Wall clock time and date at job start Wed Apr 1 2020 03:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.46897 * 2 1 4 4 C 1.46501 * 120.00245 * 274.36865 * 3 2 1 5 5 C 1.50699 * 109.46926 * 275.00420 * 4 3 2 6 6 H 1.08000 * 120.00463 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99774 * 180.02562 * 5 4 3 8 8 N 1.31507 * 119.99920 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 120.00012 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47289 * 89.99991 * 9 7 5 11 11 H 1.48496 * 109.47270 * 210.00316 * 9 7 5 12 12 H 1.48499 * 109.47009 * 330.00171 * 9 7 5 13 13 S 1.65598 * 119.99819 * 94.37121 * 3 2 1 14 14 O 1.42103 * 106.40223 * 329.71853 * 13 3 2 15 15 O 1.42098 * 106.40227 * 196.79858 * 13 3 2 16 16 N 1.65603 * 107.21834 * 83.25725 * 13 3 2 17 17 C 1.46499 * 119.99845 * 66.84137 * 16 13 3 18 18 H 1.08997 * 109.47177 * 339.50619 * 17 16 13 19 19 C 1.52998 * 109.47389 * 99.51238 * 17 16 13 20 20 C 1.50707 * 109.46749 * 219.50604 * 17 16 13 21 21 C 1.39861 * 126.04178 * 319.69485 * 20 17 16 22 22 N 1.30840 * 108.20174 * 179.81801 * 21 20 17 23 23 N 1.40079 * 108.20586 * 0.43341 * 22 21 20 24 24 C 1.46503 * 126.03965 * 179.73822 * 23 22 21 25 25 C 1.53003 * 109.47030 * 94.97781 * 24 23 22 26 26 C 1.52997 * 109.47173 * 214.98070 * 24 23 22 27 27 C 1.34944 * 107.92527 * 359.72187 * 23 22 21 28 28 H 1.08997 * 109.47204 * 305.04045 * 1 2 3 29 29 H 1.09000 * 109.47481 * 65.04207 * 1 2 3 30 30 H 1.09001 * 109.47472 * 185.03851 * 1 2 3 31 31 H 1.09001 * 109.46819 * 240.00163 * 2 1 3 32 32 H 1.08994 * 109.47088 * 120.00406 * 2 1 3 33 33 H 1.09001 * 109.47182 * 35.00230 * 4 3 2 34 34 H 1.08993 * 109.47371 * 155.00170 * 4 3 2 35 35 H 0.97010 * 119.99858 * 179.97438 * 8 7 5 36 36 H 0.97000 * 120.00030 * 246.84305 * 16 13 3 37 37 H 1.09006 * 109.46600 * 299.99694 * 19 17 16 38 38 H 1.08997 * 109.47466 * 59.99558 * 19 17 16 39 39 H 1.08997 * 109.47167 * 179.97438 * 19 17 16 40 40 H 1.08003 * 125.90379 * 359.97438 * 21 20 17 41 41 H 1.09002 * 109.46762 * 334.98278 * 24 23 22 42 42 H 1.09000 * 109.47013 * 59.99651 * 25 24 23 43 43 H 1.08995 * 109.47513 * 180.02562 * 25 24 23 44 44 H 1.09001 * 109.46837 * 300.00631 * 25 24 23 45 45 H 1.09004 * 109.46690 * 180.02562 * 26 24 23 46 46 H 1.09001 * 109.46988 * 299.99517 * 26 24 23 47 47 H 1.08994 * 109.47566 * 59.99949 * 26 24 23 48 48 H 1.07999 * 126.12988 * 179.97438 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1713 2.1041 -1.2650 5 6 3.5141 1.7820 -1.8683 6 1 4.1865 1.1067 -1.3602 7 6 3.8848 2.3502 -3.0687 8 7 5.0568 2.0695 -3.5950 9 14 2.7221 3.5188 -3.9474 10 1 2.9810 4.9089 -3.4937 11 1 2.9425 3.4273 -5.4130 12 1 1.3184 3.1492 -3.6339 13 16 2.3973 2.1254 1.4300 14 8 1.5454 1.5580 2.4157 15 8 2.4485 3.5188 1.1559 16 7 3.9393 1.6696 1.8261 17 6 5.0672 2.1058 0.9993 18 1 4.7050 2.3906 0.0115 19 6 5.7484 3.3068 1.6585 20 6 6.0576 0.9778 0.8654 21 6 6.4427 0.0960 1.8803 22 7 7.3134 -0.7445 1.3829 23 7 7.5176 -0.4173 0.0363 24 6 8.4204 -1.1047 -0.8905 25 6 7.6368 -2.1540 -1.6816 26 6 9.0302 -0.0875 -1.8571 27 6 6.7356 0.6427 -0.2568 28 1 -0.3633 0.5900 0.8414 29 1 -0.3634 0.4336 -0.9317 30 1 -0.3634 -1.0237 0.0903 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.3819 1.8027 -1.9536 34 1 2.1033 3.1763 -1.0813 35 1 5.3174 2.4690 -4.4397 36 1 4.0956 1.1139 2.6056 37 1 5.0321 4.1227 1.7554 38 1 6.1107 3.0221 2.6463 39 1 6.5879 3.6310 1.0435 40 1 6.0817 0.1053 2.8982 41 1 9.2157 -1.5932 -0.3276 42 1 6.8414 -1.6654 -2.2444 43 1 8.3085 -2.6657 -2.3708 44 1 7.2023 -2.8785 -0.9929 45 1 9.7016 -0.5991 -2.5468 46 1 8.2348 0.4010 -2.4199 47 1 9.5884 0.6600 -1.2935 48 1 6.6641 1.1357 -1.2150 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000554534164.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:45 Heat of formation + Delta-G solvation = -26.750891 kcal Electronic energy + Delta-G solvation = -30688.914167 eV Core-core repulsion = 26713.548379 eV Total energy + Delta-G solvation = -3975.365788 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.16187 -38.32191 -37.77099 -37.43553 -36.82509 -36.09542 -34.54842 -31.76154 -31.56132 -30.93577 -29.36771 -28.81335 -28.18563 -24.53234 -24.43069 -23.50672 -23.08219 -21.10424 -20.97635 -20.04287 -18.98224 -18.60381 -18.37291 -17.81177 -17.07068 -16.28631 -16.16034 -15.99308 -15.65028 -15.34189 -15.10983 -14.84073 -14.70728 -14.44989 -14.27932 -14.05567 -13.82056 -13.67585 -13.56051 -13.49352 -13.28502 -13.11891 -13.09736 -12.99960 -12.99746 -12.72484 -12.58319 -12.45164 -12.42335 -12.28975 -12.17612 -12.07191 -11.95614 -11.67030 -11.48447 -11.23614 -10.62769 -10.47522 -10.22396 -9.72128 -9.20982 -8.17328 -6.15748 -0.22461 1.06359 1.40759 1.46992 1.51067 1.66727 1.86679 2.14871 2.43041 2.67955 3.17066 3.49060 3.58509 3.95620 3.96478 4.04167 4.13471 4.15052 4.26759 4.41679 4.47038 4.52472 4.57769 4.62942 4.66710 4.69450 4.75353 4.82134 4.88104 4.92984 4.99216 4.99961 5.04006 5.08525 5.17440 5.21839 5.25601 5.38804 5.41008 5.49187 5.58339 5.60458 5.84532 5.86479 6.23687 6.31081 6.45587 6.86260 6.87429 7.45614 8.95085 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.009019 B = 0.005702 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3103.640117 B = 4909.620188 C = 6352.624024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.125 3.875 3 N -0.991 5.991 4 C 0.216 3.784 5 C -0.533 4.533 6 H 0.077 0.923 7 C 0.041 3.959 8 N -0.916 5.916 9 Si 0.904 3.096 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.254 1.254 13 S 2.797 3.203 14 O -1.006 7.006 15 O -1.009 7.009 16 N -1.105 6.105 17 C 0.221 3.779 18 H 0.097 0.903 19 C -0.154 4.154 20 C -0.244 4.244 21 C 0.054 3.946 22 N -0.324 5.324 23 N -0.367 5.367 24 C 0.152 3.848 25 C -0.157 4.157 26 C -0.159 4.159 27 C 0.079 3.921 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.040 0.960 34 H 0.032 0.968 35 H 0.264 0.736 36 H 0.418 0.582 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.202 0.798 41 H 0.112 0.888 42 H 0.043 0.957 43 H 0.102 0.898 44 H 0.053 0.947 45 H 0.106 0.894 46 H 0.053 0.947 47 H 0.061 0.939 48 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.393 -6.187 5.647 9.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.001 4.001 3 N -0.831 5.831 4 C 0.091 3.909 5 C -0.572 4.572 6 H 0.095 0.905 7 C -0.159 4.159 8 N -0.556 5.556 9 Si 0.731 3.269 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.178 1.178 13 S 2.805 3.195 14 O -0.990 6.990 15 O -0.993 6.993 16 N -0.866 5.866 17 C 0.113 3.887 18 H 0.114 0.886 19 C -0.213 4.213 20 C -0.257 4.257 21 C -0.132 4.132 22 N -0.145 5.145 23 N -0.150 5.150 24 C 0.052 3.948 25 C -0.215 4.215 26 C -0.217 4.217 27 C -0.069 4.069 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.105 0.895 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.253 0.747 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.219 0.781 41 H 0.130 0.870 42 H 0.062 0.938 43 H 0.121 0.879 44 H 0.072 0.928 45 H 0.124 0.876 46 H 0.072 0.928 47 H 0.081 0.919 48 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 4.744 -6.545 5.958 10.042 hybrid contribution -0.690 0.982 -0.990 1.556 sum 4.055 -5.563 4.968 8.490 Atomic orbital electron populations 1.22204 0.95489 1.03172 1.01767 1.21178 0.94692 0.81229 1.02959 1.57473 1.79549 1.23969 1.22105 1.19393 0.97193 0.92008 0.82267 1.21671 1.01308 1.28122 1.06062 0.90507 1.25285 0.95938 0.97107 0.97615 1.69896 1.20999 1.44965 1.19694 0.86368 0.81694 0.80658 0.78225 1.20367 1.21141 1.17763 1.01262 0.72953 0.73038 0.72224 1.93537 1.65587 1.79997 1.59902 1.93529 1.87265 1.33025 1.85497 1.55695 1.23218 1.68410 1.39250 1.19096 0.84044 0.90751 0.94818 0.88551 1.22181 1.00520 0.97008 1.01624 1.20029 1.07148 1.04609 0.93925 1.23904 0.95716 0.93014 1.00538 1.77163 1.22034 1.24475 0.90815 1.48975 1.33861 1.24032 1.08126 1.21483 0.90824 0.93605 0.88908 1.22177 1.00996 0.98094 1.00252 1.22162 1.01585 0.98932 0.99058 1.22433 0.93407 0.90912 1.00107 0.93227 0.92651 0.89455 0.90479 0.90407 0.94179 0.95013 0.92679 0.74685 0.92812 0.90734 0.91789 0.78125 0.86979 0.93777 0.87922 0.92786 0.87579 0.92794 0.91944 0.81667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.76 10.24 71.98 0.74 -4.02 16 2 C 0.12 4.05 6.05 86.38 0.52 4.57 16 3 N -0.99 -37.99 2.82 -519.87 -1.47 -39.46 16 4 C 0.22 9.51 4.47 85.63 0.38 9.89 16 5 C -0.53 -25.79 7.97 25.60 0.20 -25.59 16 6 H 0.08 3.90 6.75 -2.91 -0.02 3.88 16 7 C 0.04 2.08 5.47 84.66 0.46 2.55 16 8 N -0.92 -47.80 13.96 21.45 0.30 -47.50 16 9 Si 0.90 40.31 27.47 68.60 1.88 42.20 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 11 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 12 H -0.25 -10.75 6.54 99.48 0.65 -10.10 16 13 S 2.80 105.62 5.97 -56.49 -0.34 105.28 16 14 O -1.01 -38.77 17.11 -128.00 -2.19 -40.96 16 15 O -1.01 -44.50 16.30 -128.00 -2.09 -46.59 16 16 N -1.10 -35.27 5.47 -172.52 -0.94 -36.22 16 17 C 0.22 7.67 3.02 44.25 0.13 7.80 16 18 H 0.10 4.07 4.89 -2.39 -0.01 4.06 16 19 C -0.15 -4.78 9.50 71.98 0.68 -4.10 16 20 C -0.24 -8.15 5.09 -20.14 -0.10 -8.25 16 21 C 0.05 1.59 11.33 85.23 0.97 2.56 16 22 N -0.32 -10.30 12.58 -57.03 -0.72 -11.01 16 23 N -0.37 -11.50 3.53 -327.48 -1.15 -12.66 16 24 C 0.15 3.74 3.93 44.99 0.18 3.91 16 25 C -0.16 -3.73 9.52 71.98 0.69 -3.05 16 26 C -0.16 -3.58 8.83 71.98 0.64 -2.95 16 27 C 0.08 2.81 10.13 83.54 0.85 3.66 16 28 H 0.05 1.50 7.88 -2.39 -0.02 1.48 16 29 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.08 2.56 8.10 -2.39 -0.02 2.54 16 32 H 0.08 2.27 7.81 -2.39 -0.02 2.25 16 33 H 0.04 1.72 7.17 -2.39 -0.02 1.70 16 34 H 0.03 1.48 6.30 -2.39 -0.02 1.47 16 35 H 0.26 13.27 8.31 -92.70 -0.77 12.50 16 36 H 0.42 10.75 7.99 -96.74 -0.77 9.97 16 37 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 38 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.20 4.45 7.70 -2.91 -0.02 4.43 16 41 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 42 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.11 1.73 8.14 -2.38 -0.02 1.71 16 46 H 0.05 1.53 7.16 -2.39 -0.02 1.51 16 47 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.17 6.69 7.26 -2.91 -0.02 6.67 16 Total: -1.00 -62.23 398.38 -0.25 -62.48 By element: Atomic # 1 Polarization: 37.32 SS G_CDS: 0.13 Total: 37.44 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: 6.33 Total: -13.02 kcal Atomic # 7 Polarization: -142.86 SS G_CDS: -3.99 Total: -146.84 kcal Atomic # 8 Polarization: -83.27 SS G_CDS: -4.28 Total: -87.55 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 1.88 Total: 42.20 kcal Atomic # 16 Polarization: 105.62 SS G_CDS: -0.34 Total: 105.28 kcal Total: -62.23 -0.25 -62.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554534164.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.730 kcal (2) G-P(sol) polarization free energy of solvation -62.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds