Wall clock time and date at job start Wed Apr 1 2020 03:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47107 * 2 1 4 4 N 1.46494 * 109.47100 * 239.99523 * 2 1 3 5 5 C 1.34957 * 126.03546 * 84.72213 * 4 2 1 6 6 C 1.35319 * 107.74488 * 179.83801 * 5 4 2 7 7 C 1.50697 * 126.03654 * 180.16066 * 6 5 4 8 8 H 1.08996 * 109.47327 * 340.32849 * 7 6 5 9 9 C 1.52995 * 109.47088 * 100.33231 * 7 6 5 10 10 N 1.46498 * 109.46786 * 220.32928 * 7 6 5 11 11 S 1.65609 * 119.99871 * 142.11985 * 10 7 6 12 12 O 1.42102 * 106.40220 * 179.07881 * 11 10 7 13 13 O 1.42095 * 106.39927 * 311.99919 * 11 10 7 14 14 N 1.65597 * 107.21551 * 65.53682 * 11 10 7 15 15 C 1.46499 * 120.00154 * 266.14689 * 14 11 10 16 16 C 1.46506 * 119.99716 * 86.15330 * 14 11 10 17 17 H 1.08995 * 109.47207 * 354.30763 * 16 14 11 18 18 C 1.53003 * 109.47087 * 114.30579 * 16 14 11 19 19 C 1.50692 * 109.46740 * 234.30146 * 16 14 11 20 20 H 1.07997 * 120.00450 * 0.02562 * 19 16 14 21 21 C 1.37883 * 119.99820 * 179.97438 * 19 16 14 22 22 N 1.31511 * 120.00261 * 0.02562 * 21 19 16 23 23 Si 1.86797 * 120.00019 * 180.02562 * 21 19 16 24 24 H 1.48502 * 109.47216 * 60.00421 * 23 21 19 25 25 H 1.48506 * 109.47172 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47487 * 300.00456 * 23 21 19 27 27 C 1.39868 * 107.91979 * 0.42114 * 6 5 4 28 28 N 1.30837 * 108.20644 * 359.73662 * 27 6 5 29 29 H 1.08998 * 109.47072 * 60.00586 * 1 2 3 30 30 H 1.09003 * 109.47296 * 299.99953 * 1 2 3 31 31 H 1.09000 * 109.46905 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.46887 * 120.00129 * 2 1 3 33 33 H 1.08998 * 109.46957 * 300.00127 * 3 2 1 34 34 H 1.09003 * 109.47004 * 59.99868 * 3 2 1 35 35 H 1.08999 * 109.46844 * 179.97438 * 3 2 1 36 36 H 1.07989 * 126.12291 * 359.97438 * 5 4 2 37 37 H 1.08999 * 109.47617 * 306.30680 * 9 7 6 38 38 H 1.09002 * 109.47274 * 66.31128 * 9 7 6 39 39 H 1.09006 * 109.47359 * 186.30690 * 9 7 6 40 40 H 0.97003 * 120.00642 * 322.12116 * 10 7 6 41 41 H 1.08997 * 109.46735 * 90.00247 * 15 14 11 42 42 H 1.08999 * 109.46974 * 210.00667 * 15 14 11 43 43 H 1.09002 * 109.47006 * 330.00633 * 15 14 11 44 44 H 1.09005 * 109.46875 * 307.18799 * 18 16 14 45 45 H 1.08996 * 109.47432 * 67.18043 * 18 16 14 46 46 H 1.08994 * 109.47302 * 187.18860 * 18 16 14 47 47 H 0.96998 * 120.00349 * 179.97438 * 22 21 19 48 48 H 1.08002 * 125.89662 * 179.72321 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1883 -0.1407 -2.4167 6 6 2.6568 -1.1052 -3.2421 7 6 2.9931 -0.9369 -4.7013 8 1 2.4926 -0.0499 -5.0896 9 6 4.5066 -0.7795 -4.8610 10 7 2.5437 -2.1162 -5.4452 11 16 1.8992 -1.9432 -6.9609 12 8 1.5864 -3.2526 -7.4158 13 8 0.9375 -0.9011 -6.8713 14 7 3.1065 -1.3820 -7.9456 15 6 3.2579 0.0575 -8.1715 16 6 4.0232 -2.3252 -8.5910 17 1 3.8217 -3.3332 -8.2288 18 6 3.8199 -2.2777 -10.1068 19 6 5.4448 -1.9482 -8.2629 20 1 5.6455 -1.0920 -7.6360 21 6 6.4894 -2.6970 -8.7622 22 7 6.2451 -3.7399 -9.5252 23 14 8.2516 -2.2301 -8.3549 24 1 8.4485 -2.2761 -6.8837 25 1 9.1808 -3.1861 -9.0092 26 1 8.5266 -0.8567 -8.8484 27 6 2.7681 -2.2874 -2.5029 28 7 2.3857 -2.0402 -1.2763 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 0.8901 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1300 1.4424 0.0005 36 1 1.9885 0.8859 -2.6858 37 1 4.8576 0.0288 -4.2196 38 1 5.0005 -1.7089 -4.5775 39 1 4.7401 -0.5463 -5.9000 40 1 2.6234 -2.9985 -5.0499 41 1 3.9268 0.4750 -7.4190 42 1 3.6758 0.2276 -9.1637 43 1 2.2836 0.5410 -8.0998 44 1 2.7645 -2.4246 -10.3365 45 1 4.1428 -1.3085 -10.4865 46 1 4.4073 -3.0663 -10.5770 47 1 6.9799 -4.2664 -9.8768 48 1 3.1104 -3.2400 -2.8797 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000554700177.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:46 Heat of formation + Delta-G solvation = -25.661722 kcal Electronic energy + Delta-G solvation = -29704.937053 eV Core-core repulsion = 25729.618494 eV Total energy + Delta-G solvation = -3975.318558 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.26676 -38.32509 -37.91631 -37.48908 -36.84353 -36.14776 -34.41383 -31.65337 -31.00149 -30.87789 -29.39475 -28.18413 -27.15648 -26.89820 -24.47830 -23.51859 -22.56514 -21.20607 -21.02730 -20.06416 -18.77431 -18.50424 -18.18471 -17.78714 -16.98435 -16.52755 -16.22554 -15.88941 -15.70166 -15.15885 -15.12954 -14.84706 -14.62783 -14.60080 -14.32807 -13.76481 -13.68325 -13.56105 -13.39357 -13.23213 -13.17114 -13.13710 -13.10262 -13.02698 -12.85552 -12.69867 -12.61407 -12.45284 -12.42444 -12.30333 -12.19760 -12.09534 -11.98469 -11.77933 -11.38130 -11.02756 -10.49342 -10.43477 -10.33479 -9.58161 -9.31365 -8.02147 -6.14536 -0.22037 0.96781 1.51076 1.51644 1.58048 1.60969 1.78692 2.13739 2.51697 2.71125 3.27812 3.44991 3.57325 3.88794 3.94361 3.99962 4.11525 4.14310 4.23671 4.32122 4.52332 4.53210 4.65603 4.69977 4.81937 4.82671 4.83625 4.86229 4.93240 4.96455 5.01143 5.09576 5.15613 5.18842 5.22851 5.24060 5.26360 5.43349 5.59128 5.68470 5.70248 5.81206 5.92621 6.11440 6.18325 6.25249 6.37802 6.76127 6.95493 7.54628 9.03194 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.014200 B = 0.003434 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.370390 B = 8152.697062 C = 9187.304109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.146 3.854 3 C -0.159 4.159 4 N -0.366 5.366 5 C 0.072 3.928 6 C -0.251 4.251 7 C 0.236 3.764 8 H 0.097 0.903 9 C -0.163 4.163 10 N -1.112 6.112 11 S 2.798 3.202 12 O -1.023 7.023 13 O -1.007 7.007 14 N -0.993 5.993 15 C 0.092 3.908 16 C 0.280 3.720 17 H 0.020 0.980 18 C -0.138 4.138 19 C -0.518 4.518 20 H 0.078 0.922 21 C 0.016 3.984 22 N -0.922 5.922 23 Si 0.954 3.046 24 H -0.271 1.271 25 H -0.296 1.296 26 H -0.269 1.269 27 C 0.048 3.952 28 N -0.329 5.329 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.044 0.956 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.060 0.940 36 H 0.203 0.797 37 H 0.078 0.922 38 H 0.051 0.949 39 H 0.064 0.936 40 H 0.416 0.584 41 H 0.064 0.936 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.017 0.983 45 H 0.043 0.957 46 H 0.063 0.937 47 H 0.260 0.740 48 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.997 13.022 17.843 23.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.045 3.955 3 C -0.217 4.217 4 N -0.149 5.149 5 C -0.076 4.076 6 C -0.264 4.264 7 C 0.128 3.872 8 H 0.115 0.885 9 C -0.222 4.222 10 N -0.873 5.873 11 S 2.807 3.193 12 O -1.007 7.007 13 O -0.990 6.990 14 N -0.835 5.835 15 C -0.053 4.053 16 C 0.175 3.825 17 H 0.038 0.962 18 C -0.197 4.197 19 C -0.557 4.557 20 H 0.096 0.904 21 C -0.184 4.184 22 N -0.561 5.561 23 Si 0.780 3.220 24 H -0.196 1.196 25 H -0.222 1.222 26 H -0.194 1.194 27 C -0.138 4.138 28 N -0.151 5.151 29 H 0.082 0.918 30 H 0.121 0.879 31 H 0.063 0.937 32 H 0.117 0.883 33 H 0.094 0.906 34 H 0.123 0.877 35 H 0.079 0.921 36 H 0.220 0.780 37 H 0.096 0.904 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.250 0.750 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.094 0.906 44 H 0.036 0.964 45 H 0.062 0.938 46 H 0.082 0.918 47 H 0.069 0.931 48 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -8.082 12.483 18.725 23.912 hybrid contribution 1.599 -0.622 -0.795 1.891 sum -6.484 11.860 17.930 22.454 Atomic orbital electron populations 1.22225 0.92903 1.02385 1.04334 1.21595 0.95378 0.93865 0.84618 1.22197 1.01926 0.92321 1.05229 1.49108 1.49821 1.06713 1.09243 1.22632 0.99135 1.00742 0.85051 1.20132 1.14933 0.94472 0.96838 1.18892 0.94866 0.86732 0.86672 0.88526 1.22337 0.94428 1.02479 1.02910 1.55831 1.81303 1.15763 1.34384 1.01113 0.73366 0.71841 0.72963 1.93538 1.84416 1.41669 1.81078 1.93501 1.59311 1.58995 1.87195 1.57533 1.49477 1.14668 1.61824 1.21503 1.01845 0.78744 1.03216 1.18303 0.87831 0.86594 0.89750 0.96209 1.21953 0.97332 1.01419 0.99025 1.21612 0.90294 1.13299 1.30487 0.90393 1.25652 1.02675 0.94951 0.95091 1.70038 1.32755 1.18516 1.34841 0.85680 0.79984 0.77914 0.78402 1.19630 1.22180 1.19401 1.23859 0.99260 0.99990 0.90686 1.77280 1.22093 0.94895 1.20797 0.91839 0.87926 0.93685 0.88256 0.90596 0.87747 0.92085 0.77980 0.90362 0.93018 0.91670 0.74957 0.91768 0.90954 0.90584 0.96360 0.93755 0.91806 0.93062 0.79806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 9.52 71.98 0.69 -1.15 16 2 C 0.15 1.93 3.93 44.99 0.18 2.11 16 3 C -0.16 -1.20 8.84 71.98 0.64 -0.57 16 4 N -0.37 -7.61 3.52 -327.49 -1.15 -8.76 16 5 C 0.07 1.44 10.50 83.54 0.88 2.32 16 6 C -0.25 -6.11 5.09 -20.14 -0.10 -6.22 16 7 C 0.24 6.18 3.37 44.24 0.15 6.33 16 8 H 0.10 2.36 7.47 -2.39 -0.02 2.34 16 9 C -0.16 -4.32 9.50 71.98 0.68 -3.63 16 10 N -1.11 -34.62 5.49 -172.54 -0.95 -35.57 16 11 S 2.80 106.94 6.09 -56.49 -0.34 106.59 16 12 O -1.02 -47.36 16.90 -128.00 -2.16 -49.52 16 13 O -1.01 -39.07 16.00 -128.00 -2.05 -41.12 16 14 N -0.99 -38.86 3.11 -520.45 -1.62 -40.48 16 15 C 0.09 2.96 9.57 127.77 1.22 4.18 16 16 C 0.28 13.31 2.55 44.24 0.11 13.42 16 17 H 0.02 1.09 7.13 -2.39 -0.02 1.07 16 18 C -0.14 -6.55 8.81 71.98 0.63 -5.91 16 19 C -0.52 -25.14 8.30 25.60 0.21 -24.93 16 20 H 0.08 3.52 5.94 -2.91 -0.02 3.51 16 21 C 0.02 0.80 5.30 84.66 0.45 1.25 16 22 N -0.92 -50.88 11.41 21.45 0.24 -50.64 16 23 Si 0.95 40.75 29.54 68.60 2.03 42.78 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 25 H -0.30 -12.90 7.11 99.48 0.71 -12.19 16 26 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 27 C 0.05 1.24 11.31 85.24 0.96 2.21 16 28 N -0.33 -8.84 12.58 -57.02 -0.72 -9.55 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.10 0.61 8.14 -2.39 -0.02 0.60 16 31 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.08 0.48 7.16 -2.39 -0.02 0.46 16 34 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 35 H 0.06 0.57 8.14 -2.39 -0.02 0.56 16 36 H 0.20 2.57 7.27 -2.92 -0.02 2.54 16 37 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.06 1.94 5.20 -2.38 -0.01 1.93 16 40 H 0.42 12.13 7.94 -96.74 -0.77 11.36 16 41 H 0.06 1.79 6.54 -2.39 -0.02 1.78 16 42 H 0.07 2.36 6.88 -2.39 -0.02 2.34 16 43 H 0.08 2.20 7.00 -2.39 -0.02 2.18 16 44 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 45 H 0.04 1.96 7.15 -2.39 -0.02 1.94 16 46 H 0.06 3.35 6.30 -2.39 -0.02 3.34 16 47 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 48 H 0.19 4.35 7.69 -2.91 -0.02 4.33 16 Total: -1.00 -69.74 393.82 0.18 -69.56 By element: Atomic # 1 Polarization: 27.09 SS G_CDS: 0.20 Total: 27.29 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: 6.70 Total: -10.60 kcal Atomic # 7 Polarization: -140.80 SS G_CDS: -4.19 Total: -144.99 kcal Atomic # 8 Polarization: -86.42 SS G_CDS: -4.21 Total: -90.64 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.78 kcal Atomic # 16 Polarization: 106.94 SS G_CDS: -0.34 Total: 106.59 kcal Total: -69.74 0.18 -69.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554700177.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.903 kcal (2) G-P(sol) polarization free energy of solvation -69.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds