Wall clock time and date at job start Wed Apr 1 2020 03:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46498 * 109.47230 * 2 1 4 4 C 1.36936 * 120.00019 * 293.78605 * 3 2 1 5 5 H 1.08009 * 119.99946 * 149.31440 * 4 3 2 6 6 C 1.38810 * 120.00367 * 329.31463 * 4 3 2 7 7 N 1.31618 * 119.99698 * 337.65120 * 6 4 3 8 8 Si 1.86805 * 120.00140 * 157.64243 * 6 4 3 9 9 H 1.48499 * 109.46816 * 90.00035 * 8 6 4 10 10 H 1.48495 * 109.46925 * 210.00293 * 8 6 4 11 11 H 1.48499 * 109.46889 * 330.00034 * 8 6 4 12 12 S 1.65598 * 119.99653 * 113.78494 * 3 2 1 13 13 O 1.42100 * 106.40681 * 336.46100 * 12 3 2 14 14 O 1.42101 * 106.40044 * 203.54010 * 12 3 2 15 15 C 1.76200 * 107.21517 * 90.00421 * 12 3 2 16 16 C 1.39879 * 126.03769 * 269.68386 * 15 12 3 17 17 C 1.50697 * 125.89392 * 0.02562 * 16 15 12 18 18 N 1.30831 * 108.19898 * 179.82055 * 16 15 12 19 19 N 1.40084 * 108.20997 * 0.44000 * 18 16 15 20 20 C 1.46498 * 126.03707 * 179.73431 * 19 18 16 21 21 C 1.52996 * 109.47480 * 269.97713 * 20 19 18 22 22 N 1.46902 * 109.47100 * 180.02562 * 21 20 19 23 23 C 1.46902 * 110.99823 * 170.00271 * 22 21 20 24 24 C 1.46901 * 111.00052 * 293.95515 * 22 21 20 25 25 C 1.34943 * 107.92473 * 359.72324 * 19 18 16 26 26 C 1.50700 * 126.12818 * 179.97438 * 25 19 18 27 27 H 1.08993 * 109.47119 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47057 * 299.99910 * 1 2 3 29 29 H 1.09007 * 109.46711 * 59.99805 * 1 2 3 30 30 H 1.09008 * 109.46835 * 239.99927 * 2 1 3 31 31 H 1.08995 * 109.46808 * 120.00604 * 2 1 3 32 32 H 0.97006 * 119.99574 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.47538 * 90.00226 * 17 16 15 34 34 H 1.09006 * 109.46651 * 209.99236 * 17 16 15 35 35 H 1.08997 * 109.47432 * 329.98980 * 17 16 15 36 36 H 1.09002 * 109.46918 * 29.98542 * 20 19 18 37 37 H 1.09001 * 109.46867 * 149.97883 * 20 19 18 38 38 H 1.08995 * 109.47344 * 300.00329 * 21 20 19 39 39 H 1.09003 * 109.47120 * 60.00728 * 21 20 19 40 40 H 1.09002 * 109.46989 * 60.00138 * 23 22 21 41 41 H 1.09000 * 109.47004 * 180.02562 * 23 22 21 42 42 H 1.08996 * 109.47307 * 300.00077 * 23 22 21 43 43 H 1.08999 * 109.46856 * 60.00259 * 24 22 21 44 44 H 1.09002 * 109.47231 * 179.97438 * 24 22 21 45 45 H 1.08995 * 109.47397 * 299.99981 * 24 22 21 46 46 H 1.09000 * 109.47174 * 270.01805 * 26 25 19 47 47 H 1.08999 * 109.46965 * 30.02108 * 26 25 19 48 48 H 1.09005 * 109.46730 * 150.01966 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.7957 2.1861 -1.0852 5 1 1.6812 3.2519 -0.9525 6 6 1.7171 1.6325 -2.3556 7 7 2.2708 0.4636 -2.5995 8 14 0.8252 2.5462 -3.7192 9 1 1.7834 3.4279 -4.4331 10 1 0.2465 1.5677 -4.6745 11 1 -0.2633 3.3694 -3.1337 12 16 2.8397 1.9689 1.3124 13 8 2.4459 1.1730 2.4217 14 8 2.6922 3.3818 1.2782 15 6 4.5504 1.6407 1.0468 16 6 5.2392 0.4905 1.4456 17 6 4.6459 -0.6854 2.1779 18 7 6.4865 0.6101 1.0693 19 7 6.6334 1.8463 0.4270 20 6 7.8730 2.3793 -0.1435 21 6 8.6198 3.1846 0.9218 22 7 9.8625 3.7195 0.3495 23 6 10.4872 4.6881 1.2603 24 6 10.7957 2.6363 0.0121 25 6 5.4313 2.4594 0.4263 26 6 5.1247 3.8134 -0.1600 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5139 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 2.2161 0.0769 -3.4874 33 1 4.2783 -1.4149 1.4563 34 1 5.4099 -1.1467 2.8037 35 1 3.8207 -0.3451 2.8034 36 1 8.5007 1.5552 -0.4825 37 1 7.6356 3.0263 -0.9879 38 1 7.9920 4.0087 1.2607 39 1 8.8573 2.5376 1.7662 40 1 10.7201 4.1993 2.2063 41 1 11.4050 5.0687 0.8120 42 1 9.8000 5.5152 1.4382 43 1 10.3327 1.9719 -0.7174 44 1 11.7070 3.0601 -0.4099 45 1 11.0398 2.0733 0.9129 46 1 5.2754 4.5807 0.5993 47 1 5.7878 4.0023 -1.0042 48 1 4.0890 3.8363 -0.4992 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359819063.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:56 Heat of formation + Delta-G solvation = -10.475052 kcal Electronic energy + Delta-G solvation = -30173.106770 eV Core-core repulsion = 26198.446755 eV Total energy + Delta-G solvation = -3974.660015 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.33251 -38.76726 -37.79563 -37.69800 -36.26964 -35.23120 -33.48930 -33.18134 -31.29984 -30.85750 -28.63344 -28.46265 -27.98797 -26.58489 -25.13243 -23.18840 -22.47866 -21.97363 -20.49782 -20.06758 -18.86503 -18.29186 -17.88343 -17.11621 -16.78446 -16.52653 -16.41759 -16.05643 -15.79770 -15.45652 -15.19194 -14.80735 -14.67274 -14.49986 -14.24551 -14.05007 -13.91180 -13.74152 -13.62291 -13.50025 -13.28198 -13.06577 -12.98503 -12.89578 -12.70484 -12.65671 -12.62778 -12.53834 -12.50063 -12.38811 -12.16372 -12.07950 -11.98245 -11.84687 -11.46611 -11.27306 -11.02154 -10.10995 -9.94730 -9.57138 -9.53441 -8.16989 -5.86821 0.14512 0.67486 1.36169 1.39005 1.52074 1.57115 1.68814 2.39282 2.86606 2.88937 3.05609 3.37355 3.43499 3.54932 3.67862 3.79267 3.97329 4.05573 4.14010 4.18273 4.37224 4.40151 4.45619 4.51469 4.55221 4.62934 4.64432 4.68249 4.73282 4.79602 4.82614 4.88953 4.93699 4.94515 4.95798 5.09398 5.11303 5.22287 5.37876 5.51442 5.60709 5.72588 5.75354 5.88304 5.93137 6.03450 6.55412 6.58066 7.03738 7.48041 8.74331 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012983 B = 0.004015 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.148619 B = 6973.007492 C = 7910.449212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.108 3.892 3 N -0.819 5.819 4 C -0.281 4.281 5 H 0.099 0.901 6 C 0.015 3.985 7 N -0.857 5.857 8 Si 0.967 3.033 9 H -0.270 1.270 10 H -0.278 1.278 11 H -0.264 1.264 12 S 2.604 3.396 13 O -1.016 7.016 14 O -1.008 7.008 15 C -0.823 4.823 16 C 0.140 3.860 17 C -0.099 4.099 18 N -0.326 5.326 19 N -0.366 5.366 20 C 0.128 3.872 21 C 0.050 3.950 22 N -0.547 5.547 23 C 0.024 3.976 24 C 0.016 3.984 25 C 0.198 3.802 26 C -0.108 4.108 27 H 0.072 0.928 28 H 0.041 0.959 29 H 0.049 0.951 30 H 0.091 0.909 31 H 0.061 0.939 32 H 0.273 0.727 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.117 0.883 38 H 0.079 0.921 39 H 0.029 0.971 40 H 0.025 0.975 41 H 0.089 0.911 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.089 0.911 45 H 0.025 0.975 46 H 0.101 0.899 47 H 0.101 0.899 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.603 3.028 0.959 12.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.018 4.018 3 N -0.645 5.645 4 C -0.425 4.425 5 H 0.116 0.884 6 C -0.195 4.195 7 N -0.495 5.495 8 Si 0.791 3.209 9 H -0.196 1.196 10 H -0.203 1.203 11 H -0.188 1.188 12 S 2.705 3.295 13 O -1.006 7.006 14 O -0.998 6.998 15 C -0.917 4.917 16 C -0.028 4.028 17 C -0.157 4.157 18 N -0.147 5.147 19 N -0.146 5.146 20 C 0.007 3.993 21 C -0.079 4.079 22 N -0.272 5.272 23 C -0.124 4.124 24 C -0.132 4.132 25 C 0.065 3.935 26 C -0.166 4.166 27 H 0.091 0.909 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.108 0.892 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.110 0.890 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.135 0.865 38 H 0.098 0.902 39 H 0.048 0.952 40 H 0.043 0.957 41 H 0.108 0.892 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.108 0.892 45 H 0.043 0.957 46 H 0.120 0.880 47 H 0.119 0.881 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 12.644 3.032 1.257 13.063 hybrid contribution -0.136 -0.185 -0.130 0.264 sum 12.507 2.847 1.127 12.877 Atomic orbital electron populations 1.21853 0.95783 1.01314 1.01053 1.21456 0.94947 0.82878 1.02559 1.53510 1.56774 1.20528 1.33697 1.19640 1.44610 0.92881 0.85365 0.88363 1.26161 0.96689 0.97062 0.99553 1.70006 1.38448 1.18388 1.22697 0.85322 0.79234 0.78472 0.77903 1.19573 1.20273 1.18776 1.07359 0.72843 0.73403 0.75918 1.93258 1.82663 1.70627 1.54083 1.93302 1.86659 1.31932 1.87887 1.32198 1.28917 1.05475 1.25088 1.22150 0.90455 0.95231 0.94969 1.20700 1.01938 0.92983 1.00103 1.77081 1.19047 1.00289 1.18275 1.49032 1.08101 1.13056 1.44410 1.21916 0.81780 0.99085 0.96536 1.22305 0.92490 0.98173 0.94931 1.61949 1.04825 1.16399 1.44024 1.22469 1.00590 0.95282 0.94080 1.22569 0.96836 0.93518 1.00295 1.21192 0.84712 0.95497 0.92067 1.20898 1.05141 0.88821 1.01785 0.90908 0.93963 0.93196 0.89154 0.92067 0.91689 0.89371 0.88997 0.88309 0.88101 0.86475 0.90235 0.95232 0.95655 0.89228 0.90859 0.91091 0.89207 0.95671 0.88024 0.88088 0.89115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.53 9.96 71.98 0.72 -4.82 16 2 C 0.11 4.79 5.84 86.38 0.50 5.29 16 3 N -0.82 -39.31 2.98 -343.44 -1.02 -40.33 16 4 C -0.28 -13.76 8.60 84.03 0.72 -13.03 16 5 H 0.10 4.85 7.35 -2.91 -0.02 4.83 16 6 C 0.02 0.71 4.64 84.86 0.39 1.11 16 7 N -0.86 -41.50 11.06 21.65 0.24 -41.26 16 8 Si 0.97 37.32 29.61 68.60 2.03 39.35 16 9 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 10 H -0.28 -10.49 7.11 99.48 0.71 -9.78 16 11 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 12 S 2.60 124.32 5.58 -56.49 -0.32 124.01 16 13 O -1.02 -49.79 13.99 -128.00 -1.79 -51.58 16 14 O -1.01 -50.68 14.64 -128.00 -1.87 -52.55 16 15 C -0.82 -36.74 6.17 21.99 0.14 -36.61 16 16 C 0.14 5.94 7.21 43.10 0.31 6.25 16 17 C -0.10 -3.58 10.14 71.23 0.72 -2.86 16 18 N -0.33 -13.17 12.57 -47.38 -0.60 -13.76 16 19 N -0.37 -13.24 3.61 -334.71 -1.21 -14.45 16 20 C 0.13 3.34 6.17 86.38 0.53 3.87 16 21 C 0.05 1.17 5.28 86.30 0.46 1.62 16 22 N -0.55 -10.27 5.02 -948.85 -4.76 -15.03 16 23 C 0.02 0.35 9.57 127.69 1.22 1.58 16 24 C 0.02 0.25 9.32 127.69 1.19 1.44 16 25 C 0.20 7.89 6.92 41.41 0.29 8.18 16 26 C -0.11 -3.69 9.15 71.24 0.65 -3.04 16 27 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.05 2.03 7.42 -2.38 -0.02 2.02 16 30 H 0.09 4.28 5.53 -2.38 -0.01 4.27 16 31 H 0.06 2.59 7.03 -2.39 -0.02 2.57 16 32 H 0.27 12.46 8.31 -92.70 -0.77 11.69 16 33 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 34 H 0.09 2.80 8.14 -2.38 -0.02 2.78 16 35 H 0.10 3.81 5.66 -2.39 -0.01 3.79 16 36 H 0.10 2.48 6.55 -2.39 -0.02 2.47 16 37 H 0.12 2.70 7.05 -2.39 -0.02 2.68 16 38 H 0.08 1.88 8.06 -2.39 -0.02 1.86 16 39 H 0.03 0.77 8.12 -2.39 -0.02 0.75 16 40 H 0.02 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.09 1.04 8.12 -2.39 -0.02 1.02 16 42 H 0.07 1.07 8.12 -2.39 -0.02 1.05 16 43 H 0.07 1.14 6.47 -2.39 -0.02 1.12 16 44 H 0.09 1.10 8.12 -2.39 -0.02 1.08 16 45 H 0.02 0.42 8.14 -2.39 -0.02 0.40 16 46 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 47 H 0.10 2.71 7.08 -2.39 -0.02 2.69 16 48 H 0.09 3.58 6.71 -2.38 -0.02 3.56 16 Total: -1.00 -63.70 392.06 -0.50 -64.20 By element: Atomic # 1 Polarization: 31.46 SS G_CDS: 0.95 Total: 32.42 kcal Atomic # 6 Polarization: -38.86 SS G_CDS: 7.85 Total: -31.01 kcal Atomic # 7 Polarization: -117.47 SS G_CDS: -7.35 Total: -124.82 kcal Atomic # 8 Polarization: -100.47 SS G_CDS: -3.67 Total: -104.14 kcal Atomic # 14 Polarization: 37.32 SS G_CDS: 2.03 Total: 39.35 kcal Atomic # 16 Polarization: 124.32 SS G_CDS: -0.32 Total: 124.01 kcal Total: -63.70 -0.50 -64.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359819063.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.722 kcal (2) G-P(sol) polarization free energy of solvation -63.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds