.002885 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3458.576768 B = 9703.542555 C =12158.089106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.357 6.357 4 C 0.474 3.526 5 O -0.524 6.524 6 C 0.126 3.874 7 N -0.715 5.715 8 C 0.518 3.482 9 O -0.534 6.534 10 C 0.042 3.958 11 H 0.095 0.905 12 C 0.079 3.921 13 O -0.381 6.381 14 C 0.061 3.939 15 C 0.021 3.979 16 N -0.535 5.535 17 C 0.070 3.930 18 C 0.062 3.938 19 O -0.387 6.387 20 C 0.210 3.790 21 C -0.541 4.541 22 H 0.053 0.947 23 C 0.006 3.994 24 N -0.931 5.931 25 Si 0.981 3.019 26 H -0.267 1.267 27 H -0.270 1.270 28 H -0.269 1.269 29 H 0.068 0.932 30 H 0.102 0.898 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.115 0.885 35 H 0.120 0.880 36 H 0.419 0.581 37 H 0.047 0.953 38 H 0.131 0.869 39 H 0.046 0.954 40 H 0.130 0.870 41 H 0.065 0.935 42 H 0.086 0.914 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.043 0.957 46 H 0.042 0.958 47 H -0.019 1.019 48 H -0.017 1.017 49 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.498 -27.634 -4.738 28.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.018 4.018 3 O -0.273 6.273 4 C 0.317 3.683 5 O -0.414 6.414 6 C 0.001 3.999 7 N -0.374 5.374 8 C 0.304 3.696 9 O -0.408 6.408 10 C -0.070 4.070 11 H 0.113 0.887 12 C 0.002 3.998 13 O -0.299 6.299 14 C -0.016 4.016 15 C -0.106 4.106 16 N -0.261 5.261 17 C -0.057 4.057 18 C -0.016 4.016 19 O -0.306 6.306 20 C 0.135 3.865 21 C -0.578 4.578 22 H 0.071 0.929 23 C -0.192 4.192 24 N -0.570 5.570 25 Si 0.804 3.196 26 H -0.192 1.192 27 H -0.195 1.195 28 H -0.193 1.193 29 H 0.087 0.913 30 H 0.120 0.880 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.132 0.868 35 H 0.138 0.862 36 H 0.258 0.742 37 H 0.066 0.934 38 H 0.149 0.851 39 H 0.064 0.936 40 H 0.147 0.853 41 H 0.083 0.917 42 H 0.104 0.896 43 H 0.085 0.915 44 H 0.097 0.903 45 H 0.062 0.938 46 H 0.060 0.940 47 H -0.002 1.002 48 H 0.000 1.000 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.848 -26.808 -5.158 27.570 hybrid contribution 0.013 0.032 0.738 0.739 sum -3.836 -26.776 -4.420 27.408 Atomic orbital electron populations 1.21855 0.90688 1.04462 1.03710 1.23379 0.96907 0.78436 1.03117 1.86502 1.23030 1.34511 1.83274 1.23378 0.81384 0.91855 0.71662 1.90656 1.60745 1.43314 1.46664 1.20663 0.81224 0.90804 1.07170 1.45668 1.05242 1.09938 1.76588 1.20535 0.89621 0.83406 0.76068 1.90928 1.73240 1.29198 1.47393 1.22295 0.90758 0.94188 0.99760 0.88746 1.22582 0.81390 1.03812 0.92039 1.87971 1.18981 1.43498 1.79492 1.22827 0.99684 0.88108 0.90948 1.22919 0.86094 1.02747 0.98867 1.61773 1.07909 1.37417 1.19044 1.22091 1.00650 0.94573 0.88389 1.22493 0.94433 0.90972 0.93702 1.88029 1.66254 1.17549 1.58750 1.19756 0.94518 0.78369 0.93854 1.21331 1.26250 0.92387 1.17856 0.92903 1.25936 0.97510 0.98406 0.97368 1.70069 1.41840 1.10908 1.34222 0.85221 0.78452 0.77337 0.78620 1.19183 1.19508 1.19319 0.91331 0.87995 0.91452 0.90604 0.90776 0.86758 0.86223 0.74211 0.93446 0.85123 0.93579 0.85252 0.91689 0.89620 0.91529 0.90295 0.93840 0.93989 1.00163 0.99958 0.92091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.29 71.98 0.74 -0.41 16 2 C 0.05 0.65 6.19 71.98 0.45 1.10 16 3 O -0.36 -5.93 10.22 -51.36 -0.52 -6.45 16 4 C 0.47 8.47 8.03 71.24 0.57 9.04 16 5 O -0.52 -10.94 15.42 21.98 0.34 -10.60 16 6 C 0.13 2.34 6.27 85.63 0.54 2.88 16 7 N -0.72 -14.19 5.53 -466.76 -2.58 -16.77 16 8 C 0.52 14.21 5.69 87.66 0.50 14.71 16 9 O -0.53 -20.95 15.64 -3.04 -0.05 -21.00 16 10 C 0.04 1.02 2.38 44.17 0.11 1.12 16 11 H 0.10 1.73 8.14 -2.39 -0.02 1.72 16 12 C 0.08 1.78 6.27 72.02 0.45 2.24 16 13 O -0.38 -8.80 10.83 -148.98 -1.61 -10.41 16 14 C 0.06 1.37 7.01 72.02 0.50 1.88 16 15 C 0.02 0.51 5.47 86.31 0.47 0.98 16 16 N -0.53 -16.28 4.15 -874.14 -3.63 -19.91 16 17 C 0.07 2.21 5.02 86.30 0.43 2.64 16 18 C 0.06 2.45 6.13 71.98 0.44 2.89 16 19 O -0.39 -20.75 10.27 -148.98 -1.53 -22.28 16 20 C 0.21 12.66 5.69 71.24 0.41 13.07 16 21 C -0.54 -34.58 9.43 25.60 0.24 -34.34 16 22 H 0.05 3.45 7.81 -2.91 -0.02 3.43 16 23 C 0.01 0.35 5.46 84.66 0.46 0.82 16 24 N -0.93 -58.11 13.29 21.45 0.28 -57.83 16 25 Si 0.98 46.94 29.54 68.60 2.03 48.97 16 26 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 27 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 28 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 29 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 30 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.08 0.85 8.13 -2.39 -0.02 0.83 16 33 H 0.07 0.85 8.13 -2.39 -0.02 0.83 16 34 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.42 6.69 7.44 -92.71 -0.69 6.00 16 37 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 40 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.07 1.26 8.13 -2.38 -0.02 1.24 16 42 H 0.09 2.22 6.73 -2.39 -0.02 2.21 16 43 H 0.07 2.31 5.96 -2.38 -0.01 2.29 16 44 H 0.08 1.86 7.99 -2.39 -0.02 1.84 16 45 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.04 1.59 6.75 -2.39 -0.02 1.57 16 47 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 48 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 49 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -83.44 406.77 -0.70 -84.15 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 0.26 Total: 13.53 kcal Atomic # 6 Polarization: 12.30 SS G_CDS: 6.31 Total: 18.61 kcal Atomic # 7 Polarization: -88.59 SS G_CDS: -5.93 Total: -94.51 kcal Atomic # 8 Polarization: -67.37 SS G_CDS: -3.38 Total: -70.74 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Total: -83.44 -0.70 -84.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339078565.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.286 kcal (2) G-P(sol) polarization free energy of solvation -83.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds