Wall clock time and date at job start Wed Apr 1 2020 03:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.46897 * 2 1 4 4 C 1.46501 * 120.00245 * 274.36865 * 3 2 1 5 5 C 1.50699 * 109.46926 * 275.00420 * 4 3 2 6 6 H 1.08000 * 120.00463 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99774 * 180.02562 * 5 4 3 8 8 N 1.31507 * 119.99920 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 120.00012 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47289 * 89.99991 * 9 7 5 11 11 H 1.48496 * 109.47270 * 210.00316 * 9 7 5 12 12 H 1.48499 * 109.47009 * 330.00171 * 9 7 5 13 13 S 1.65598 * 119.99819 * 94.37121 * 3 2 1 14 14 O 1.42103 * 106.40223 * 329.71853 * 13 3 2 15 15 O 1.42098 * 106.40227 * 196.79858 * 13 3 2 16 16 N 1.65603 * 107.21834 * 83.25725 * 13 3 2 17 17 C 1.46499 * 119.99845 * 66.84137 * 16 13 3 18 18 H 1.08997 * 109.47177 * 339.50619 * 17 16 13 19 19 C 1.52998 * 109.47389 * 99.51238 * 17 16 13 20 20 C 1.50707 * 109.46749 * 219.50604 * 17 16 13 21 21 C 1.39861 * 126.04178 * 319.69485 * 20 17 16 22 22 N 1.30840 * 108.20174 * 179.81801 * 21 20 17 23 23 N 1.40079 * 108.20586 * 0.43341 * 22 21 20 24 24 C 1.46503 * 126.03965 * 179.73822 * 23 22 21 25 25 C 1.53003 * 109.47030 * 94.97781 * 24 23 22 26 26 C 1.52997 * 109.47173 * 214.98070 * 24 23 22 27 27 C 1.34944 * 107.92527 * 359.72187 * 23 22 21 28 28 H 1.08997 * 109.47204 * 305.04045 * 1 2 3 29 29 H 1.09000 * 109.47481 * 65.04207 * 1 2 3 30 30 H 1.09001 * 109.47472 * 185.03851 * 1 2 3 31 31 H 1.09001 * 109.46819 * 240.00163 * 2 1 3 32 32 H 1.08994 * 109.47088 * 120.00406 * 2 1 3 33 33 H 1.09001 * 109.47182 * 35.00230 * 4 3 2 34 34 H 1.08993 * 109.47371 * 155.00170 * 4 3 2 35 35 H 0.97010 * 119.99858 * 179.97438 * 8 7 5 36 36 H 0.97000 * 120.00030 * 246.84305 * 16 13 3 37 37 H 1.09006 * 109.46600 * 299.99694 * 19 17 16 38 38 H 1.08997 * 109.47466 * 59.99558 * 19 17 16 39 39 H 1.08997 * 109.47167 * 179.97438 * 19 17 16 40 40 H 1.08003 * 125.90379 * 359.97438 * 21 20 17 41 41 H 1.09002 * 109.46762 * 334.98278 * 24 23 22 42 42 H 1.09000 * 109.47013 * 59.99651 * 25 24 23 43 43 H 1.08995 * 109.47513 * 180.02562 * 25 24 23 44 44 H 1.09001 * 109.46837 * 300.00631 * 25 24 23 45 45 H 1.09004 * 109.46690 * 180.02562 * 26 24 23 46 46 H 1.09001 * 109.46988 * 299.99517 * 26 24 23 47 47 H 1.08994 * 109.47566 * 59.99949 * 26 24 23 48 48 H 1.07999 * 126.12988 * 179.97438 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1713 2.1041 -1.2650 5 6 3.5141 1.7820 -1.8683 6 1 4.1865 1.1067 -1.3602 7 6 3.8848 2.3502 -3.0687 8 7 5.0568 2.0695 -3.5950 9 14 2.7221 3.5188 -3.9474 10 1 2.9810 4.9089 -3.4937 11 1 2.9425 3.4273 -5.4130 12 1 1.3184 3.1492 -3.6339 13 16 2.3973 2.1254 1.4300 14 8 1.5454 1.5580 2.4157 15 8 2.4485 3.5188 1.1559 16 7 3.9393 1.6696 1.8261 17 6 5.0672 2.1058 0.9993 18 1 4.7050 2.3906 0.0115 19 6 5.7484 3.3068 1.6585 20 6 6.0576 0.9778 0.8654 21 6 6.4427 0.0960 1.8803 22 7 7.3134 -0.7445 1.3829 23 7 7.5176 -0.4173 0.0363 24 6 8.4204 -1.1047 -0.8905 25 6 7.6368 -2.1540 -1.6816 26 6 9.0302 -0.0875 -1.8571 27 6 6.7356 0.6427 -0.2568 28 1 -0.3633 0.5900 0.8414 29 1 -0.3634 0.4336 -0.9317 30 1 -0.3634 -1.0237 0.0903 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.3819 1.8027 -1.9536 34 1 2.1033 3.1763 -1.0813 35 1 5.3174 2.4690 -4.4397 36 1 4.0956 1.1139 2.6056 37 1 5.0321 4.1227 1.7554 38 1 6.1107 3.0221 2.6463 39 1 6.5879 3.6310 1.0435 40 1 6.0817 0.1053 2.8982 41 1 9.2157 -1.5932 -0.3276 42 1 6.8414 -1.6654 -2.2444 43 1 8.3085 -2.6657 -2.3708 44 1 7.2023 -2.8785 -0.9929 45 1 9.7016 -0.5991 -2.5468 46 1 8.2348 0.4010 -2.4199 47 1 9.5884 0.6600 -1.2935 48 1 6.6641 1.1357 -1.2150 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554534164.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:46 Heat of formation + Delta-G solvation = -7.244752 kcal Electronic energy + Delta-G solvation = -30688.068317 eV Core-core repulsion = 26713.548379 eV Total energy + Delta-G solvation = -3974.519939 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.89207 -36.74456 -36.30061 -36.04978 -35.19694 -34.89738 -32.70656 -30.25170 -30.19768 -29.70748 -28.08491 -27.19281 -27.12890 -23.21152 -22.89833 -22.22303 -21.54251 -19.85422 -19.66321 -18.55284 -17.32426 -16.99677 -16.84159 -16.36844 -15.53301 -15.05097 -14.78585 -14.46088 -14.26867 -13.92123 -13.82365 -13.47118 -13.34748 -13.07885 -12.72344 -12.59413 -12.48564 -12.37230 -12.15010 -12.03967 -11.95744 -11.94243 -11.81787 -11.47789 -11.34634 -11.26901 -11.19979 -11.13670 -11.06200 -11.00474 -10.78368 -10.48961 -10.42905 -10.15615 -9.99981 -9.56206 -9.06417 -8.96462 -8.70012 -8.12507 -7.89157 -6.25649 -4.22540 1.31867 2.36946 2.83572 3.19376 3.23579 3.30043 3.34986 3.61937 4.19493 4.30826 4.63355 4.97595 5.04927 5.08597 5.12105 5.23902 5.36817 5.42888 5.56055 5.57715 5.64283 5.71727 5.77046 5.81357 5.83006 5.92038 5.94030 6.02579 6.09811 6.14496 6.24655 6.26525 6.30052 6.34371 6.45941 6.53658 6.63316 6.69180 6.85443 6.94090 7.10528 7.14820 7.34413 7.48622 7.51412 7.63010 8.13644 8.35215 8.79454 9.38505 10.86010 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.009019 B = 0.005702 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3103.640117 B = 4909.620188 C = 6352.624024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.133 3.867 3 N -0.987 5.987 4 C 0.210 3.790 5 C -0.543 4.543 6 H 0.091 0.909 7 C 0.081 3.919 8 N -0.893 5.893 9 Si 0.867 3.133 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.265 1.265 13 S 2.786 3.214 14 O -1.001 7.001 15 O -0.980 6.980 16 N -1.118 6.118 17 C 0.217 3.783 18 H 0.130 0.870 19 C -0.157 4.157 20 C -0.240 4.240 21 C 0.051 3.949 22 N -0.313 5.313 23 N -0.369 5.369 24 C 0.161 3.839 25 C -0.166 4.166 26 C -0.168 4.168 27 C 0.091 3.909 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.035 0.965 34 H 0.044 0.956 35 H 0.265 0.735 36 H 0.403 0.597 37 H 0.063 0.937 38 H 0.049 0.951 39 H 0.062 0.938 40 H 0.172 0.828 41 H 0.093 0.907 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.060 0.940 45 H 0.076 0.924 46 H 0.081 0.919 47 H 0.062 0.938 48 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.221 -4.997 4.674 8.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.007 3.993 3 N -0.828 5.828 4 C 0.086 3.914 5 C -0.582 4.582 6 H 0.109 0.891 7 C -0.122 4.122 8 N -0.531 5.531 9 Si 0.694 3.306 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.190 1.190 13 S 2.794 3.206 14 O -0.985 6.985 15 O -0.964 6.964 16 N -0.876 5.876 17 C 0.109 3.891 18 H 0.147 0.853 19 C -0.217 4.217 20 C -0.253 4.253 21 C -0.136 4.136 22 N -0.134 5.134 23 N -0.152 5.152 24 C 0.059 3.941 25 C -0.224 4.224 26 C -0.226 4.226 27 C -0.055 4.055 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.235 0.765 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.189 0.811 41 H 0.111 0.889 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.079 0.921 45 H 0.095 0.905 46 H 0.100 0.900 47 H 0.081 0.919 48 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 4.586 -5.327 4.973 8.611 hybrid contribution -0.690 0.675 -0.713 1.200 sum 3.896 -4.652 4.261 7.414 Atomic orbital electron populations 1.22230 0.97007 1.01473 1.02288 1.20945 0.93369 0.82617 1.02390 1.57511 1.79123 1.22983 1.23144 1.19612 0.98198 0.92368 0.81184 1.21570 1.00850 1.29198 1.06543 0.89121 1.24769 0.94935 0.95800 0.96717 1.69805 1.19988 1.43932 1.19388 0.86983 0.82290 0.82332 0.79026 1.19739 1.21253 1.18961 1.01737 0.72661 0.73718 0.72517 1.93550 1.65012 1.80083 1.59862 1.93567 1.86727 1.30972 1.85106 1.56016 1.24403 1.68268 1.38870 1.19283 0.83896 0.89799 0.96088 0.85252 1.22217 1.00896 0.98129 1.00417 1.20061 1.07246 1.04422 0.93530 1.23497 0.96375 0.94097 0.99601 1.77198 1.21596 1.24079 0.90512 1.48708 1.33986 1.24541 1.07952 1.21145 0.90760 0.93320 0.88866 1.22240 1.01289 0.98558 1.00278 1.22221 1.02166 0.99077 0.99136 1.22682 0.92210 0.89947 1.00683 0.92345 0.92427 0.92328 0.90092 0.91915 0.94660 0.93811 0.92530 0.76475 0.91753 0.93174 0.91935 0.81124 0.88890 0.90880 0.91020 0.92134 0.90521 0.90017 0.91902 0.79400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.59 10.24 37.16 0.38 -2.21 16 2 C 0.13 2.25 6.05 -4.04 -0.02 2.22 16 3 N -0.99 -19.16 2.82 -115.67 -0.33 -19.49 16 4 C 0.21 4.62 4.47 -5.19 -0.02 4.60 16 5 C -0.54 -12.93 7.97 -34.44 -0.27 -13.20 16 6 H 0.09 2.23 6.75 -52.49 -0.35 1.88 16 7 C 0.08 2.02 5.47 -17.82 -0.10 1.92 16 8 N -0.89 -22.69 13.96 55.43 0.77 -21.91 16 9 Si 0.87 19.59 27.47 -169.99 -4.67 14.93 16 10 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.26 -5.83 6.54 56.52 0.37 -5.46 16 13 S 2.79 53.50 5.97 -107.50 -0.64 52.86 16 14 O -1.00 -20.02 17.11 -57.17 -0.98 -20.99 16 15 O -0.98 -21.56 16.30 -57.17 -0.93 -22.49 16 16 N -1.12 -18.43 5.47 -5.88 -0.03 -18.46 16 17 C 0.22 3.78 3.02 -69.08 -0.21 3.58 16 18 H 0.13 2.66 4.89 -51.93 -0.25 2.41 16 19 C -0.16 -2.49 9.50 37.16 0.35 -2.14 16 20 C -0.24 -4.05 5.09 -105.05 -0.53 -4.59 16 21 C 0.05 0.79 11.33 -17.37 -0.20 0.59 16 22 N -0.31 -5.22 12.58 30.62 0.39 -4.83 16 23 N -0.37 -5.86 3.53 -54.86 -0.19 -6.06 16 24 C 0.16 2.05 3.93 -67.93 -0.27 1.79 16 25 C -0.17 -2.03 9.52 37.16 0.35 -1.68 16 26 C -0.17 -1.93 8.83 37.16 0.33 -1.60 16 27 C 0.09 1.59 10.13 -17.22 -0.17 1.42 16 28 H 0.06 0.93 7.88 -51.93 -0.41 0.52 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 1.38 8.10 -51.93 -0.42 0.96 16 32 H 0.06 0.97 7.81 -51.93 -0.41 0.57 16 33 H 0.04 0.77 7.17 -51.93 -0.37 0.40 16 34 H 0.04 1.01 6.30 -51.93 -0.33 0.69 16 35 H 0.26 6.50 8.31 -40.82 -0.34 6.16 16 36 H 0.40 5.60 7.99 -34.47 -0.28 5.33 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.17 2.17 7.70 -52.48 -0.40 1.76 16 41 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.08 1.11 7.16 -51.93 -0.37 0.74 16 47 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.19 3.57 7.26 -52.49 -0.38 3.19 16 LS Contribution 398.38 15.07 6.00 6.00 Total: -1.00 -29.06 398.38 -8.79 -37.85 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: -7.79 Total: 11.91 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -0.39 Total: -9.31 kcal Atomic # 7 Polarization: -71.36 SS G_CDS: 0.61 Total: -70.75 kcal Atomic # 8 Polarization: -41.58 SS G_CDS: -1.91 Total: -43.49 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.67 Total: 14.93 kcal Atomic # 16 Polarization: 53.50 SS G_CDS: -0.64 Total: 52.86 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -29.06 -8.79 -37.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554534164.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.607 kcal (2) G-P(sol) polarization free energy of solvation -29.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds