Wall clock time and date at job start Wed Apr 1 2020 03:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45200 * 109.46787 * 2 1 4 4 C 1.34238 * 116.99912 * 180.02562 * 3 2 1 5 5 O 1.20823 * 119.99781 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99804 * 179.97438 * 4 3 2 7 7 N 1.46504 * 109.46770 * 179.97438 * 6 4 3 8 8 C 1.34771 * 119.99872 * 180.02562 * 7 6 4 9 9 O 1.21288 * 119.99985 * 0.02562 * 8 7 6 10 10 C 1.50698 * 120.00231 * 180.02562 * 8 7 6 11 11 H 1.09003 * 109.50514 * 29.64043 * 10 8 7 12 12 C 1.53100 * 109.50529 * 269.55931 * 10 8 7 13 13 O 1.43017 * 109.26081 * 183.21199 * 12 10 8 14 14 C 1.43015 * 113.73348 * 58.67270 * 13 12 10 15 15 C 1.53102 * 109.25740 * 301.32644 * 14 13 12 16 16 N 1.47011 * 109.51169 * 149.73190 * 10 8 7 17 17 C 1.46902 * 110.99783 * 302.33023 * 16 10 8 18 18 C 1.52997 * 109.46869 * 162.61321 * 17 16 10 19 19 O 1.42905 * 109.47655 * 67.06160 * 18 17 16 20 20 C 1.42893 * 114.00296 * 179.97438 * 19 18 17 21 21 C 1.50700 * 109.47413 * 179.97438 * 20 19 18 22 22 H 1.08005 * 119.99586 * 0.02562 * 21 20 19 23 23 C 1.37868 * 120.00218 * 179.97438 * 21 20 19 24 24 N 1.31515 * 120.00024 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 120.00139 * 0.02562 * 23 21 20 26 26 H 1.48495 * 109.47358 * 89.99649 * 25 23 21 27 27 H 1.48505 * 109.47197 * 209.99750 * 25 23 21 28 28 H 1.48506 * 109.47123 * 329.99705 * 25 23 21 29 29 H 1.09000 * 109.46810 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47338 * 299.99864 * 1 2 3 31 31 H 1.08994 * 109.47483 * 60.00017 * 1 2 3 32 32 H 1.08999 * 109.46887 * 240.00663 * 2 1 3 33 33 H 1.08994 * 109.47483 * 119.99983 * 2 1 3 34 34 H 1.08991 * 109.47399 * 300.00261 * 6 4 3 35 35 H 1.09002 * 109.46800 * 59.99994 * 6 4 3 36 36 H 0.96995 * 120.00042 * 0.02562 * 7 6 4 37 37 H 1.09003 * 109.50612 * 303.14741 * 12 10 8 38 38 H 1.08998 * 109.50668 * 63.27443 * 12 10 8 39 39 H 1.08998 * 109.51293 * 61.26611 * 14 13 12 40 40 H 1.09005 * 109.50301 * 181.39862 * 14 13 12 41 41 H 1.09002 * 109.50549 * 176.78902 * 15 14 13 42 42 H 1.09001 * 109.50647 * 296.87326 * 15 14 13 43 43 H 1.09006 * 109.46363 * 282.60762 * 17 16 10 44 44 H 1.08993 * 109.47578 * 42.60759 * 17 16 10 45 45 H 1.09000 * 109.47200 * 187.05863 * 18 17 16 46 46 H 1.09002 * 109.47143 * 307.05572 * 18 17 16 47 47 H 1.08999 * 109.47420 * 299.99773 * 20 19 18 48 48 H 1.09002 * 109.46997 * 59.99582 * 20 19 18 49 49 H 0.97004 * 120.00199 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9206 2.9375 -0.0012 7 7 5.3836 2.8609 -0.0010 8 6 6.1176 3.9912 -0.0010 9 8 5.5669 5.0719 -0.0006 10 6 7.6225 3.9125 -0.0015 11 1 7.9392 3.0017 -0.5099 12 6 8.1340 3.8965 1.4415 13 8 9.5642 3.8974 1.4350 14 6 10.1361 5.0236 0.7644 15 6 9.6449 5.0510 -0.6854 16 7 8.1752 5.0821 -0.6998 17 6 7.6629 5.1653 -2.0741 18 6 7.8924 6.5762 -2.6194 19 8 9.2948 6.8071 -2.7687 20 6 9.6198 8.1031 -3.2752 21 6 11.1165 8.2364 -3.3910 22 1 11.7555 7.4134 -3.1066 23 6 11.6699 9.4084 -3.8609 24 7 12.9760 9.5249 -3.9615 25 14 10.5646 10.8315 -4.3535 26 1 10.3291 11.7057 -3.1765 27 1 11.2193 11.6170 -5.4304 28 1 9.2668 10.3032 -4.8452 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.5843 3.4694 -0.8911 35 1 3.5849 3.4699 0.8888 36 1 5.8240 1.9967 -0.0010 37 1 7.7719 4.7808 1.9658 38 1 7.7729 3.0002 1.9457 39 1 9.8322 5.9407 1.2690 40 1 11.2230 4.9425 0.7789 41 1 10.0328 5.9391 -1.1844 42 1 9.9952 4.1592 -1.2053 43 1 8.1866 4.4437 -2.7013 44 1 6.5958 4.9432 -2.0782 45 1 7.4028 6.6755 -3.5881 46 1 7.4759 7.3062 -1.9253 47 1 9.1661 8.2336 -4.2577 48 1 9.2391 8.8650 -2.5951 49 1 13.3654 10.3496 -4.2918 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339078566.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:28 Heat of formation + Delta-G solvation = -220.924123 kcal Electronic energy + Delta-G solvation = -30775.869485 eV Core-core repulsion = 26317.038091 eV Total energy + Delta-G solvation = -4458.831394 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 344.187 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.98047 -41.42099 -39.78494 -38.77756 -37.96743 -36.61216 -35.68657 -34.82092 -32.94001 -32.55145 -31.61499 -29.89090 -29.37152 -27.08951 -25.78320 -24.19925 -23.94714 -22.97957 -22.60157 -21.99110 -21.23972 -19.28836 -19.04096 -18.49335 -18.01330 -17.81927 -17.53072 -17.45048 -17.23142 -16.66994 -16.44623 -16.33099 -16.23411 -15.79561 -15.67395 -15.32886 -15.13350 -14.97328 -14.68617 -14.41908 -14.12111 -14.02079 -13.69382 -13.64674 -13.38243 -13.24858 -12.99521 -12.94509 -12.71178 -12.58193 -12.53651 -12.47906 -12.19109 -11.83333 -11.79575 -11.68994 -11.58823 -11.32626 -11.12482 -10.91041 -10.67916 -10.40502 -10.25477 -9.45541 -8.35673 -6.42453 0.93478 1.17011 1.34239 1.34504 1.35806 1.46516 2.04666 2.29835 2.60315 2.86571 2.97267 3.04565 3.41275 3.62257 3.68972 3.88574 3.92061 3.99230 4.03965 4.14249 4.18555 4.19056 4.29451 4.30907 4.33871 4.36693 4.45622 4.59406 4.59924 4.63397 4.73608 4.76824 4.80755 4.91985 4.95645 5.02011 5.04858 5.12168 5.17896 5.36586 5.47354 5.80512 5.82505 5.94973 6.03585 6.27844 6.48545 6.60396 6.73251 6.99412 7.21662 8.80713 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016710 B = 0.002116 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.245813 B =13228.286984 C =14447.805880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.355 6.355 4 C 0.469 3.531 5 O -0.528 6.528 6 C 0.128 3.872 7 N -0.715 5.715 8 C 0.534 3.466 9 O -0.540 6.540 10 C 0.031 3.969 11 H 0.083 0.917 12 C 0.078 3.922 13 O -0.386 6.386 14 C 0.065 3.935 15 C 0.019 3.981 16 N -0.523 5.523 17 C 0.068 3.932 18 C 0.060 3.940 19 O -0.392 6.392 20 C 0.178 3.822 21 C -0.538 4.538 22 H 0.037 0.963 23 C 0.016 3.984 24 N -0.939 5.939 25 Si 0.949 3.051 26 H -0.262 1.262 27 H -0.274 1.274 28 H -0.249 1.249 29 H 0.099 0.901 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.124 0.876 35 H 0.128 0.872 36 H 0.418 0.582 37 H 0.060 0.940 38 H 0.131 0.869 39 H 0.058 0.942 40 H 0.111 0.889 41 H 0.100 0.900 42 H 0.038 0.962 43 H 0.044 0.956 44 H 0.095 0.905 45 H 0.058 0.942 46 H 0.047 0.953 47 H 0.009 0.991 48 H 0.006 0.994 49 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.724 -19.618 10.731 34.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.018 4.018 3 O -0.271 6.271 4 C 0.313 3.687 5 O -0.417 6.417 6 C 0.003 3.997 7 N -0.373 5.373 8 C 0.320 3.680 9 O -0.416 6.416 10 C -0.081 4.081 11 H 0.101 0.899 12 C 0.000 4.000 13 O -0.304 6.304 14 C -0.011 4.011 15 C -0.109 4.109 16 N -0.250 5.250 17 C -0.059 4.059 18 C -0.017 4.017 19 O -0.312 6.312 20 C 0.103 3.897 21 C -0.576 4.576 22 H 0.055 0.945 23 C -0.182 4.182 24 N -0.579 5.579 25 Si 0.771 3.229 26 H -0.187 1.187 27 H -0.199 1.199 28 H -0.172 1.172 29 H 0.118 0.882 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.141 0.859 35 H 0.145 0.855 36 H 0.257 0.743 37 H 0.078 0.922 38 H 0.149 0.851 39 H 0.076 0.924 40 H 0.129 0.871 41 H 0.118 0.882 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.113 0.887 45 H 0.076 0.924 46 H 0.066 0.934 47 H 0.027 0.973 48 H 0.024 0.976 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -25.722 -18.919 11.062 33.792 hybrid contribution 0.349 -0.177 -1.081 1.150 sum -25.373 -19.096 9.981 33.288 Atomic orbital electron populations 1.21847 0.90596 1.04410 1.03800 1.23355 0.96944 0.78551 1.02981 1.86491 1.23017 1.34304 1.83306 1.23536 0.81386 0.92144 0.71671 1.90684 1.60846 1.43573 1.46641 1.20747 0.80577 0.90572 1.07780 1.45722 1.05687 1.10002 1.75895 1.20165 0.88811 0.83482 0.75590 1.90759 1.73185 1.28949 1.48671 1.22382 0.91484 0.94690 0.99551 0.89895 1.22648 0.81117 1.04261 0.91945 1.87983 1.19557 1.46020 1.76860 1.22755 0.99123 0.88920 0.90343 1.23035 0.86413 1.03180 0.98231 1.61990 1.07697 1.38831 1.16436 1.22127 1.00291 0.95679 0.87825 1.22526 0.83035 0.97006 0.99095 1.87821 1.22923 1.34822 1.85624 1.20303 0.94632 0.82029 0.92764 1.21107 0.91091 1.00936 1.44426 0.94507 1.25739 0.96606 1.01244 0.94651 1.70019 1.12113 1.28445 1.47316 0.85695 0.79528 0.78629 0.79030 1.18707 1.19916 1.17215 0.88247 0.91174 0.91316 0.90997 0.90780 0.85870 0.85450 0.74293 0.92197 0.85135 0.92395 0.87075 0.88223 0.94335 0.93754 0.88664 0.92361 0.93448 0.97309 0.97633 0.91907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 10.29 71.98 0.74 0.03 16 2 C 0.05 0.50 6.19 71.98 0.45 0.95 16 3 O -0.36 -4.43 10.22 -51.49 -0.53 -4.95 16 4 C 0.47 6.45 8.03 71.24 0.57 7.02 16 5 O -0.53 -9.68 15.42 21.97 0.34 -9.34 16 6 C 0.13 1.55 6.27 85.63 0.54 2.09 16 7 N -0.72 -10.78 5.53 -466.79 -2.58 -13.36 16 8 C 0.53 11.42 5.62 87.66 0.49 11.91 16 9 O -0.54 -15.27 15.78 -3.05 -0.05 -15.32 16 10 C 0.03 0.71 2.37 44.18 0.10 0.81 16 11 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 12 C 0.08 1.66 6.27 72.02 0.45 2.11 16 13 O -0.39 -10.05 10.83 -148.98 -1.61 -11.67 16 14 C 0.07 1.86 7.01 72.02 0.50 2.36 16 15 C 0.02 0.61 5.30 86.32 0.46 1.07 16 16 N -0.52 -15.75 4.22 -874.39 -3.69 -19.44 16 17 C 0.07 2.05 5.21 86.30 0.45 2.50 16 18 C 0.06 2.16 6.23 71.98 0.45 2.61 16 19 O -0.39 -17.76 7.36 -148.98 -1.10 -18.86 16 20 C 0.18 8.94 4.76 71.24 0.34 9.28 16 21 C -0.54 -32.23 9.99 25.60 0.26 -31.98 16 22 H 0.04 2.45 8.06 -2.91 -0.02 2.43 16 23 C 0.02 0.93 5.47 84.65 0.46 1.39 16 24 N -0.94 -58.68 13.96 21.44 0.30 -58.38 16 25 Si 0.95 43.76 27.47 68.60 1.88 45.64 16 26 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 27 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 28 H -0.25 -10.67 6.54 99.48 0.65 -10.02 16 29 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 30 H 0.07 0.33 8.14 -2.38 -0.02 0.31 16 31 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.07 0.67 8.13 -2.39 -0.02 0.65 16 33 H 0.07 0.66 8.13 -2.39 -0.02 0.64 16 34 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.42 5.56 7.44 -92.71 -0.69 4.87 16 37 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 40 H 0.11 2.93 8.14 -2.38 -0.02 2.91 16 41 H 0.10 4.06 5.30 -2.39 -0.01 4.05 16 42 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.04 1.32 8.03 -2.38 -0.02 1.30 16 44 H 0.10 2.56 6.03 -2.39 -0.01 2.55 16 45 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.01 0.45 7.20 -2.39 -0.02 0.43 16 48 H 0.01 0.29 7.57 -2.39 -0.02 0.27 16 49 H 0.27 15.66 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -75.56 400.60 -0.57 -76.12 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: 0.21 Total: 17.38 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: 6.26 Total: 12.17 kcal Atomic # 7 Polarization: -85.21 SS G_CDS: -5.97 Total: -91.19 kcal Atomic # 8 Polarization: -57.19 SS G_CDS: -2.95 Total: -60.13 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.88 Total: 45.64 kcal Total: -75.56 -0.57 -76.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339078566.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.800 kcal (2) G-P(sol) polarization free energy of solvation -75.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds