Wall clock time and date at job start Wed Apr 1 2020 03:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45200 * 109.46787 * 2 1 4 4 C 1.34238 * 116.99912 * 180.02562 * 3 2 1 5 5 O 1.20823 * 119.99781 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99804 * 179.97438 * 4 3 2 7 7 N 1.46504 * 109.46770 * 179.97438 * 6 4 3 8 8 C 1.34771 * 119.99872 * 180.02562 * 7 6 4 9 9 O 1.21288 * 119.99985 * 0.02562 * 8 7 6 10 10 C 1.50698 * 120.00231 * 180.02562 * 8 7 6 11 11 H 1.09003 * 109.50514 * 29.64043 * 10 8 7 12 12 C 1.53100 * 109.50529 * 269.55931 * 10 8 7 13 13 O 1.43017 * 109.26081 * 183.21199 * 12 10 8 14 14 C 1.43015 * 113.73348 * 58.67270 * 13 12 10 15 15 C 1.53102 * 109.25740 * 301.32644 * 14 13 12 16 16 N 1.47011 * 109.51169 * 149.73190 * 10 8 7 17 17 C 1.46902 * 110.99783 * 302.33023 * 16 10 8 18 18 C 1.52997 * 109.46869 * 162.61321 * 17 16 10 19 19 O 1.42905 * 109.47655 * 67.06160 * 18 17 16 20 20 C 1.42893 * 114.00296 * 179.97438 * 19 18 17 21 21 C 1.50700 * 109.47413 * 179.97438 * 20 19 18 22 22 H 1.08005 * 119.99586 * 0.02562 * 21 20 19 23 23 C 1.37868 * 120.00218 * 179.97438 * 21 20 19 24 24 N 1.31515 * 120.00024 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 120.00139 * 0.02562 * 23 21 20 26 26 H 1.48495 * 109.47358 * 89.99649 * 25 23 21 27 27 H 1.48505 * 109.47197 * 209.99750 * 25 23 21 28 28 H 1.48506 * 109.47123 * 329.99705 * 25 23 21 29 29 H 1.09000 * 109.46810 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47338 * 299.99864 * 1 2 3 31 31 H 1.08994 * 109.47483 * 60.00017 * 1 2 3 32 32 H 1.08999 * 109.46887 * 240.00663 * 2 1 3 33 33 H 1.08994 * 109.47483 * 119.99983 * 2 1 3 34 34 H 1.08991 * 109.47399 * 300.00261 * 6 4 3 35 35 H 1.09002 * 109.46800 * 59.99994 * 6 4 3 36 36 H 0.96995 * 120.00042 * 0.02562 * 7 6 4 37 37 H 1.09003 * 109.50612 * 303.14741 * 12 10 8 38 38 H 1.08998 * 109.50668 * 63.27443 * 12 10 8 39 39 H 1.08998 * 109.51293 * 61.26611 * 14 13 12 40 40 H 1.09005 * 109.50301 * 181.39862 * 14 13 12 41 41 H 1.09002 * 109.50549 * 176.78902 * 15 14 13 42 42 H 1.09001 * 109.50647 * 296.87326 * 15 14 13 43 43 H 1.09006 * 109.46363 * 282.60762 * 17 16 10 44 44 H 1.08993 * 109.47578 * 42.60759 * 17 16 10 45 45 H 1.09000 * 109.47200 * 187.05863 * 18 17 16 46 46 H 1.09002 * 109.47143 * 307.05572 * 18 17 16 47 47 H 1.08999 * 109.47420 * 299.99773 * 20 19 18 48 48 H 1.09002 * 109.46997 * 59.99582 * 20 19 18 49 49 H 0.97004 * 120.00199 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9206 2.9375 -0.0012 7 7 5.3836 2.8609 -0.0010 8 6 6.1176 3.9912 -0.0010 9 8 5.5669 5.0719 -0.0006 10 6 7.6225 3.9125 -0.0015 11 1 7.9392 3.0017 -0.5099 12 6 8.1340 3.8965 1.4415 13 8 9.5642 3.8974 1.4350 14 6 10.1361 5.0236 0.7644 15 6 9.6449 5.0510 -0.6854 16 7 8.1752 5.0821 -0.6998 17 6 7.6629 5.1653 -2.0741 18 6 7.8924 6.5762 -2.6194 19 8 9.2948 6.8071 -2.7687 20 6 9.6198 8.1031 -3.2752 21 6 11.1165 8.2364 -3.3910 22 1 11.7555 7.4134 -3.1066 23 6 11.6699 9.4084 -3.8609 24 7 12.9760 9.5249 -3.9615 25 14 10.5646 10.8315 -4.3535 26 1 10.3291 11.7057 -3.1765 27 1 11.2193 11.6170 -5.4304 28 1 9.2668 10.3032 -4.8452 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.5843 3.4694 -0.8911 35 1 3.5849 3.4699 0.8888 36 1 5.8240 1.9967 -0.0010 37 1 7.7719 4.7808 1.9658 38 1 7.7729 3.0002 1.9457 39 1 9.8322 5.9407 1.2690 40 1 11.2230 4.9425 0.7789 41 1 10.0328 5.9391 -1.1844 42 1 9.9952 4.1592 -1.2053 43 1 8.1866 4.4437 -2.7013 44 1 6.5958 4.9432 -2.0782 45 1 7.4028 6.6755 -3.5881 46 1 7.4759 7.3062 -1.9253 47 1 9.1661 8.2336 -4.2577 48 1 9.2391 8.8650 -2.5951 49 1 13.3654 10.3496 -4.2918 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339078566.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:29 Heat of formation + Delta-G solvation = -194.071275 kcal Electronic energy + Delta-G solvation = -30774.705058 eV Core-core repulsion = 26317.038091 eV Total energy + Delta-G solvation = -4457.666967 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 344.187 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.26050 -40.52129 -38.76728 -37.35805 -37.18472 -35.35528 -34.83626 -32.66058 -32.40769 -31.64541 -30.17423 -28.80742 -27.80572 -25.81136 -24.82163 -23.70839 -21.98525 -21.79180 -21.61460 -21.17591 -20.23818 -18.49572 -17.78574 -17.41778 -16.91072 -16.75973 -16.55796 -16.44646 -15.64045 -15.61169 -15.49458 -15.18208 -14.81248 -14.62571 -14.52638 -14.38375 -14.07747 -13.66034 -13.54975 -13.36316 -13.27312 -13.07418 -12.59544 -12.50150 -12.32801 -12.17979 -12.13647 -11.67346 -11.52229 -11.31211 -11.16772 -11.14181 -11.09694 -10.84428 -10.67387 -10.38898 -10.09105 -9.86785 -9.63910 -9.56910 -9.17070 -8.80919 -8.45150 -8.26625 -6.12268 -4.11375 1.53385 1.77684 2.26660 2.78159 3.25900 3.32838 3.34784 3.70410 3.87447 3.99702 4.35056 4.35873 4.38317 4.47218 4.59695 4.68739 4.68852 4.75418 4.85150 4.89194 5.06061 5.07428 5.19883 5.20419 5.24753 5.40266 5.42676 5.48645 5.53702 5.61123 5.73990 5.76315 5.85880 5.93762 5.95028 6.10714 6.25138 6.50429 6.66401 6.89784 7.00294 7.02257 7.07659 7.08076 7.22204 7.60292 7.85744 8.00009 8.64806 8.97373 9.47409 11.00468 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016710 B = 0.002116 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.245813 B =13228.286984 C =14447.805880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.062 3.938 3 O -0.353 6.353 4 C 0.462 3.538 5 O -0.504 6.504 6 C 0.128 3.872 7 N -0.729 5.729 8 C 0.526 3.474 9 O -0.506 6.506 10 C 0.032 3.968 11 H 0.068 0.932 12 C 0.080 3.920 13 O -0.382 6.382 14 C 0.060 3.940 15 C 0.012 3.988 16 N -0.508 5.508 17 C 0.060 3.940 18 C 0.066 3.934 19 O -0.380 6.380 20 C 0.168 3.832 21 C -0.518 4.518 22 H 0.082 0.918 23 C 0.073 3.927 24 N -0.895 5.895 25 Si 0.875 3.125 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.267 1.267 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.412 0.588 37 H 0.067 0.933 38 H 0.097 0.903 39 H 0.063 0.937 40 H 0.104 0.896 41 H 0.137 0.863 42 H 0.040 0.960 43 H 0.043 0.957 44 H 0.079 0.921 45 H 0.043 0.957 46 H 0.053 0.947 47 H 0.002 0.998 48 H 0.000 1.000 49 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.959 -19.159 10.486 31.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 O -0.269 6.269 4 C 0.304 3.696 5 O -0.391 6.391 6 C 0.003 3.997 7 N -0.388 5.388 8 C 0.311 3.689 9 O -0.378 6.378 10 C -0.081 4.081 11 H 0.086 0.914 12 C 0.002 3.998 13 O -0.300 6.300 14 C -0.017 4.017 15 C -0.115 4.115 16 N -0.235 5.235 17 C -0.067 4.067 18 C -0.012 4.012 19 O -0.300 6.300 20 C 0.093 3.907 21 C -0.556 4.556 22 H 0.100 0.900 23 C -0.129 4.129 24 N -0.533 5.533 25 Si 0.702 3.298 26 H -0.199 1.199 27 H -0.209 1.209 28 H -0.191 1.191 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.250 0.750 37 H 0.085 0.915 38 H 0.115 0.885 39 H 0.081 0.919 40 H 0.122 0.878 41 H 0.155 0.845 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.097 0.903 45 H 0.061 0.939 46 H 0.071 0.929 47 H 0.019 0.981 48 H 0.018 0.982 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -22.922 -18.403 10.805 31.318 hybrid contribution -0.483 -0.160 -1.061 1.177 sum -23.405 -18.563 9.744 31.422 Atomic orbital electron populations 1.21828 0.92211 1.03257 1.03805 1.23127 0.95657 0.79401 1.02942 1.86488 1.23546 1.33172 1.83680 1.23522 0.81271 0.92360 0.72442 1.90690 1.60322 1.42813 1.45324 1.20613 0.81772 0.90649 1.06666 1.45882 1.04938 1.10586 1.77440 1.20410 0.89181 0.83420 0.75889 1.90763 1.72773 1.27641 1.46637 1.22305 0.90886 0.95427 0.99436 0.91432 1.22440 0.82266 1.02911 0.92177 1.87988 1.18268 1.46583 1.77180 1.22856 0.98585 0.88726 0.91511 1.23260 0.85622 1.05169 0.97419 1.62067 1.08294 1.36703 1.16422 1.22205 0.99398 0.97492 0.87621 1.22280 0.85315 0.95402 0.98178 1.87795 1.20093 1.36355 1.85737 1.20598 0.97391 0.80463 0.92243 1.20870 0.89052 1.01744 1.43971 0.90005 1.24755 0.94983 0.98096 0.95069 1.69873 1.09874 1.27185 1.46402 0.86859 0.81212 0.82835 0.78895 1.19898 1.20867 1.19130 0.89963 0.91278 0.91252 0.90890 0.90897 0.86798 0.86759 0.75030 0.91468 0.88478 0.91854 0.87831 0.84532 0.94148 0.93840 0.90307 0.93909 0.92906 0.98056 0.98225 0.92386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.50 10.29 37.16 0.38 -0.12 16 2 C 0.06 0.33 6.19 37.16 0.23 0.56 16 3 O -0.35 -2.49 10.22 -39.28 -0.40 -2.89 16 4 C 0.46 3.58 8.03 36.01 0.29 3.87 16 5 O -0.50 -5.01 15.42 -18.75 -0.29 -5.30 16 6 C 0.13 0.92 6.27 -5.19 -0.03 0.89 16 7 N -0.73 -6.33 5.53 -61.47 -0.34 -6.67 16 8 C 0.53 6.13 5.62 -10.99 -0.06 6.07 16 9 O -0.51 -7.55 15.78 5.55 0.09 -7.46 16 10 C 0.03 0.39 2.37 -68.75 -0.16 0.23 16 11 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 12 C 0.08 0.93 6.27 37.21 0.23 1.16 16 13 O -0.38 -5.20 10.83 -35.23 -0.38 -5.58 16 14 C 0.06 0.84 7.01 37.21 0.26 1.10 16 15 C 0.01 0.19 5.30 -3.71 -0.02 0.17 16 16 N -0.51 -7.79 4.22 -227.73 -0.96 -8.75 16 17 C 0.06 0.94 5.21 -3.82 -0.02 0.92 16 18 C 0.07 1.20 6.23 37.16 0.23 1.43 16 19 O -0.38 -8.49 7.36 -35.23 -0.26 -8.74 16 20 C 0.17 4.21 4.76 36.01 0.17 4.39 16 21 C -0.52 -15.07 9.99 -34.44 -0.34 -15.41 16 22 H 0.08 2.57 8.06 -52.48 -0.42 2.15 16 23 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 24 N -0.89 -27.31 13.96 55.43 0.77 -26.54 16 25 Si 0.88 21.44 27.47 -169.99 -4.67 16.77 16 26 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 27 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 28 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 29 H 0.08 0.15 8.14 -51.93 -0.42 -0.28 16 30 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.07 0.38 8.13 -51.93 -0.42 -0.04 16 33 H 0.07 0.37 8.13 -51.93 -0.42 -0.05 16 34 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.41 3.24 7.44 -40.82 -0.30 2.93 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.14 2.65 5.30 -51.93 -0.28 2.37 16 42 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.04 0.67 8.03 -51.93 -0.42 0.25 16 44 H 0.08 1.13 6.03 -51.93 -0.31 0.82 16 45 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.00 0.04 7.20 -51.93 -0.37 -0.33 16 48 H 0.00 0.00 7.57 -51.93 -0.39 -0.39 16 49 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 400.60 15.07 6.04 6.04 Total: -1.00 -34.46 400.60 -7.35 -41.81 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -8.01 Total: 0.05 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: 1.06 Total: 7.28 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: -0.53 Total: -41.97 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -1.24 Total: -29.98 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.46 -7.35 -41.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339078566.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.256 kcal (2) G-P(sol) polarization free energy of solvation -34.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds