Wall clock time and date at job start Wed Apr 1 2020 03:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47107 * 2 1 4 4 N 1.46494 * 109.47100 * 239.99523 * 2 1 3 5 5 C 1.34957 * 126.03546 * 84.72213 * 4 2 1 6 6 C 1.35319 * 107.74488 * 179.83801 * 5 4 2 7 7 C 1.50697 * 126.03654 * 180.16066 * 6 5 4 8 8 H 1.08996 * 109.47327 * 340.32849 * 7 6 5 9 9 C 1.52995 * 109.47088 * 100.33231 * 7 6 5 10 10 N 1.46498 * 109.46786 * 220.32928 * 7 6 5 11 11 S 1.65609 * 119.99871 * 142.11985 * 10 7 6 12 12 O 1.42102 * 106.40220 * 179.07881 * 11 10 7 13 13 O 1.42095 * 106.39927 * 311.99919 * 11 10 7 14 14 N 1.65597 * 107.21551 * 65.53682 * 11 10 7 15 15 C 1.46499 * 120.00154 * 266.14689 * 14 11 10 16 16 C 1.46506 * 119.99716 * 86.15330 * 14 11 10 17 17 H 1.08995 * 109.47207 * 354.30763 * 16 14 11 18 18 C 1.53003 * 109.47087 * 114.30579 * 16 14 11 19 19 C 1.50692 * 109.46740 * 234.30146 * 16 14 11 20 20 H 1.07997 * 120.00450 * 0.02562 * 19 16 14 21 21 C 1.37883 * 119.99820 * 179.97438 * 19 16 14 22 22 N 1.31511 * 120.00261 * 0.02562 * 21 19 16 23 23 Si 1.86797 * 120.00019 * 180.02562 * 21 19 16 24 24 H 1.48502 * 109.47216 * 60.00421 * 23 21 19 25 25 H 1.48506 * 109.47172 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47487 * 300.00456 * 23 21 19 27 27 C 1.39868 * 107.91979 * 0.42114 * 6 5 4 28 28 N 1.30837 * 108.20644 * 359.73662 * 27 6 5 29 29 H 1.08998 * 109.47072 * 60.00586 * 1 2 3 30 30 H 1.09003 * 109.47296 * 299.99953 * 1 2 3 31 31 H 1.09000 * 109.46905 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.46887 * 120.00129 * 2 1 3 33 33 H 1.08998 * 109.46957 * 300.00127 * 3 2 1 34 34 H 1.09003 * 109.47004 * 59.99868 * 3 2 1 35 35 H 1.08999 * 109.46844 * 179.97438 * 3 2 1 36 36 H 1.07989 * 126.12291 * 359.97438 * 5 4 2 37 37 H 1.08999 * 109.47617 * 306.30680 * 9 7 6 38 38 H 1.09002 * 109.47274 * 66.31128 * 9 7 6 39 39 H 1.09006 * 109.47359 * 186.30690 * 9 7 6 40 40 H 0.97003 * 120.00642 * 322.12116 * 10 7 6 41 41 H 1.08997 * 109.46735 * 90.00247 * 15 14 11 42 42 H 1.08999 * 109.46974 * 210.00667 * 15 14 11 43 43 H 1.09002 * 109.47006 * 330.00633 * 15 14 11 44 44 H 1.09005 * 109.46875 * 307.18799 * 18 16 14 45 45 H 1.08996 * 109.47432 * 67.18043 * 18 16 14 46 46 H 1.08994 * 109.47302 * 187.18860 * 18 16 14 47 47 H 0.96998 * 120.00349 * 179.97438 * 22 21 19 48 48 H 1.08002 * 125.89662 * 179.72321 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1883 -0.1407 -2.4167 6 6 2.6568 -1.1052 -3.2421 7 6 2.9931 -0.9369 -4.7013 8 1 2.4926 -0.0499 -5.0896 9 6 4.5066 -0.7795 -4.8610 10 7 2.5437 -2.1162 -5.4452 11 16 1.8992 -1.9432 -6.9609 12 8 1.5864 -3.2526 -7.4158 13 8 0.9375 -0.9011 -6.8713 14 7 3.1065 -1.3820 -7.9456 15 6 3.2579 0.0575 -8.1715 16 6 4.0232 -2.3252 -8.5910 17 1 3.8217 -3.3332 -8.2288 18 6 3.8199 -2.2777 -10.1068 19 6 5.4448 -1.9482 -8.2629 20 1 5.6455 -1.0920 -7.6360 21 6 6.4894 -2.6970 -8.7622 22 7 6.2451 -3.7399 -9.5252 23 14 8.2516 -2.2301 -8.3549 24 1 8.4485 -2.2761 -6.8837 25 1 9.1808 -3.1861 -9.0092 26 1 8.5266 -0.8567 -8.8484 27 6 2.7681 -2.2874 -2.5029 28 7 2.3857 -2.0402 -1.2763 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 0.8901 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1300 1.4424 0.0005 36 1 1.9885 0.8859 -2.6858 37 1 4.8576 0.0288 -4.2196 38 1 5.0005 -1.7089 -4.5775 39 1 4.7401 -0.5463 -5.9000 40 1 2.6234 -2.9985 -5.0499 41 1 3.9268 0.4750 -7.4190 42 1 3.6758 0.2276 -9.1637 43 1 2.2836 0.5410 -8.0998 44 1 2.7645 -2.4246 -10.3365 45 1 4.1428 -1.3085 -10.4865 46 1 4.4073 -3.0663 -10.5770 47 1 6.9799 -4.2664 -9.8768 48 1 3.1104 -3.2400 -2.8797 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554700177.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:47 Heat of formation + Delta-G solvation = -3.165629 kcal Electronic energy + Delta-G solvation = -29703.961549 eV Core-core repulsion = 25729.618494 eV Total energy + Delta-G solvation = -3974.343055 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.36533 -36.85654 -36.49073 -36.10505 -35.25435 -35.19307 -32.55467 -30.59356 -30.09103 -29.08954 -28.37259 -27.69755 -25.41183 -25.17700 -23.58889 -22.54277 -20.77124 -20.28324 -20.11555 -18.64278 -17.46799 -17.05498 -16.54838 -16.32105 -15.52303 -15.39979 -15.08525 -14.88456 -14.39199 -14.29419 -13.64885 -13.53574 -13.45593 -13.26770 -12.94962 -12.92802 -12.72412 -12.54957 -12.47254 -11.95269 -11.88595 -11.74801 -11.70246 -11.60567 -11.47402 -11.34280 -11.22762 -11.12558 -11.10034 -10.96504 -10.83477 -10.48004 -10.39040 -10.22322 -9.98651 -9.44297 -9.28119 -9.09849 -8.47528 -8.38194 -7.91898 -6.07131 -4.14390 1.31142 1.86231 2.36809 2.79925 3.27048 3.33143 3.33880 3.59977 4.14606 4.22416 4.37574 4.47747 4.64766 4.68794 4.81841 5.04599 5.08556 5.11885 5.23519 5.24212 5.26515 5.31357 5.41142 5.54242 5.62388 5.71678 5.73340 5.79002 5.87361 5.94793 6.15447 6.24184 6.37898 6.53182 6.61148 6.68468 6.80546 6.89399 6.92585 6.97854 7.13320 7.33742 7.58006 7.67794 7.69677 7.81293 8.06644 8.28906 8.88389 9.51594 10.98659 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.014200 B = 0.003434 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.370390 B = 8152.697062 C = 9187.304109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.156 3.844 3 C -0.165 4.165 4 N -0.370 5.370 5 C 0.062 3.938 6 C -0.231 4.231 7 C 0.234 3.766 8 H 0.088 0.912 9 C -0.168 4.168 10 N -1.119 6.119 11 S 2.783 3.217 12 O -0.984 6.984 13 O -1.001 7.001 14 N -0.990 5.990 15 C 0.099 3.901 16 C 0.273 3.727 17 H 0.054 0.946 18 C -0.143 4.143 19 C -0.521 4.521 20 H 0.065 0.935 21 C 0.065 3.935 22 N -0.888 5.888 23 Si 0.895 3.105 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.278 1.278 27 C 0.061 3.939 28 N -0.299 5.299 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.100 0.900 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.171 0.829 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.081 0.919 40 H 0.411 0.589 41 H 0.044 0.956 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.012 0.988 45 H 0.033 0.967 46 H 0.087 0.913 47 H 0.263 0.737 48 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.070 10.182 16.058 20.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.054 3.946 3 C -0.223 4.223 4 N -0.153 5.153 5 C -0.085 4.085 6 C -0.244 4.244 7 C 0.125 3.875 8 H 0.106 0.894 9 C -0.227 4.227 10 N -0.877 5.877 11 S 2.792 3.208 12 O -0.968 6.968 13 O -0.985 6.985 14 N -0.832 5.832 15 C -0.048 4.048 16 C 0.170 3.830 17 H 0.072 0.928 18 C -0.203 4.203 19 C -0.561 4.561 20 H 0.083 0.917 21 C -0.138 4.138 22 N -0.526 5.526 23 Si 0.722 3.278 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.203 1.203 27 C -0.126 4.126 28 N -0.120 5.120 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.118 0.882 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.189 0.811 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.100 0.900 40 H 0.244 0.756 41 H 0.062 0.938 42 H 0.093 0.907 43 H 0.078 0.922 44 H 0.031 0.969 45 H 0.053 0.947 46 H 0.106 0.894 47 H 0.073 0.927 48 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -8.142 9.617 16.917 21.094 hybrid contribution 1.706 0.208 -0.352 1.754 sum -6.436 9.824 16.565 20.306 Atomic orbital electron populations 1.22252 0.93720 1.03363 1.03056 1.21218 0.94744 0.92717 0.85896 1.22203 1.02408 0.94052 1.03666 1.48752 1.50898 1.07433 1.08198 1.22165 1.01004 0.99778 0.85515 1.20200 1.12991 0.93893 0.97283 1.18794 0.94995 0.87501 0.86173 0.89429 1.22400 0.94346 1.02320 1.03627 1.56075 1.81544 1.14514 1.35565 1.01746 0.73551 0.72934 0.72612 1.93594 1.83640 1.39617 1.79931 1.93516 1.59024 1.59036 1.86879 1.57683 1.50288 1.13848 1.61398 1.21284 1.00358 0.80476 1.02638 1.18646 0.87310 0.87271 0.89751 0.92848 1.22060 0.97439 1.01836 0.98981 1.21323 0.90017 1.13474 1.31281 0.91678 1.24914 0.99039 0.94896 0.94958 1.69888 1.32007 1.17287 1.33417 0.86628 0.84367 0.78190 0.78568 1.20253 1.21409 1.20338 1.23683 0.99032 0.99372 0.90500 1.77334 1.21021 0.93124 1.20474 0.91734 0.90606 0.91612 0.88157 0.91361 0.90081 0.91399 0.81135 0.92599 0.91736 0.90040 0.75650 0.93781 0.90687 0.92168 0.96907 0.94739 0.89402 0.92678 0.80175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.13 9.52 37.16 0.35 -0.78 16 2 C 0.16 1.21 3.93 -67.93 -0.27 0.94 16 3 C -0.17 -0.90 8.84 37.16 0.33 -0.57 16 4 N -0.37 -4.17 3.52 -54.86 -0.19 -4.36 16 5 C 0.06 0.70 10.50 -17.22 -0.18 0.51 16 6 C -0.23 -3.00 5.09 -105.05 -0.53 -3.53 16 7 C 0.23 3.26 3.37 -69.09 -0.23 3.03 16 8 H 0.09 1.19 7.47 -51.93 -0.39 0.80 16 9 C -0.17 -2.38 9.50 37.16 0.35 -2.03 16 10 N -1.12 -17.71 5.49 -5.89 -0.03 -17.74 16 11 S 2.78 53.65 6.09 -107.50 -0.65 53.00 16 12 O -0.98 -22.33 16.90 -57.17 -0.97 -23.29 16 13 O -1.00 -20.12 16.00 -57.17 -0.91 -21.03 16 14 N -0.99 -19.68 3.11 -115.85 -0.36 -20.04 16 15 C 0.10 1.68 9.57 59.85 0.57 2.25 16 16 C 0.27 6.45 2.55 -69.08 -0.18 6.27 16 17 H 0.05 1.41 7.13 -51.93 -0.37 1.04 16 18 C -0.14 -3.38 8.81 37.16 0.33 -3.05 16 19 C -0.52 -12.80 8.30 -34.44 -0.29 -13.08 16 20 H 0.07 1.52 5.94 -52.49 -0.31 1.21 16 21 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 22 N -0.89 -24.06 11.41 55.43 0.63 -23.43 16 23 Si 0.89 20.05 29.54 -169.99 -5.02 15.03 16 24 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 27 C 0.06 0.81 11.31 -17.37 -0.20 0.61 16 28 N -0.30 -4.10 12.58 30.62 0.39 -3.72 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.10 0.76 8.14 -51.92 -0.42 0.33 16 33 H 0.07 0.35 7.16 -51.93 -0.37 -0.02 16 34 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.17 1.42 7.27 -52.49 -0.38 1.04 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.08 1.29 5.20 -51.93 -0.27 1.03 16 40 H 0.41 5.94 7.94 -34.47 -0.27 5.66 16 41 H 0.04 0.67 6.54 -51.93 -0.34 0.33 16 42 H 0.07 1.29 6.88 -51.93 -0.36 0.93 16 43 H 0.06 0.94 7.00 -51.93 -0.36 0.58 16 44 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.03 0.76 7.15 -51.93 -0.37 0.39 16 46 H 0.09 2.25 6.30 -51.93 -0.33 1.92 16 47 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 48 H 0.18 2.09 7.69 -52.49 -0.40 1.69 16 LS Contribution 393.82 15.07 5.93 5.93 Total: -1.00 -32.41 393.82 -8.69 -41.10 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -7.47 Total: 6.40 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -0.03 Total: -7.86 kcal Atomic # 7 Polarization: -69.72 SS G_CDS: 0.43 Total: -69.29 kcal Atomic # 8 Polarization: -42.44 SS G_CDS: -1.88 Total: -44.32 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Atomic # 16 Polarization: 53.65 SS G_CDS: -0.65 Total: 53.00 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.41 -8.69 -41.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554700177.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.939 kcal (2) G-P(sol) polarization free energy of solvation -32.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds