Wall clock time and date at job start Wed Apr 1 2020 03:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47386 * 2 1 4 4 C 1.46500 * 119.99704 * 274.18819 * 3 2 1 5 5 C 1.50703 * 109.47151 * 274.99620 * 4 3 2 6 6 H 1.08003 * 119.99482 * 0.02562 * 5 4 3 7 7 C 1.37870 * 120.00289 * 180.02562 * 5 4 3 8 8 N 1.31519 * 120.00157 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00206 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46931 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47208 * 119.99897 * 9 7 5 12 12 H 1.48501 * 109.47133 * 239.99903 * 9 7 5 13 13 S 1.65596 * 120.00110 * 94.18413 * 3 2 1 14 14 O 1.42101 * 106.40101 * 159.24391 * 13 3 2 15 15 O 1.42097 * 106.40264 * 26.32777 * 13 3 2 16 16 N 1.65593 * 107.22112 * 272.78682 * 13 3 2 17 17 C 1.46509 * 119.99950 * 294.76396 * 16 13 3 18 18 H 1.08999 * 109.46813 * 4.94802 * 17 16 13 19 19 C 1.52997 * 109.47111 * 244.94524 * 17 16 13 20 20 C 1.50693 * 109.47033 * 124.94525 * 17 16 13 21 21 C 1.39876 * 126.04121 * 39.98015 * 20 17 16 22 22 N 1.30837 * 108.20474 * 179.97438 * 21 20 17 23 23 N 1.40088 * 108.20518 * 0.02562 * 22 21 20 24 24 C 1.46494 * 126.03877 * 180.02562 * 23 22 21 25 25 C 1.53007 * 109.46830 * 265.02019 * 24 23 22 26 26 C 1.53001 * 109.47528 * 145.02043 * 24 23 22 27 27 C 1.34949 * 107.92481 * 0.26132 * 23 22 21 28 28 H 1.08997 * 109.46898 * 64.65944 * 1 2 3 29 29 H 1.09000 * 109.47239 * 184.66442 * 1 2 3 30 30 H 1.09002 * 109.46775 * 304.66162 * 1 2 3 31 31 H 1.09003 * 109.47196 * 239.99772 * 2 1 3 32 32 H 1.09008 * 109.47025 * 120.00093 * 2 1 3 33 33 H 1.08998 * 109.47657 * 35.00039 * 4 3 2 34 34 H 1.09003 * 109.47211 * 155.00519 * 4 3 2 35 35 H 0.97000 * 120.00125 * 179.97438 * 8 7 5 36 36 H 0.96993 * 120.00317 * 114.76581 * 16 13 3 37 37 H 1.09007 * 109.46915 * 55.52450 * 19 17 16 38 38 H 1.09002 * 109.46958 * 175.52005 * 19 17 16 39 39 H 1.08994 * 109.47374 * 295.52623 * 19 17 16 40 40 H 1.07995 * 125.89640 * 359.97438 * 21 20 17 41 41 H 1.09004 * 109.47003 * 25.01836 * 24 23 22 42 42 H 1.08995 * 109.46910 * 299.99768 * 25 24 23 43 43 H 1.09009 * 109.46726 * 179.97438 * 25 24 23 44 44 H 1.08999 * 109.47101 * 60.00187 * 25 24 23 45 45 H 1.09000 * 109.47308 * 179.97438 * 26 24 23 46 46 H 1.09002 * 109.46760 * 300.00013 * 26 24 23 47 47 H 1.09004 * 109.47147 * 59.99882 * 26 24 23 48 48 H 1.08003 * 126.12559 * 179.74147 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1752 2.1026 -1.2654 5 6 3.5199 1.7798 -1.8643 6 1 4.1904 1.1045 -1.3537 7 6 3.8942 2.3466 -3.0641 8 7 3.0775 3.1686 -3.6863 9 14 5.5607 1.9460 -3.8069 10 1 6.2848 1.0023 -2.9180 11 1 5.3709 1.3229 -5.1415 12 1 6.3513 3.1947 -3.9515 13 16 2.3931 2.1269 1.4303 14 8 3.2623 3.2033 1.1059 15 8 2.7416 1.0942 2.3420 16 7 0.9990 2.8093 2.0073 17 6 0.3577 3.9006 1.2696 18 1 0.8874 4.0654 0.3314 19 6 0.3997 5.1782 2.1103 20 6 -1.0757 3.5368 0.9800 21 6 -1.9517 2.8837 1.8533 22 7 -3.1035 2.7445 1.2486 23 7 -2.9967 3.3050 -0.0308 24 6 -4.0587 3.3617 -1.0383 25 6 -3.9244 2.1699 -1.9884 26 6 -3.9388 4.6636 -1.8330 27 6 -1.7411 3.7787 -0.1732 28 1 -0.3633 0.4398 -0.9288 29 1 -0.3634 -1.0242 0.0836 30 1 -0.3633 0.5845 0.8453 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.3879 1.8005 -1.9560 34 1 2.1068 3.1751 -1.0831 35 1 3.3409 3.5677 -4.5302 36 1 0.6070 2.4865 2.8337 37 1 1.4311 5.3974 2.3868 38 1 -0.0053 6.0079 1.5309 39 1 -0.1965 5.0396 3.0121 40 1 -1.7176 2.5517 2.8540 41 1 -5.0300 3.3254 -0.5448 42 1 -2.9532 2.2063 -2.4818 43 1 -4.7149 2.2119 -2.7378 44 1 -4.0099 1.2425 -1.4223 45 1 -4.7287 4.7056 -2.5829 46 1 -4.0344 5.5126 -1.1561 47 1 -2.9676 4.6999 -2.3265 48 1 -1.3402 4.2664 -1.0495 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554534163.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:41 Heat of formation + Delta-G solvation = -8.320733 kcal Electronic energy + Delta-G solvation = -30394.795849 eV Core-core repulsion = 26420.229253 eV Total energy + Delta-G solvation = -3974.566597 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.25722 -36.79261 -36.42311 -35.95077 -35.21999 -35.06291 -32.65121 -30.54880 -30.03286 -29.91952 -28.43013 -27.52569 -26.55169 -23.54314 -23.09821 -22.50399 -21.66589 -20.17871 -20.02869 -18.63626 -17.41135 -17.09655 -16.53609 -16.18760 -15.62540 -15.37323 -15.00079 -14.74821 -14.31450 -14.24651 -13.78989 -13.72072 -13.44875 -13.24701 -12.95661 -12.80377 -12.76688 -12.44346 -12.35428 -12.08775 -11.98349 -11.90940 -11.69938 -11.57507 -11.48730 -11.41848 -11.29086 -11.22903 -11.05948 -10.98443 -10.87402 -10.54077 -10.38975 -10.29261 -9.97396 -9.71685 -9.33262 -9.27503 -8.43786 -8.29926 -8.00383 -6.06464 -4.09103 1.32758 1.98627 2.48642 2.87357 3.31074 3.38987 3.44674 3.64532 4.24208 4.29844 4.45928 4.64353 4.80368 4.84326 4.96335 5.10517 5.19682 5.24657 5.28270 5.36826 5.38238 5.46674 5.47406 5.53480 5.56552 5.64650 5.69696 5.82198 5.82718 5.90996 5.93713 5.95739 6.09038 6.11590 6.33633 6.35546 6.51984 6.67223 6.69592 6.72853 7.09717 7.21781 7.32760 7.47519 7.68909 7.79218 7.92591 8.22843 8.93671 9.56054 11.02040 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.010111 B = 0.004598 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2768.688102 B = 6087.705512 C = 7333.291222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.121 3.879 3 N -0.989 5.989 4 C 0.260 3.740 5 C -0.525 4.525 6 H 0.060 0.940 7 C 0.063 3.937 8 N -0.896 5.896 9 Si 0.895 3.105 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.282 1.282 13 S 2.780 3.220 14 O -0.966 6.966 15 O -1.001 7.001 16 N -1.125 6.125 17 C 0.231 3.769 18 H 0.097 0.903 19 C -0.153 4.153 20 C -0.239 4.239 21 C 0.060 3.940 22 N -0.301 5.301 23 N -0.366 5.366 24 C 0.158 3.842 25 C -0.167 4.167 26 C -0.166 4.166 27 C 0.072 3.928 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.033 0.967 34 H 0.036 0.964 35 H 0.262 0.738 36 H 0.406 0.594 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.175 0.825 41 H 0.098 0.902 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.080 0.920 46 H 0.065 0.935 47 H 0.071 0.929 48 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.781 1.877 6.132 17.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.006 4.006 3 N -0.831 5.831 4 C 0.138 3.862 5 C -0.565 4.565 6 H 0.078 0.922 7 C -0.139 4.139 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.208 1.208 13 S 2.788 3.212 14 O -0.949 6.949 15 O -0.985 6.985 16 N -0.881 5.881 17 C 0.123 3.877 18 H 0.115 0.885 19 C -0.213 4.213 20 C -0.252 4.252 21 C -0.127 4.127 22 N -0.122 5.122 23 N -0.149 5.149 24 C 0.056 3.944 25 C -0.225 4.225 26 C -0.225 4.225 27 C -0.075 4.075 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.071 0.929 36 H 0.238 0.762 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.192 0.808 41 H 0.116 0.884 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.083 0.917 45 H 0.099 0.901 46 H 0.084 0.916 47 H 0.090 0.910 48 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -16.152 1.665 6.183 17.375 hybrid contribution 1.115 -0.062 -0.534 1.237 sum -15.037 1.603 5.650 16.144 Atomic orbital electron populations 1.22197 0.97139 1.00882 1.02170 1.21090 0.92965 0.83251 1.03245 1.57660 1.80972 1.21455 1.23012 1.19002 0.97074 0.91080 0.79039 1.21559 1.01788 1.27572 1.05581 0.92180 1.24899 0.97338 0.94869 0.96821 1.69916 1.36104 1.30685 1.16882 0.86491 0.84103 0.78345 0.78803 1.19661 1.21067 1.20837 1.01977 0.73361 0.73215 0.72668 1.93627 1.62119 1.55195 1.83922 1.93524 1.82498 1.58139 1.64383 1.56310 1.47350 1.48694 1.35792 1.18815 0.88064 0.85699 0.95151 0.88506 1.22137 1.02446 0.96618 1.00067 1.20251 0.98036 1.11771 0.95161 1.23517 0.90485 0.98803 0.99881 1.77291 1.22798 1.20413 0.91665 1.48729 1.09448 1.45149 1.11581 1.21214 0.89598 0.96639 0.86963 1.22255 1.03444 0.97621 0.99144 1.22215 1.03996 0.95784 1.00462 1.22275 0.85585 0.99902 0.99706 0.92533 0.92771 0.92934 0.89980 0.90842 0.94936 0.94575 0.92877 0.76217 0.91638 0.91804 0.92522 0.80785 0.88383 0.91334 0.90703 0.91710 0.90116 0.91581 0.91018 0.80955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 10.24 37.16 0.38 -2.09 16 2 C 0.12 2.14 6.40 -4.04 -0.03 2.11 16 3 N -0.99 -20.13 2.82 -115.66 -0.33 -20.46 16 4 C 0.26 6.26 5.09 -5.19 -0.03 6.23 16 5 C -0.53 -14.46 9.38 -34.44 -0.32 -14.79 16 6 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -25.28 13.29 55.43 0.74 -24.55 16 9 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 S 2.78 54.79 5.96 -107.50 -0.64 54.15 16 14 O -0.97 -22.77 16.65 -57.17 -0.95 -23.72 16 15 O -1.00 -21.08 16.76 -57.17 -0.96 -22.04 16 16 N -1.12 -16.45 5.29 -5.88 -0.03 -16.48 16 17 C 0.23 3.24 3.33 -69.08 -0.23 3.01 16 18 H 0.10 1.57 6.48 -51.93 -0.34 1.24 16 19 C -0.15 -1.86 9.50 37.16 0.35 -1.50 16 20 C -0.24 -3.10 5.09 -105.05 -0.53 -3.64 16 21 C 0.06 0.74 11.49 -17.36 -0.20 0.54 16 22 N -0.30 -4.05 12.58 30.62 0.39 -3.67 16 23 N -0.37 -4.39 3.52 -54.86 -0.19 -4.59 16 24 C 0.16 1.43 3.93 -67.93 -0.27 1.16 16 25 C -0.17 -1.47 9.52 37.16 0.35 -1.12 16 26 C -0.17 -1.21 8.84 37.16 0.33 -0.88 16 27 C 0.07 0.91 10.50 -17.22 -0.18 0.73 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.08 1.49 8.10 -51.93 -0.42 1.07 16 32 H 0.07 1.25 6.96 -51.92 -0.36 0.89 16 33 H 0.03 0.80 8.11 -51.93 -0.42 0.38 16 34 H 0.04 0.91 6.29 -51.93 -0.33 0.59 16 35 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 36 H 0.41 4.84 8.47 -34.46 -0.29 4.55 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.18 1.77 7.84 -52.49 -0.41 1.36 16 41 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.50 8.14 -51.92 -0.42 0.07 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.07 0.56 7.16 -51.93 -0.37 0.19 16 48 H 0.17 1.97 7.27 -52.48 -0.38 1.59 16 LS Contribution 407.02 15.07 6.13 6.13 Total: -1.00 -33.97 407.02 -9.28 -43.25 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -7.94 Total: 3.96 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -0.47 Total: -8.60 kcal Atomic # 7 Polarization: -70.30 SS G_CDS: 0.57 Total: -69.73 kcal Atomic # 8 Polarization: -43.85 SS G_CDS: -1.91 Total: -45.76 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: 54.79 SS G_CDS: -0.64 Total: 54.15 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.97 -9.28 -43.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554534163.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.929 kcal (2) G-P(sol) polarization free energy of solvation -33.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds