Wall clock time and date at job start Wed Apr 1 2020 03:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47488 * 2 1 4 4 N 1.46504 * 109.46978 * 120.00218 * 2 1 3 5 5 C 1.34951 * 126.03463 * 275.02274 * 4 2 1 6 6 C 1.35320 * 107.74569 * 180.02562 * 5 4 2 7 7 C 1.50697 * 126.04023 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.46924 * 19.99376 * 7 6 5 9 9 C 1.52997 * 109.46980 * 259.99867 * 7 6 5 10 10 N 1.46499 * 109.47051 * 139.99641 * 7 6 5 11 11 S 1.65604 * 120.00009 * 214.99877 * 10 7 6 12 12 O 1.42089 * 106.40239 * 178.54105 * 11 10 7 13 13 O 1.42104 * 106.39910 * 311.46524 * 11 10 7 14 14 N 1.65603 * 107.21573 * 64.99903 * 11 10 7 15 15 C 1.46505 * 119.99671 * 90.00356 * 14 11 10 16 16 C 1.46500 * 120.00167 * 269.99884 * 14 11 10 17 17 H 1.08997 * 109.47030 * 0.02562 * 16 14 11 18 18 C 1.53000 * 109.46801 * 120.00287 * 16 14 11 19 19 C 1.50701 * 109.47294 * 239.99952 * 16 14 11 20 20 H 1.08005 * 119.99928 * 0.02562 * 19 16 14 21 21 C 1.37872 * 120.00147 * 179.97438 * 19 16 14 22 22 N 1.31516 * 119.99797 * 0.02562 * 21 19 16 23 23 Si 1.86798 * 119.99997 * 180.02562 * 21 19 16 24 24 H 1.48497 * 109.47314 * 90.00278 * 23 21 19 25 25 H 1.48498 * 109.47143 * 210.00092 * 23 21 19 26 26 H 1.48503 * 109.47211 * 329.99880 * 23 21 19 27 27 C 1.39866 * 107.91898 * 359.97438 * 6 5 4 28 28 N 1.30844 * 108.20609 * 0.02562 * 27 6 5 29 29 H 1.09001 * 109.47675 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46986 * 300.00098 * 1 2 3 31 31 H 1.09004 * 109.47339 * 59.99891 * 1 2 3 32 32 H 1.08998 * 109.46802 * 239.99356 * 2 1 3 33 33 H 1.08998 * 109.47038 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.46920 * 300.00365 * 3 2 1 35 35 H 1.09002 * 109.47246 * 59.99539 * 3 2 1 36 36 H 1.07996 * 126.12664 * 359.95494 * 5 4 2 37 37 H 1.09002 * 109.47379 * 60.00305 * 9 7 6 38 38 H 1.09004 * 109.47338 * 180.02562 * 9 7 6 39 39 H 1.08994 * 109.47036 * 299.99615 * 9 7 6 40 40 H 0.96993 * 120.00122 * 35.00287 * 10 7 6 41 41 H 1.08995 * 109.47132 * 89.99656 * 15 14 11 42 42 H 1.08999 * 109.46920 * 209.99394 * 15 14 11 43 43 H 1.08996 * 109.47163 * 329.99540 * 15 14 11 44 44 H 1.09009 * 109.46926 * 180.02562 * 18 16 14 45 45 H 1.08998 * 109.47409 * 299.99929 * 18 16 14 46 46 H 1.09000 * 109.47536 * 60.00219 * 18 16 14 47 47 H 0.97003 * 119.99675 * 180.02562 * 22 21 19 48 48 H 1.08004 * 125.89969 * 180.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1928 -0.1394 2.4155 6 6 2.6567 -1.1052 3.2422 7 6 2.9919 -0.9371 4.7018 8 1 2.4896 -0.0511 5.0902 9 6 4.5049 -0.7772 4.8624 10 7 2.5440 -2.1176 5.4447 11 16 1.9647 -1.9545 6.9875 12 8 1.5864 -3.2560 7.4138 13 8 2.9052 -1.1504 7.6863 14 7 0.5688 -1.0682 6.8958 15 6 -0.7182 -1.7451 6.7169 16 6 0.6207 0.3926 6.9935 17 1 1.6550 0.7115 7.1227 18 6 0.0532 1.0098 5.7138 19 6 -0.1967 0.8464 8.1755 20 1 -0.7039 0.1193 8.7924 21 6 -0.2963 2.1896 8.4699 22 7 0.3217 3.0749 7.7189 23 14 -1.3090 2.7520 9.9353 24 1 -0.4456 2.8056 11.1423 25 1 -1.8648 4.1021 9.6640 26 1 -2.4216 1.7956 10.1645 27 6 2.7689 -2.2871 2.5029 28 7 2.3867 -2.0398 1.2762 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8932 -0.5139 -0.8899 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.9983 0.8886 2.6833 37 1 4.8382 0.1012 4.3097 38 1 4.7475 -0.6561 5.9182 39 1 5.0072 -1.6631 4.4740 40 1 2.5867 -2.9948 5.0330 41 1 -1.1452 -1.9774 7.6925 42 1 -1.3983 -1.0934 6.1685 43 1 -0.5685 -2.6681 6.1568 44 1 0.0923 2.0968 5.7863 45 1 0.6444 0.6816 4.8589 46 1 -0.9811 0.6909 5.5842 47 1 0.2520 4.0200 7.9263 48 1 3.1118 -3.2395 2.8794 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554700178.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:52 Heat of formation + Delta-G solvation = -2.312498 kcal Electronic energy + Delta-G solvation = -30174.448709 eV Core-core repulsion = 26200.142649 eV Total energy + Delta-G solvation = -3974.306060 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.33238 -36.89495 -36.41871 -36.12065 -35.25529 -35.12000 -32.56300 -30.59415 -30.07453 -29.08788 -28.43032 -27.59634 -25.56320 -25.15035 -23.59015 -22.55461 -20.79081 -20.19577 -20.07966 -18.62171 -17.48747 -16.99374 -16.69155 -16.18915 -15.57058 -15.43096 -14.91567 -14.87392 -14.36904 -14.21951 -13.72690 -13.55757 -13.39932 -13.15306 -12.97612 -12.84522 -12.76570 -12.50261 -12.41581 -12.10432 -11.91468 -11.71692 -11.64792 -11.58704 -11.47455 -11.39797 -11.23925 -11.18750 -11.03080 -10.93391 -10.80901 -10.45177 -10.36117 -10.26283 -10.01030 -9.40864 -9.33300 -9.22060 -8.45108 -8.35863 -7.93789 -6.07885 -4.13264 1.28447 1.91195 2.41517 2.80636 3.29335 3.35851 3.39121 3.62911 4.19971 4.23141 4.40776 4.57304 4.73761 4.77182 4.88851 5.07401 5.14459 5.17928 5.24044 5.31289 5.37141 5.41021 5.48807 5.55708 5.61590 5.64642 5.76858 5.84312 5.85476 5.95073 6.11217 6.19822 6.38174 6.47149 6.51421 6.62458 6.67731 6.76889 6.79520 6.99017 7.02544 7.25936 7.51568 7.64964 7.71806 7.79400 8.03262 8.28210 8.88968 9.52468 10.97872 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.010812 B = 0.004212 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.208352 B = 6646.823181 C = 8099.279997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.157 3.843 3 C -0.167 4.167 4 N -0.367 5.367 5 C 0.071 3.929 6 C -0.234 4.234 7 C 0.230 3.770 8 H 0.096 0.904 9 C -0.163 4.163 10 N -1.125 6.125 11 S 2.779 3.221 12 O -0.999 6.999 13 O -0.973 6.973 14 N -0.991 5.991 15 C 0.113 3.887 16 C 0.267 3.733 17 H 0.060 0.940 18 C -0.149 4.149 19 C -0.517 4.517 20 H 0.062 0.938 21 C 0.064 3.936 22 N -0.891 5.891 23 Si 0.897 3.103 24 H -0.280 1.280 25 H -0.287 1.287 26 H -0.274 1.274 27 C 0.057 3.943 28 N -0.301 5.301 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.174 0.826 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.055 0.945 40 H 0.406 0.594 41 H 0.047 0.953 42 H 0.070 0.930 43 H 0.048 0.952 44 H 0.092 0.908 45 H 0.012 0.988 46 H 0.033 0.967 47 H 0.262 0.738 48 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.142 -4.395 -16.350 17.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.055 3.945 3 C -0.225 4.225 4 N -0.150 5.150 5 C -0.076 4.076 6 C -0.247 4.247 7 C 0.121 3.879 8 H 0.114 0.886 9 C -0.222 4.222 10 N -0.883 5.883 11 S 2.787 3.213 12 O -0.983 6.983 13 O -0.956 6.956 14 N -0.833 5.833 15 C -0.034 4.034 16 C 0.164 3.836 17 H 0.077 0.923 18 C -0.209 4.209 19 C -0.557 4.557 20 H 0.080 0.920 21 C -0.138 4.138 22 N -0.530 5.530 23 Si 0.725 3.275 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.199 1.199 27 C -0.130 4.130 28 N -0.121 5.121 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.117 0.883 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.191 0.809 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.239 0.761 41 H 0.066 0.934 42 H 0.088 0.912 43 H 0.066 0.934 44 H 0.111 0.889 45 H 0.031 0.969 46 H 0.052 0.948 47 H 0.072 0.928 48 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 3.331 -4.776 -16.780 17.762 hybrid contribution -0.718 0.498 1.035 1.354 sum 2.613 -4.279 -15.745 16.524 Atomic orbital electron populations 1.22254 0.93597 1.03295 1.03290 1.21229 0.94855 0.92735 0.85674 1.22218 1.02293 0.94029 1.03942 1.48754 1.50623 1.07271 1.08359 1.22268 1.00012 0.99999 0.85319 1.20125 1.13668 0.93833 0.97075 1.18887 0.94875 0.87763 0.86332 0.88586 1.22279 0.94962 1.01729 1.03203 1.56278 1.80860 1.14682 1.36436 1.01986 0.73552 0.72573 0.73149 1.93540 1.83884 1.40508 1.80407 1.93599 1.61329 1.70179 1.70492 1.57682 1.19407 1.18573 1.87686 1.21095 0.86345 0.95213 1.00718 1.18733 0.98537 0.72027 0.94317 0.92287 1.22169 0.98460 1.04547 0.95690 1.21340 1.30844 0.92049 1.11462 0.91998 1.24881 0.95689 0.96551 0.96683 1.69845 1.43102 1.01644 1.38433 0.86518 0.80335 0.77827 0.82856 1.20555 1.21248 1.19918 1.23581 0.99597 0.99116 0.90660 1.77301 1.21010 0.93399 1.20410 0.91702 0.91472 0.90607 0.88276 0.91477 0.90048 0.91071 0.80862 0.91874 0.90879 0.92557 0.76142 0.93415 0.91172 0.93373 0.88902 0.96924 0.94819 0.92779 0.80529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.32 9.52 37.16 0.35 -0.97 16 2 C 0.16 1.33 3.93 -67.93 -0.27 1.07 16 3 C -0.17 -1.11 8.84 37.16 0.33 -0.78 16 4 N -0.37 -4.29 3.53 -54.86 -0.19 -4.48 16 5 C 0.07 0.86 10.50 -17.22 -0.18 0.68 16 6 C -0.23 -3.05 5.09 -105.05 -0.53 -3.58 16 7 C 0.23 3.31 3.23 -69.09 -0.22 3.08 16 8 H 0.10 1.56 5.49 -51.93 -0.29 1.28 16 9 C -0.16 -2.17 9.50 37.16 0.35 -1.82 16 10 N -1.13 -16.75 5.51 -5.88 -0.03 -16.78 16 11 S 2.78 54.13 6.00 -107.50 -0.65 53.49 16 12 O -1.00 -20.94 17.21 -57.17 -0.98 -21.93 16 13 O -0.97 -22.14 15.96 -57.17 -0.91 -23.06 16 14 N -0.99 -20.28 3.12 -115.85 -0.36 -20.64 16 15 C 0.11 2.04 9.53 59.85 0.57 2.61 16 16 C 0.27 6.27 1.91 -69.08 -0.13 6.13 16 17 H 0.06 1.53 6.74 -51.93 -0.35 1.18 16 18 C -0.15 -3.17 8.83 37.16 0.33 -2.84 16 19 C -0.52 -13.67 8.37 -34.44 -0.29 -13.95 16 20 H 0.06 1.65 7.65 -52.48 -0.40 1.25 16 21 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 22 N -0.89 -23.97 11.32 55.43 0.63 -23.35 16 23 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 25 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 26 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 27 C 0.06 0.71 11.28 -17.36 -0.20 0.51 16 28 N -0.30 -4.01 12.58 30.63 0.39 -3.63 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.50 7.16 -51.93 -0.37 0.13 16 36 H 0.17 1.86 7.26 -52.49 -0.38 1.47 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 1.11 7.64 -51.93 -0.40 0.71 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.41 5.03 7.88 -34.47 -0.27 4.76 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.07 1.22 6.43 -51.93 -0.33 0.89 16 43 H 0.05 0.75 7.79 -51.93 -0.40 0.35 16 44 H 0.09 2.19 6.07 -51.92 -0.32 1.87 16 45 H 0.01 0.22 6.74 -51.93 -0.35 -0.13 16 46 H 0.03 0.69 6.66 -51.93 -0.35 0.35 16 47 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 48 H 0.18 1.77 7.68 -52.48 -0.40 1.37 16 LS Contribution 394.70 15.07 5.95 5.95 Total: -1.00 -32.72 394.70 -8.72 -41.44 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -7.55 Total: 5.39 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: 0.02 Total: -8.25 kcal Atomic # 7 Polarization: -69.31 SS G_CDS: 0.43 Total: -68.88 kcal Atomic # 8 Polarization: -43.09 SS G_CDS: -1.90 Total: -44.98 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 54.13 SS G_CDS: -0.65 Total: 53.49 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.72 -8.72 -41.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554700178.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.128 kcal (2) G-P(sol) polarization free energy of solvation -32.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds