Wall clock time and date at job start Wed Apr 1 2020 03:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46498 * 109.47230 * 2 1 4 4 C 1.36936 * 120.00019 * 293.78605 * 3 2 1 5 5 H 1.08009 * 119.99946 * 149.31440 * 4 3 2 6 6 C 1.38810 * 120.00367 * 329.31463 * 4 3 2 7 7 N 1.31618 * 119.99698 * 337.65120 * 6 4 3 8 8 Si 1.86805 * 120.00140 * 157.64243 * 6 4 3 9 9 H 1.48499 * 109.46816 * 90.00035 * 8 6 4 10 10 H 1.48495 * 109.46925 * 210.00293 * 8 6 4 11 11 H 1.48499 * 109.46889 * 330.00034 * 8 6 4 12 12 S 1.65598 * 119.99653 * 113.78494 * 3 2 1 13 13 O 1.42100 * 106.40681 * 336.46100 * 12 3 2 14 14 O 1.42101 * 106.40044 * 203.54010 * 12 3 2 15 15 C 1.76200 * 107.21517 * 90.00421 * 12 3 2 16 16 C 1.39879 * 126.03769 * 269.68386 * 15 12 3 17 17 C 1.50697 * 125.89392 * 0.02562 * 16 15 12 18 18 N 1.30831 * 108.19898 * 179.82055 * 16 15 12 19 19 N 1.40084 * 108.20997 * 0.44000 * 18 16 15 20 20 C 1.46498 * 126.03707 * 179.73431 * 19 18 16 21 21 C 1.52996 * 109.47480 * 269.97713 * 20 19 18 22 22 N 1.46902 * 109.47100 * 180.02562 * 21 20 19 23 23 C 1.46902 * 110.99823 * 170.00271 * 22 21 20 24 24 C 1.46901 * 111.00052 * 293.95515 * 22 21 20 25 25 C 1.34943 * 107.92473 * 359.72324 * 19 18 16 26 26 C 1.50700 * 126.12818 * 179.97438 * 25 19 18 27 27 H 1.08993 * 109.47119 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47057 * 299.99910 * 1 2 3 29 29 H 1.09007 * 109.46711 * 59.99805 * 1 2 3 30 30 H 1.09008 * 109.46835 * 239.99927 * 2 1 3 31 31 H 1.08995 * 109.46808 * 120.00604 * 2 1 3 32 32 H 0.97006 * 119.99574 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.47538 * 90.00226 * 17 16 15 34 34 H 1.09006 * 109.46651 * 209.99236 * 17 16 15 35 35 H 1.08997 * 109.47432 * 329.98980 * 17 16 15 36 36 H 1.09002 * 109.46918 * 29.98542 * 20 19 18 37 37 H 1.09001 * 109.46867 * 149.97883 * 20 19 18 38 38 H 1.08995 * 109.47344 * 300.00329 * 21 20 19 39 39 H 1.09003 * 109.47120 * 60.00728 * 21 20 19 40 40 H 1.09002 * 109.46989 * 60.00138 * 23 22 21 41 41 H 1.09000 * 109.47004 * 180.02562 * 23 22 21 42 42 H 1.08996 * 109.47307 * 300.00077 * 23 22 21 43 43 H 1.08999 * 109.46856 * 60.00259 * 24 22 21 44 44 H 1.09002 * 109.47231 * 179.97438 * 24 22 21 45 45 H 1.08995 * 109.47397 * 299.99981 * 24 22 21 46 46 H 1.09000 * 109.47174 * 270.01805 * 26 25 19 47 47 H 1.08999 * 109.46965 * 30.02108 * 26 25 19 48 48 H 1.09005 * 109.46730 * 150.01966 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.7957 2.1861 -1.0852 5 1 1.6812 3.2519 -0.9525 6 6 1.7171 1.6325 -2.3556 7 7 2.2708 0.4636 -2.5995 8 14 0.8252 2.5462 -3.7192 9 1 1.7834 3.4279 -4.4331 10 1 0.2465 1.5677 -4.6745 11 1 -0.2633 3.3694 -3.1337 12 16 2.8397 1.9689 1.3124 13 8 2.4459 1.1730 2.4217 14 8 2.6922 3.3818 1.2782 15 6 4.5504 1.6407 1.0468 16 6 5.2392 0.4905 1.4456 17 6 4.6459 -0.6854 2.1779 18 7 6.4865 0.6101 1.0693 19 7 6.6334 1.8463 0.4270 20 6 7.8730 2.3793 -0.1435 21 6 8.6198 3.1846 0.9218 22 7 9.8625 3.7195 0.3495 23 6 10.4872 4.6881 1.2603 24 6 10.7957 2.6363 0.0121 25 6 5.4313 2.4594 0.4263 26 6 5.1247 3.8134 -0.1600 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5139 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 2.2161 0.0769 -3.4874 33 1 4.2783 -1.4149 1.4563 34 1 5.4099 -1.1467 2.8037 35 1 3.8207 -0.3451 2.8034 36 1 8.5007 1.5552 -0.4825 37 1 7.6356 3.0263 -0.9879 38 1 7.9920 4.0087 1.2607 39 1 8.8573 2.5376 1.7662 40 1 10.7201 4.1993 2.2063 41 1 11.4050 5.0687 0.8120 42 1 9.8000 5.5152 1.4382 43 1 10.3327 1.9719 -0.7174 44 1 11.7070 3.0601 -0.4099 45 1 11.0398 2.0733 0.9129 46 1 5.2754 4.5807 0.5993 47 1 5.7878 4.0023 -1.0042 48 1 4.0890 3.8363 -0.4992 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359819063.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:58 Heat of formation + Delta-G solvation = 9.760484 kcal Electronic energy + Delta-G solvation = -30172.229292 eV Core-core repulsion = 26198.446755 eV Total energy + Delta-G solvation = -3973.782536 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.81530 -37.88305 -35.99459 -35.85494 -34.36610 -33.87885 -31.74479 -31.69250 -30.00238 -29.14413 -27.90487 -27.16513 -26.53401 -24.78942 -24.03962 -21.49795 -21.44763 -20.46141 -19.02436 -18.27892 -17.18288 -16.56083 -16.25953 -15.84444 -15.75320 -15.20066 -14.84881 -14.62584 -14.34915 -14.26392 -13.67297 -13.41339 -13.24112 -12.88744 -12.83271 -12.72306 -12.61545 -12.38017 -12.21835 -12.05186 -12.00606 -11.98262 -11.92120 -11.58773 -11.46217 -11.20405 -11.15102 -10.92146 -10.86627 -10.68406 -10.57188 -10.45415 -10.34788 -10.10990 -9.73328 -9.56832 -9.25540 -8.76760 -8.58145 -8.32424 -7.77379 -6.39220 -4.01579 1.92339 2.22410 2.73824 3.00359 3.12174 3.20052 3.27988 3.76439 4.07838 4.54873 4.65808 4.72613 4.83699 4.86031 5.03150 5.05611 5.11471 5.19320 5.23240 5.26291 5.31211 5.49870 5.56806 5.58625 5.59632 5.64203 5.70424 5.91710 5.98967 6.15860 6.21073 6.33776 6.38722 6.46717 6.49791 6.54801 6.62727 6.64666 6.74616 6.78092 7.05227 7.15863 7.31284 7.41962 7.45647 7.70117 8.12417 8.39631 8.84507 9.29270 10.51667 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012983 B = 0.004015 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.148619 B = 6973.007492 C = 7910.449212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.112 3.888 3 N -0.810 5.810 4 C -0.260 4.260 5 H 0.107 0.893 6 C 0.041 3.959 7 N -0.833 5.833 8 Si 0.913 3.087 9 H -0.275 1.275 10 H -0.281 1.281 11 H -0.264 1.264 12 S 2.592 3.408 13 O -1.004 7.004 14 O -0.990 6.990 15 C -0.790 4.790 16 C 0.156 3.844 17 C -0.099 4.099 18 N -0.315 5.315 19 N -0.374 5.374 20 C 0.135 3.865 21 C 0.039 3.961 22 N -0.544 5.544 23 C 0.025 3.975 24 C 0.018 3.982 25 C 0.201 3.799 26 C -0.108 4.108 27 H 0.044 0.956 28 H 0.042 0.958 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.056 0.944 32 H 0.270 0.730 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.110 0.890 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.082 0.918 39 H 0.045 0.955 40 H 0.026 0.974 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.028 0.972 46 H 0.084 0.916 47 H 0.069 0.931 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.384 2.487 1.805 10.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.015 4.015 3 N -0.635 5.635 4 C -0.404 4.404 5 H 0.124 0.876 6 C -0.171 4.171 7 N -0.472 5.472 8 Si 0.739 3.261 9 H -0.201 1.201 10 H -0.206 1.206 11 H -0.189 1.189 12 S 2.690 3.310 13 O -0.994 6.994 14 O -0.980 6.980 15 C -0.881 4.881 16 C -0.013 4.013 17 C -0.158 4.158 18 N -0.136 5.136 19 N -0.154 5.154 20 C 0.012 3.988 21 C -0.090 4.090 22 N -0.268 5.268 23 C -0.123 4.123 24 C -0.131 4.131 25 C 0.071 3.929 26 C -0.166 4.166 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.121 0.879 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.129 0.871 36 H 0.110 0.890 37 H 0.119 0.881 38 H 0.100 0.900 39 H 0.063 0.937 40 H 0.045 0.955 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.047 0.953 46 H 0.103 0.897 47 H 0.087 0.913 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 11.428 2.489 2.108 11.884 hybrid contribution 0.088 -0.027 -0.437 0.446 sum 11.516 2.462 1.672 11.894 Atomic orbital electron populations 1.21891 0.97318 0.99607 1.01654 1.21384 0.93577 0.83519 1.02978 1.53537 1.55958 1.20081 1.33949 1.19585 1.43139 0.92992 0.84720 0.87565 1.25597 0.96694 0.96548 0.98278 1.69930 1.37720 1.17373 1.22160 0.86141 0.80252 0.79448 0.80300 1.20086 1.20636 1.18851 1.08210 0.72463 0.74004 0.76280 1.93278 1.82038 1.70492 1.53579 1.93334 1.86060 1.30932 1.87635 1.32395 1.29255 1.03816 1.22639 1.21744 0.90248 0.94702 0.94604 1.20654 1.01675 0.93526 0.99939 1.77152 1.19374 0.99186 1.17879 1.48752 1.07238 1.13904 1.45527 1.21545 0.83197 0.98319 0.95704 1.22503 0.91589 0.98867 0.96057 1.61911 1.05093 1.15943 1.43882 1.22387 0.99897 0.95732 0.94257 1.22501 0.96412 0.93742 1.00404 1.20836 0.84412 0.94841 0.92832 1.20824 1.05852 0.89726 1.00238 0.93745 0.93881 0.92190 0.87887 0.92600 0.91927 0.90161 0.91416 0.87131 0.88974 0.88112 0.89987 0.93715 0.95531 0.91034 0.91068 0.90966 0.91075 0.95339 0.89716 0.91263 0.86796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.96 37.16 0.37 -2.52 16 2 C 0.11 2.47 5.84 -4.04 -0.02 2.44 16 3 N -0.81 -19.17 2.98 -59.90 -0.18 -19.35 16 4 C -0.26 -6.28 8.60 -15.06 -0.13 -6.41 16 5 H 0.11 2.57 7.35 -52.48 -0.39 2.18 16 6 C 0.04 0.96 4.64 -17.43 -0.08 0.88 16 7 N -0.83 -20.18 11.06 55.49 0.61 -19.57 16 8 Si 0.91 18.43 29.61 -169.99 -5.03 13.39 16 9 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 10 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 11 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 12 S 2.59 60.95 5.58 -107.50 -0.60 60.35 16 13 O -1.00 -24.25 13.99 -57.17 -0.80 -25.05 16 14 O -0.99 -24.48 14.64 -57.17 -0.84 -25.32 16 15 C -0.79 -17.55 6.17 -40.01 -0.25 -17.79 16 16 C 0.16 3.30 7.21 -82.41 -0.59 2.71 16 17 C -0.10 -1.81 10.14 36.00 0.37 -1.45 16 18 N -0.32 -6.47 12.57 33.67 0.42 -6.04 16 19 N -0.37 -6.95 3.61 -57.14 -0.21 -7.16 16 20 C 0.13 1.89 6.17 -4.04 -0.02 1.86 16 21 C 0.04 0.48 5.28 -3.83 -0.02 0.46 16 22 N -0.54 -5.71 5.02 -251.26 -1.26 -6.97 16 23 C 0.03 0.22 9.57 60.07 0.57 0.80 16 24 C 0.02 0.16 9.32 60.07 0.56 0.72 16 25 C 0.20 4.07 6.92 -82.26 -0.57 3.50 16 26 C -0.11 -1.90 9.15 36.01 0.33 -1.57 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.06 1.23 7.42 -51.93 -0.39 0.85 16 30 H 0.10 2.41 5.53 -51.92 -0.29 2.13 16 31 H 0.06 1.17 7.03 -51.93 -0.37 0.80 16 32 H 0.27 6.20 8.31 -40.82 -0.34 5.86 16 33 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.11 2.12 5.66 -51.93 -0.29 1.82 16 36 H 0.09 1.22 6.55 -51.93 -0.34 0.88 16 37 H 0.10 1.29 7.05 -51.93 -0.37 0.92 16 38 H 0.08 1.04 8.06 -51.93 -0.42 0.62 16 39 H 0.04 0.61 8.12 -51.93 -0.42 0.19 16 40 H 0.03 0.23 8.14 -51.93 -0.42 -0.20 16 41 H 0.07 0.52 8.12 -51.93 -0.42 0.09 16 42 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 43 H 0.07 0.65 6.47 -51.93 -0.34 0.32 16 44 H 0.07 0.54 8.12 -51.93 -0.42 0.11 16 45 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 46 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 47 H 0.07 1.00 7.08 -51.93 -0.37 0.63 16 48 H 0.11 2.24 6.71 -51.93 -0.35 1.89 16 LS Contribution 392.06 15.07 5.91 5.91 Total: -1.00 -29.96 392.06 -9.14 -39.10 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -7.67 Total: 7.09 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: 0.51 Total: -16.37 kcal Atomic # 7 Polarization: -58.48 SS G_CDS: -0.61 Total: -59.09 kcal Atomic # 8 Polarization: -48.74 SS G_CDS: -1.64 Total: -50.37 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.39 kcal Atomic # 16 Polarization: 60.95 SS G_CDS: -0.60 Total: 60.35 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -29.96 -9.14 -39.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359819063.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.860 kcal (2) G-P(sol) polarization free energy of solvation -29.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds