Wall clock time and date at job start Wed Apr 1 2020 03:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47386 * 2 1 4 4 C 1.46500 * 119.99704 * 274.18819 * 3 2 1 5 5 C 1.50703 * 109.47151 * 274.99620 * 4 3 2 6 6 H 1.08003 * 119.99482 * 0.02562 * 5 4 3 7 7 C 1.37870 * 120.00289 * 180.02562 * 5 4 3 8 8 N 1.31519 * 120.00157 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00206 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46931 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47208 * 119.99897 * 9 7 5 12 12 H 1.48501 * 109.47133 * 239.99903 * 9 7 5 13 13 S 1.65596 * 120.00110 * 94.18413 * 3 2 1 14 14 O 1.42101 * 106.40101 * 159.24391 * 13 3 2 15 15 O 1.42097 * 106.40264 * 26.32777 * 13 3 2 16 16 N 1.65593 * 107.22112 * 272.78682 * 13 3 2 17 17 C 1.46509 * 119.99950 * 294.76396 * 16 13 3 18 18 H 1.08999 * 109.46813 * 4.94802 * 17 16 13 19 19 C 1.52997 * 109.47111 * 244.94524 * 17 16 13 20 20 C 1.50693 * 109.47033 * 124.94525 * 17 16 13 21 21 C 1.39876 * 126.04121 * 39.98015 * 20 17 16 22 22 N 1.30837 * 108.20474 * 179.97438 * 21 20 17 23 23 N 1.40088 * 108.20518 * 0.02562 * 22 21 20 24 24 C 1.46494 * 126.03877 * 180.02562 * 23 22 21 25 25 C 1.53007 * 109.46830 * 265.02019 * 24 23 22 26 26 C 1.53001 * 109.47528 * 145.02043 * 24 23 22 27 27 C 1.34949 * 107.92481 * 0.26132 * 23 22 21 28 28 H 1.08997 * 109.46898 * 64.65944 * 1 2 3 29 29 H 1.09000 * 109.47239 * 184.66442 * 1 2 3 30 30 H 1.09002 * 109.46775 * 304.66162 * 1 2 3 31 31 H 1.09003 * 109.47196 * 239.99772 * 2 1 3 32 32 H 1.09008 * 109.47025 * 120.00093 * 2 1 3 33 33 H 1.08998 * 109.47657 * 35.00039 * 4 3 2 34 34 H 1.09003 * 109.47211 * 155.00519 * 4 3 2 35 35 H 0.97000 * 120.00125 * 179.97438 * 8 7 5 36 36 H 0.96993 * 120.00317 * 114.76581 * 16 13 3 37 37 H 1.09007 * 109.46915 * 55.52450 * 19 17 16 38 38 H 1.09002 * 109.46958 * 175.52005 * 19 17 16 39 39 H 1.08994 * 109.47374 * 295.52623 * 19 17 16 40 40 H 1.07995 * 125.89640 * 359.97438 * 21 20 17 41 41 H 1.09004 * 109.47003 * 25.01836 * 24 23 22 42 42 H 1.08995 * 109.46910 * 299.99768 * 25 24 23 43 43 H 1.09009 * 109.46726 * 179.97438 * 25 24 23 44 44 H 1.08999 * 109.47101 * 60.00187 * 25 24 23 45 45 H 1.09000 * 109.47308 * 179.97438 * 26 24 23 46 46 H 1.09002 * 109.46760 * 300.00013 * 26 24 23 47 47 H 1.09004 * 109.47147 * 59.99882 * 26 24 23 48 48 H 1.08003 * 126.12559 * 179.74147 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1752 2.1026 -1.2654 5 6 3.5199 1.7798 -1.8643 6 1 4.1904 1.1045 -1.3537 7 6 3.8942 2.3466 -3.0641 8 7 3.0775 3.1686 -3.6863 9 14 5.5607 1.9460 -3.8069 10 1 6.2848 1.0023 -2.9180 11 1 5.3709 1.3229 -5.1415 12 1 6.3513 3.1947 -3.9515 13 16 2.3931 2.1269 1.4303 14 8 3.2623 3.2033 1.1059 15 8 2.7416 1.0942 2.3420 16 7 0.9990 2.8093 2.0073 17 6 0.3577 3.9006 1.2696 18 1 0.8874 4.0654 0.3314 19 6 0.3997 5.1782 2.1103 20 6 -1.0757 3.5368 0.9800 21 6 -1.9517 2.8837 1.8533 22 7 -3.1035 2.7445 1.2486 23 7 -2.9967 3.3050 -0.0308 24 6 -4.0587 3.3617 -1.0383 25 6 -3.9244 2.1699 -1.9884 26 6 -3.9388 4.6636 -1.8330 27 6 -1.7411 3.7787 -0.1732 28 1 -0.3633 0.4398 -0.9288 29 1 -0.3634 -1.0242 0.0836 30 1 -0.3633 0.5845 0.8453 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.3879 1.8005 -1.9560 34 1 2.1068 3.1751 -1.0831 35 1 3.3409 3.5677 -4.5302 36 1 0.6070 2.4865 2.8337 37 1 1.4311 5.3974 2.3868 38 1 -0.0053 6.0079 1.5309 39 1 -0.1965 5.0396 3.0121 40 1 -1.7176 2.5517 2.8540 41 1 -5.0300 3.3254 -0.5448 42 1 -2.9532 2.2063 -2.4818 43 1 -4.7149 2.2119 -2.7378 44 1 -4.0099 1.2425 -1.4223 45 1 -4.7287 4.7056 -2.5829 46 1 -4.0344 5.5126 -1.1561 47 1 -2.9676 4.6999 -2.3265 48 1 -1.3402 4.2664 -1.0495 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000554534163.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:40 Heat of formation + Delta-G solvation = -31.797775 kcal Electronic energy + Delta-G solvation = -30395.813890 eV Core-core repulsion = 26420.229253 eV Total energy + Delta-G solvation = -3975.584638 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.21093 -38.30855 -37.74980 -37.46707 -36.79640 -36.14092 -34.67880 -31.70122 -31.46759 -30.97790 -29.40619 -28.44977 -28.18554 -24.92187 -24.48431 -23.49692 -23.25146 -21.16623 -21.00407 -20.07892 -19.02629 -18.35140 -18.22524 -17.95136 -17.10487 -16.48606 -16.21540 -15.95631 -15.62419 -15.34938 -15.19737 -14.82647 -14.68220 -14.66285 -14.38953 -13.86280 -13.78657 -13.62964 -13.54996 -13.34535 -13.23896 -13.11790 -13.07891 -12.99748 -12.98843 -12.73677 -12.69478 -12.50046 -12.44278 -12.28992 -12.22832 -12.16111 -11.97054 -11.69990 -11.65018 -11.39796 -10.60890 -10.49350 -10.27040 -9.75902 -9.26783 -8.17077 -6.27168 -0.25418 1.01539 1.39090 1.42200 1.53112 1.63758 1.84741 2.16479 2.42873 2.72551 3.14007 3.49024 3.55581 3.90640 3.96287 3.99958 4.03965 4.13712 4.20664 4.28530 4.39070 4.45456 4.48185 4.58197 4.64703 4.67558 4.72967 4.81941 4.85544 4.91880 4.95789 5.00833 5.11070 5.16386 5.20319 5.22768 5.23122 5.35044 5.40338 5.45259 5.57394 5.76294 5.77540 5.95707 6.16757 6.19080 6.28477 6.80595 6.83319 7.40983 8.90143 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.010111 B = 0.004598 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2768.688102 B = 6087.705512 C = 7333.291222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.115 3.885 3 N -0.994 5.994 4 C 0.280 3.720 5 C -0.548 4.548 6 H 0.048 0.952 7 C 0.017 3.983 8 N -0.919 5.919 9 Si 0.950 3.050 10 H -0.273 1.273 11 H -0.271 1.271 12 H -0.279 1.279 13 S 2.794 3.206 14 O -1.008 7.008 15 O -1.015 7.015 16 N -1.104 6.104 17 C 0.232 3.768 18 H 0.070 0.930 19 C -0.150 4.150 20 C -0.247 4.247 21 C 0.060 3.940 22 N -0.321 5.321 23 N -0.364 5.364 24 C 0.151 3.849 25 C -0.161 4.161 26 C -0.161 4.161 27 C 0.066 3.934 28 H 0.043 0.957 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.024 0.976 34 H 0.020 0.980 35 H 0.266 0.734 36 H 0.422 0.578 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.197 0.803 41 H 0.108 0.892 42 H 0.051 0.949 43 H 0.100 0.900 44 H 0.050 0.950 45 H 0.103 0.897 46 H 0.064 0.936 47 H 0.062 0.938 48 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.145 1.669 6.392 18.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 N -0.835 5.835 4 C 0.157 3.843 5 C -0.587 4.587 6 H 0.066 0.934 7 C -0.183 4.183 8 N -0.558 5.558 9 Si 0.776 3.224 10 H -0.198 1.198 11 H -0.196 1.196 12 H -0.205 1.205 13 S 2.803 3.197 14 O -0.991 6.991 15 O -0.999 6.999 16 N -0.866 5.866 17 C 0.124 3.876 18 H 0.088 0.912 19 C -0.209 4.209 20 C -0.260 4.260 21 C -0.126 4.126 22 N -0.142 5.142 23 N -0.147 5.147 24 C 0.050 3.950 25 C -0.219 4.219 26 C -0.219 4.219 27 C -0.081 4.081 28 H 0.063 0.937 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.042 0.958 34 H 0.038 0.962 35 H 0.075 0.925 36 H 0.258 0.742 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.213 0.787 41 H 0.126 0.874 42 H 0.070 0.930 43 H 0.119 0.881 44 H 0.069 0.931 45 H 0.122 0.878 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -17.539 1.429 6.456 18.744 hybrid contribution 1.467 0.003 -0.604 1.587 sum -16.072 1.432 5.852 17.164 Atomic orbital electron populations 1.22073 0.94837 1.02490 1.01721 1.21275 0.94843 0.81742 1.03196 1.57555 1.81493 1.22539 1.21917 1.18531 0.95259 0.90431 0.80129 1.21873 1.03116 1.27631 1.06128 0.93397 1.25629 1.00567 0.94812 0.97274 1.69988 1.37466 1.31127 1.17257 0.85627 0.80197 0.78157 0.78429 1.19787 1.19646 1.20507 1.01293 0.73775 0.72463 0.72205 1.93573 1.64385 1.56613 1.84536 1.93495 1.83294 1.58623 1.64475 1.55783 1.46108 1.48469 1.36249 1.18824 0.88296 0.86125 0.94351 0.91209 1.22113 1.02232 0.95774 1.00769 1.20121 0.97354 1.12790 0.95743 1.23838 0.89913 0.98244 1.00630 1.77254 1.23382 1.21120 0.92419 1.48991 1.09717 1.44354 1.11614 1.21510 0.89222 0.97600 0.86678 1.22215 1.03441 0.96861 0.99357 1.22196 1.04400 0.94648 1.00623 1.22434 0.86058 0.99830 0.99815 0.93747 0.90228 0.92393 0.90912 0.89989 0.95772 0.96171 0.92476 0.74179 0.92804 0.90701 0.90382 0.78669 0.87447 0.93010 0.88133 0.93062 0.87799 0.91680 0.91871 0.80528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.39 10.24 71.98 0.74 -3.65 16 2 C 0.12 4.03 6.40 86.38 0.55 4.58 16 3 N -0.99 -41.00 2.82 -519.83 -1.47 -42.47 16 4 C 0.28 13.85 5.09 85.63 0.44 14.28 16 5 C -0.55 -30.78 9.38 25.60 0.24 -30.54 16 6 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 7 C 0.02 0.95 5.46 84.65 0.46 1.41 16 8 N -0.92 -52.28 13.29 21.45 0.28 -52.00 16 9 Si 0.95 44.40 29.54 68.60 2.03 46.43 16 10 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 12 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 13 S 2.79 110.83 5.96 -56.49 -0.34 110.49 16 14 O -1.01 -48.73 16.65 -128.00 -2.13 -50.86 16 15 O -1.01 -42.25 16.76 -128.00 -2.14 -44.39 16 16 N -1.10 -31.50 5.29 -172.52 -0.91 -32.41 16 17 C 0.23 6.42 3.33 44.24 0.15 6.57 16 18 H 0.07 2.34 6.48 -2.39 -0.02 2.33 16 19 C -0.15 -3.46 9.50 71.98 0.68 -2.78 16 20 C -0.25 -6.17 5.09 -20.14 -0.10 -6.27 16 21 C 0.06 1.38 11.49 85.24 0.98 2.36 16 22 N -0.32 -8.14 12.58 -57.02 -0.72 -8.86 16 23 N -0.36 -8.34 3.52 -327.48 -1.15 -9.50 16 24 C 0.15 2.52 3.93 45.00 0.18 2.69 16 25 C -0.16 -2.66 9.52 71.98 0.69 -1.97 16 26 C -0.16 -2.08 8.84 71.98 0.64 -1.45 16 27 C 0.07 1.63 10.50 83.54 0.88 2.51 16 28 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.07 2.66 8.10 -2.39 -0.02 2.64 16 32 H 0.08 2.73 6.96 -2.38 -0.02 2.71 16 33 H 0.02 1.22 8.11 -2.39 -0.02 1.20 16 34 H 0.02 1.07 6.29 -2.39 -0.02 1.05 16 35 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 36 H 0.42 9.33 8.47 -96.76 -0.82 8.51 16 37 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.20 3.44 7.84 -2.91 -0.02 3.42 16 41 H 0.11 1.62 8.14 -2.38 -0.02 1.60 16 42 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 44 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.06 0.94 7.16 -2.38 -0.02 0.92 16 48 H 0.18 4.08 7.27 -2.91 -0.02 4.06 16 Total: -1.00 -72.79 407.02 0.08 -72.71 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: 0.13 Total: 23.11 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: 6.51 Total: -12.25 kcal Atomic # 7 Polarization: -141.27 SS G_CDS: -3.97 Total: -145.24 kcal Atomic # 8 Polarization: -90.98 SS G_CDS: -4.28 Total: -95.26 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 16 Polarization: 110.83 SS G_CDS: -0.34 Total: 110.49 kcal Total: -72.79 0.08 -72.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554534163.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.913 kcal (2) G-P(sol) polarization free energy of solvation -72.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds