Wall clock time and date at job start Wed Apr 1 2020 03:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99540 * 2 1 3 5 5 N 1.30833 * 125.95772 * 144.71463 * 4 2 1 6 6 C 1.33240 * 109.82343 * 179.86824 * 5 4 2 7 7 C 1.50706 * 125.52456 * 180.12713 * 6 5 4 8 8 H 1.08994 * 109.47074 * 345.29509 * 7 6 5 9 9 C 1.53007 * 109.46923 * 105.29702 * 7 6 5 10 10 N 1.46501 * 109.47235 * 225.29559 * 7 6 5 11 11 S 1.65592 * 120.00022 * 145.00129 * 10 7 6 12 12 O 1.42103 * 104.27707 * 181.07246 * 11 10 7 13 13 O 1.42103 * 104.27614 * 308.92810 * 11 10 7 14 14 C 1.81400 * 104.45222 * 65.00069 * 11 10 7 15 15 C 1.52994 * 109.47370 * 180.02562 * 14 11 10 16 16 C 1.53004 * 109.46976 * 300.00095 * 15 14 11 17 17 C 1.52999 * 109.47039 * 59.99691 * 15 14 11 18 18 C 1.50701 * 109.47302 * 179.97438 * 15 14 11 19 19 H 1.08000 * 119.99498 * 359.97438 * 18 15 14 20 20 C 1.37877 * 120.00027 * 180.02562 * 18 15 14 21 21 N 1.31507 * 120.00308 * 359.97438 * 20 18 15 22 22 Si 1.86801 * 119.99835 * 180.02562 * 20 18 15 23 23 H 1.48502 * 109.46900 * 89.99819 * 22 20 18 24 24 H 1.48497 * 109.47103 * 209.99904 * 22 20 18 25 25 H 1.48501 * 109.46904 * 330.00060 * 22 20 18 26 26 N 1.30710 * 108.94830 * 0.40598 * 6 5 4 27 27 N 1.34426 * 125.96210 * 325.02819 * 4 2 1 28 28 H 0.97003 * 126.82048 * 0.02562 * 27 4 2 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 32 32 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 33 33 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 34 34 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 36 36 H 1.08997 * 109.46636 * 180.02562 * 9 7 6 37 37 H 1.09002 * 109.47104 * 299.99868 * 9 7 6 38 38 H 1.09003 * 109.47178 * 59.99923 * 9 7 6 39 39 H 0.97003 * 119.99424 * 325.00232 * 10 7 6 40 40 H 1.09002 * 109.46701 * 300.00385 * 14 11 10 41 41 H 1.09001 * 109.46738 * 59.99335 * 14 11 10 42 42 H 1.08995 * 109.47027 * 60.00133 * 16 15 14 43 43 H 1.09001 * 109.46747 * 180.02562 * 16 15 14 44 44 H 1.09002 * 109.46608 * 299.99695 * 16 15 14 45 45 H 1.09004 * 109.46770 * 60.00563 * 17 15 14 46 46 H 1.09001 * 109.47018 * 179.97438 * 17 15 14 47 47 H 1.08995 * 109.47650 * 300.00287 * 17 15 14 48 48 H 0.96995 * 120.00800 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 3.1034 -1.4582 1.3025 6 6 3.2467 -1.9243 2.5424 7 6 4.3622 -2.8190 3.0182 8 1 4.8834 -3.2387 2.1578 9 6 5.3447 -2.0044 3.8621 10 7 3.8054 -3.9047 3.8291 11 16 4.4882 -5.4123 3.7754 12 8 3.6849 -6.1922 4.6504 13 8 4.5654 -5.7128 2.3886 14 6 6.1480 -5.1825 4.4703 15 6 6.8890 -6.5210 4.4744 16 6 6.1150 -7.5299 5.3254 17 6 7.0040 -7.0447 3.0414 18 6 8.2681 -6.3300 5.0511 19 1 8.5845 -5.3516 5.3813 20 6 9.1263 -7.4041 5.1562 21 7 8.7411 -8.5953 4.7537 22 14 10.8355 -7.1674 5.8718 23 1 10.7903 -7.3772 7.3412 24 1 11.7683 -8.1477 5.2602 25 1 11.3065 -5.7890 5.5828 26 7 2.2596 -1.4845 3.2779 27 7 1.4549 -0.6909 2.4443 28 1 0.6432 -0.2224 2.6945 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.6767 1.9563 0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9564 -0.8900 36 1 6.1517 -2.6514 4.2058 37 1 5.7590 -1.1966 3.2588 38 1 4.8234 -1.5847 4.7226 39 1 3.0366 -3.7403 4.3974 40 1 6.6995 -4.4641 3.8638 41 1 6.0660 -4.8090 5.4910 42 1 5.1177 -7.6680 4.9078 43 1 6.6432 -8.4833 5.3286 44 1 6.0331 -7.1568 6.3463 45 1 7.5555 -6.3259 2.4351 46 1 7.5324 -7.9981 3.0442 47 1 6.0068 -7.1828 2.6238 48 1 9.3446 -9.3510 4.8280 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451356657.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:51 Heat of formation + Delta-G solvation = -27.251114 kcal Electronic energy + Delta-G solvation = -29100.268065 eV Core-core repulsion = 25124.880586 eV Total energy + Delta-G solvation = -3975.387480 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.35761 -38.28498 -38.11338 -37.77659 -36.92140 -36.32551 -33.61836 -33.56822 -31.59169 -30.45639 -28.37054 -28.08634 -27.65928 -27.20881 -25.46697 -24.42383 -21.61423 -21.35677 -21.26666 -20.34614 -19.13063 -18.55942 -17.83304 -17.52337 -16.98352 -16.74620 -16.57467 -16.33641 -16.10202 -15.19934 -15.11133 -14.98561 -14.62892 -14.53934 -14.40801 -14.00489 -13.83130 -13.59316 -13.41672 -13.11345 -13.08021 -13.04177 -12.87154 -12.83335 -12.68201 -12.54625 -12.48900 -12.41316 -12.21494 -12.15861 -12.11676 -11.92477 -11.89223 -11.52866 -11.40975 -11.21860 -11.18600 -10.80991 -10.57710 -10.47518 -10.38145 -7.99384 -6.17555 -0.67281 0.47217 1.46991 1.48989 1.54981 1.57424 1.60822 1.92708 2.47292 2.72753 2.83530 3.22959 3.30828 3.39219 3.62641 3.90567 3.96732 4.05038 4.08878 4.15172 4.26161 4.36642 4.40421 4.60912 4.71758 4.74802 4.84467 4.89960 4.90234 4.91470 5.00113 5.01897 5.06774 5.11788 5.13720 5.15619 5.27916 5.30894 5.33341 5.42944 5.53792 5.68875 5.94545 6.00529 6.10353 6.14804 6.37238 6.87458 6.97958 7.50565 9.00688 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.022820 B = 0.002569 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.697664 B =10894.562931 C =11362.373613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.018 4.018 3 C -0.140 4.140 4 C 0.296 3.704 5 N -0.563 5.563 6 C 0.219 3.781 7 C 0.235 3.765 8 H 0.111 0.889 9 C -0.170 4.170 10 N -1.108 6.108 11 S 2.609 3.391 12 O -0.990 6.990 13 O -0.989 6.989 14 C -0.581 4.581 15 C 0.071 3.929 16 C -0.162 4.162 17 C -0.162 4.162 18 C -0.512 4.512 19 H 0.068 0.932 20 C 0.016 3.984 21 N -0.909 5.909 22 Si 0.954 3.046 23 H -0.280 1.280 24 H -0.289 1.289 25 H -0.265 1.265 26 N -0.320 5.320 27 N -0.467 5.467 28 H 0.455 0.545 29 H 0.053 0.947 30 H 0.097 0.903 31 H 0.070 0.930 32 H 0.108 0.892 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.423 0.577 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.029 0.971 43 H 0.071 0.929 44 H 0.041 0.959 45 H 0.044 0.956 46 H 0.071 0.929 47 H 0.030 0.970 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.164 22.890 -7.301 28.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.039 4.039 3 C -0.198 4.198 4 C 0.018 3.982 5 N -0.293 5.293 6 C -0.066 4.066 7 C 0.126 3.874 8 H 0.129 0.871 9 C -0.230 4.230 10 N -0.867 5.867 11 S 2.707 3.293 12 O -0.980 6.980 13 O -0.979 6.979 14 C -0.714 4.714 15 C 0.069 3.931 16 C -0.220 4.220 17 C -0.220 4.220 18 C -0.551 4.551 19 H 0.086 0.914 20 C -0.183 4.183 21 N -0.548 5.548 22 Si 0.781 3.219 23 H -0.206 1.206 24 H -0.215 1.215 25 H -0.189 1.189 26 N -0.150 5.150 27 N -0.187 5.187 28 H 0.304 0.696 29 H 0.072 0.928 30 H 0.115 0.885 31 H 0.089 0.911 32 H 0.126 0.874 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.114 0.886 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.258 0.742 40 H 0.163 0.837 41 H 0.163 0.837 42 H 0.048 0.952 43 H 0.090 0.910 44 H 0.061 0.939 45 H 0.063 0.937 46 H 0.089 0.911 47 H 0.049 0.951 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.255 21.619 -7.286 27.444 hybrid contribution 0.474 0.265 0.992 1.130 sum -14.781 21.885 -6.295 27.149 Atomic orbital electron populations 1.21950 0.91328 1.02834 1.04785 1.20072 0.97467 0.96205 0.90136 1.21839 1.01376 0.92522 1.04094 1.25056 0.89071 0.94070 0.90004 1.70345 1.20655 1.17286 1.20983 1.24145 0.96119 0.98176 0.88130 1.19101 0.89006 0.85156 0.94187 0.87117 1.22453 0.98686 1.01164 1.00681 1.55542 1.45707 1.27448 1.58038 1.04953 0.77702 0.72359 0.74272 1.93511 1.68318 1.67822 1.68390 1.93515 1.87774 1.82723 1.33876 1.30549 1.18508 1.08572 1.13821 1.17924 0.94752 0.87230 0.93239 1.22231 0.97191 1.03219 0.99341 1.22227 0.99540 1.03479 0.96715 1.21289 0.97599 0.95313 1.40934 0.91412 1.25681 1.01760 0.95103 0.95756 1.69945 1.36927 1.00229 1.47696 0.85613 0.80006 0.78065 0.78262 1.20562 1.21518 1.18947 1.77834 1.06453 1.13075 1.17618 1.47866 1.24172 1.39355 1.07306 0.69632 0.92813 0.88461 0.91105 0.87351 0.91833 0.93016 0.88635 0.89535 0.89545 0.90481 0.74183 0.83685 0.83702 0.95177 0.91020 0.93939 0.93733 0.91065 0.95092 0.93019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 8.95 71.98 0.64 -0.13 16 2 C -0.02 -0.18 3.39 -11.54 -0.04 -0.22 16 3 C -0.14 -0.97 9.18 71.98 0.66 -0.31 16 4 C 0.30 5.55 6.95 138.23 0.96 6.51 16 5 N -0.56 -14.97 11.19 -179.72 -2.01 -16.98 16 6 C 0.22 6.01 6.98 138.63 0.97 6.98 16 7 C 0.24 6.41 3.35 44.25 0.15 6.56 16 8 H 0.11 3.19 7.48 -2.39 -0.02 3.18 16 9 C -0.17 -3.66 9.46 71.98 0.68 -2.97 16 10 N -1.11 -32.78 5.35 -172.51 -0.92 -33.70 16 11 S 2.61 98.68 4.47 -56.49 -0.25 98.42 16 12 O -0.99 -42.79 15.70 -127.65 -2.00 -44.80 16 13 O -0.99 -42.99 15.01 -127.65 -1.92 -44.91 16 14 C -0.58 -21.64 4.16 71.98 0.30 -21.34 16 15 C 0.07 3.39 0.52 -52.93 -0.03 3.36 16 16 C -0.16 -8.11 7.78 71.98 0.56 -7.55 16 17 C -0.16 -8.06 7.77 71.98 0.56 -7.50 16 18 C -0.51 -26.21 8.01 25.60 0.21 -26.01 16 19 H 0.07 3.28 7.74 -2.91 -0.02 3.26 16 20 C 0.02 0.85 5.15 84.66 0.44 1.29 16 21 N -0.91 -50.43 9.35 21.45 0.20 -50.23 16 22 Si 0.95 41.96 29.54 68.60 2.03 43.98 16 23 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 24 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 25 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 26 N -0.32 -7.93 12.51 -51.33 -0.64 -8.58 16 27 N -0.47 -8.10 7.20 -50.70 -0.37 -8.46 16 28 H 0.45 4.31 8.21 -213.10 -1.75 2.56 16 29 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.07 0.16 7.46 -2.38 -0.02 0.14 16 32 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 36 H 0.09 1.77 5.78 -2.39 -0.01 1.76 16 37 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.42 11.53 8.56 -96.74 -0.83 10.70 16 40 H 0.15 4.65 6.77 -2.39 -0.02 4.64 16 41 H 0.14 4.71 8.14 -2.39 -0.02 4.69 16 42 H 0.03 1.45 5.46 -2.39 -0.01 1.43 16 43 H 0.07 3.91 6.07 -2.39 -0.01 3.90 16 44 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.07 3.88 6.07 -2.39 -0.01 3.86 16 47 H 0.03 1.48 5.46 -2.39 -0.01 1.47 16 48 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 Total: -1.00 -74.40 386.23 -1.42 -75.82 By element: Atomic # 1 Polarization: 32.33 SS G_CDS: -1.58 Total: 30.75 kcal Atomic # 6 Polarization: -47.38 SS G_CDS: 6.05 Total: -41.32 kcal Atomic # 7 Polarization: -114.21 SS G_CDS: -3.74 Total: -117.95 kcal Atomic # 8 Polarization: -85.79 SS G_CDS: -3.92 Total: -89.71 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.98 kcal Atomic # 16 Polarization: 98.68 SS G_CDS: -0.25 Total: 98.42 kcal Total: -74.40 -1.42 -75.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451356657.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.569 kcal (2) G-P(sol) polarization free energy of solvation -74.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds