Wall clock time and date at job start Wed Apr 1 2020 03:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47488 * 2 1 4 4 N 1.46504 * 109.46978 * 120.00218 * 2 1 3 5 5 C 1.34951 * 126.03463 * 275.02274 * 4 2 1 6 6 C 1.35320 * 107.74569 * 180.02562 * 5 4 2 7 7 C 1.50697 * 126.04023 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.46924 * 19.99376 * 7 6 5 9 9 C 1.52997 * 109.46980 * 259.99867 * 7 6 5 10 10 N 1.46499 * 109.47051 * 139.99641 * 7 6 5 11 11 S 1.65604 * 120.00009 * 214.99877 * 10 7 6 12 12 O 1.42089 * 106.40239 * 178.54105 * 11 10 7 13 13 O 1.42104 * 106.39910 * 311.46524 * 11 10 7 14 14 N 1.65603 * 107.21573 * 64.99903 * 11 10 7 15 15 C 1.46505 * 119.99671 * 90.00356 * 14 11 10 16 16 C 1.46500 * 120.00167 * 269.99884 * 14 11 10 17 17 H 1.08997 * 109.47030 * 0.02562 * 16 14 11 18 18 C 1.53000 * 109.46801 * 120.00287 * 16 14 11 19 19 C 1.50701 * 109.47294 * 239.99952 * 16 14 11 20 20 H 1.08005 * 119.99928 * 0.02562 * 19 16 14 21 21 C 1.37872 * 120.00147 * 179.97438 * 19 16 14 22 22 N 1.31516 * 119.99797 * 0.02562 * 21 19 16 23 23 Si 1.86798 * 119.99997 * 180.02562 * 21 19 16 24 24 H 1.48497 * 109.47314 * 90.00278 * 23 21 19 25 25 H 1.48498 * 109.47143 * 210.00092 * 23 21 19 26 26 H 1.48503 * 109.47211 * 329.99880 * 23 21 19 27 27 C 1.39866 * 107.91898 * 359.97438 * 6 5 4 28 28 N 1.30844 * 108.20609 * 0.02562 * 27 6 5 29 29 H 1.09001 * 109.47675 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46986 * 300.00098 * 1 2 3 31 31 H 1.09004 * 109.47339 * 59.99891 * 1 2 3 32 32 H 1.08998 * 109.46802 * 239.99356 * 2 1 3 33 33 H 1.08998 * 109.47038 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.46920 * 300.00365 * 3 2 1 35 35 H 1.09002 * 109.47246 * 59.99539 * 3 2 1 36 36 H 1.07996 * 126.12664 * 359.95494 * 5 4 2 37 37 H 1.09002 * 109.47379 * 60.00305 * 9 7 6 38 38 H 1.09004 * 109.47338 * 180.02562 * 9 7 6 39 39 H 1.08994 * 109.47036 * 299.99615 * 9 7 6 40 40 H 0.96993 * 120.00122 * 35.00287 * 10 7 6 41 41 H 1.08995 * 109.47132 * 89.99656 * 15 14 11 42 42 H 1.08999 * 109.46920 * 209.99394 * 15 14 11 43 43 H 1.08996 * 109.47163 * 329.99540 * 15 14 11 44 44 H 1.09009 * 109.46926 * 180.02562 * 18 16 14 45 45 H 1.08998 * 109.47409 * 299.99929 * 18 16 14 46 46 H 1.09000 * 109.47536 * 60.00219 * 18 16 14 47 47 H 0.97003 * 119.99675 * 180.02562 * 22 21 19 48 48 H 1.08004 * 125.89969 * 180.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1928 -0.1394 2.4155 6 6 2.6567 -1.1052 3.2422 7 6 2.9919 -0.9371 4.7018 8 1 2.4896 -0.0511 5.0902 9 6 4.5049 -0.7772 4.8624 10 7 2.5440 -2.1176 5.4447 11 16 1.9647 -1.9545 6.9875 12 8 1.5864 -3.2560 7.4138 13 8 2.9052 -1.1504 7.6863 14 7 0.5688 -1.0682 6.8958 15 6 -0.7182 -1.7451 6.7169 16 6 0.6207 0.3926 6.9935 17 1 1.6550 0.7115 7.1227 18 6 0.0532 1.0098 5.7138 19 6 -0.1967 0.8464 8.1755 20 1 -0.7039 0.1193 8.7924 21 6 -0.2963 2.1896 8.4699 22 7 0.3217 3.0749 7.7189 23 14 -1.3090 2.7520 9.9353 24 1 -0.4456 2.8056 11.1423 25 1 -1.8648 4.1021 9.6640 26 1 -2.4216 1.7956 10.1645 27 6 2.7689 -2.2871 2.5029 28 7 2.3867 -2.0398 1.2762 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8932 -0.5139 -0.8899 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.9983 0.8886 2.6833 37 1 4.8382 0.1012 4.3097 38 1 4.7475 -0.6561 5.9182 39 1 5.0072 -1.6631 4.4740 40 1 2.5867 -2.9948 5.0330 41 1 -1.1452 -1.9774 7.6925 42 1 -1.3983 -1.0934 6.1685 43 1 -0.5685 -2.6681 6.1568 44 1 0.0923 2.0968 5.7863 45 1 0.6444 0.6816 4.8589 46 1 -0.9811 0.6909 5.5842 47 1 0.2520 4.0200 7.9263 48 1 3.1118 -3.2395 2.8794 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000554700178.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:51 Heat of formation + Delta-G solvation = -25.123172 kcal Electronic energy + Delta-G solvation = -30175.437854 eV Core-core repulsion = 26200.142649 eV Total energy + Delta-G solvation = -3975.295205 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.25770 -38.39110 -37.86623 -37.54788 -36.81790 -36.14951 -34.48390 -31.68340 -30.99671 -30.85803 -29.43202 -28.18102 -27.24943 -26.98332 -24.53229 -23.52762 -22.53922 -21.18120 -21.01670 -20.07298 -18.92098 -18.46338 -18.17773 -17.88449 -16.99175 -16.54445 -16.23000 -15.84812 -15.69247 -15.21517 -15.19749 -14.81599 -14.75212 -14.51064 -14.34148 -13.85996 -13.70438 -13.64737 -13.33291 -13.31244 -13.15035 -13.13874 -13.10631 -13.02209 -12.96221 -12.79597 -12.56724 -12.49758 -12.42247 -12.29659 -12.17012 -12.11220 -11.95732 -11.84819 -11.39038 -11.10986 -10.59504 -10.43500 -10.31300 -9.64499 -9.31230 -8.08357 -6.20155 -0.27105 0.97812 1.43548 1.46433 1.54437 1.60911 1.80060 2.16830 2.46248 2.70011 3.20216 3.45273 3.54790 3.88825 3.95128 4.00599 4.09880 4.13336 4.21046 4.28236 4.46622 4.51026 4.64297 4.66509 4.70862 4.82209 4.83549 4.85859 4.91126 4.94255 5.04529 5.06834 5.08310 5.17317 5.19580 5.20987 5.23773 5.38304 5.43358 5.65779 5.71322 5.76621 5.93404 6.15668 6.16849 6.26037 6.36489 6.78762 6.86334 7.48087 8.95540 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.010812 B = 0.004212 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.208352 B = 6646.823181 C = 8099.279997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.149 3.851 3 C -0.161 4.161 4 N -0.364 5.364 5 C 0.070 3.930 6 C -0.246 4.246 7 C 0.232 3.768 8 H 0.076 0.924 9 C -0.161 4.161 10 N -1.106 6.106 11 S 2.794 3.206 12 O -1.014 7.014 13 O -1.009 7.009 14 N -0.997 5.997 15 C 0.107 3.893 16 C 0.273 3.727 17 H 0.030 0.970 18 C -0.134 4.134 19 C -0.538 4.538 20 H 0.052 0.948 21 C 0.023 3.977 22 N -0.909 5.909 23 Si 0.949 3.051 24 H -0.283 1.283 25 H -0.278 1.278 26 H -0.270 1.270 27 C 0.055 3.945 28 N -0.323 5.323 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.062 0.938 34 H 0.104 0.896 35 H 0.067 0.933 36 H 0.186 0.814 37 H 0.076 0.924 38 H 0.049 0.951 39 H 0.074 0.926 40 H 0.421 0.579 41 H 0.039 0.961 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.040 0.960 46 H 0.036 0.964 47 H 0.264 0.736 48 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.707 -4.531 -18.060 18.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.048 3.952 3 C -0.219 4.219 4 N -0.147 5.147 5 C -0.078 4.078 6 C -0.259 4.259 7 C 0.124 3.876 8 H 0.094 0.906 9 C -0.220 4.220 10 N -0.868 5.868 11 S 2.803 3.197 12 O -0.998 6.998 13 O -0.993 6.993 14 N -0.839 5.839 15 C -0.038 4.038 16 C 0.169 3.831 17 H 0.048 0.952 18 C -0.193 4.193 19 C -0.578 4.578 20 H 0.070 0.930 21 C -0.178 4.178 22 N -0.548 5.548 23 Si 0.775 3.225 24 H -0.210 1.210 25 H -0.203 1.203 26 H -0.195 1.195 27 C -0.131 4.131 28 N -0.144 5.144 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.119 0.881 32 H 0.124 0.876 33 H 0.081 0.919 34 H 0.123 0.877 35 H 0.086 0.914 36 H 0.203 0.797 37 H 0.095 0.905 38 H 0.068 0.932 39 H 0.093 0.907 40 H 0.257 0.743 41 H 0.058 0.942 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.059 0.941 46 H 0.055 0.945 47 H 0.074 0.926 48 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 2.881 -4.936 -18.509 19.371 hybrid contribution -0.556 0.519 1.493 1.675 sum 2.325 -4.417 -17.016 17.733 Atomic orbital electron populations 1.22221 0.93080 1.02515 1.04059 1.21553 0.95240 0.93596 0.84790 1.22209 1.02006 0.92807 1.04919 1.49048 1.49827 1.06848 1.08973 1.22493 0.99305 1.00441 0.85546 1.19971 1.15125 0.94618 0.96165 1.18857 0.95232 0.86467 0.87040 0.90631 1.22258 0.94419 1.03289 1.02004 1.55803 1.80089 1.15913 1.35018 1.01309 0.72991 0.71658 0.73738 1.93510 1.84079 1.40911 1.81332 1.93554 1.62425 1.71053 1.72240 1.57586 1.20683 1.17460 1.88183 1.21260 0.85445 0.96275 1.00870 1.18436 0.96438 0.73752 0.94475 0.95189 1.21933 0.98966 1.02740 0.95658 1.21645 1.31300 0.92251 1.12619 0.93012 1.25525 0.96668 0.96740 0.98827 1.69942 1.43708 1.01799 1.39360 0.85701 0.79073 0.77750 0.79957 1.20969 1.20331 1.19506 1.23899 0.99140 0.99724 0.90311 1.77268 1.21789 0.94459 1.20907 0.93194 0.92471 0.88051 0.87644 0.91871 0.87723 0.91445 0.79725 0.90546 0.93154 0.90725 0.74310 0.94191 0.90553 0.90698 0.91170 0.94115 0.94466 0.92647 0.78600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.52 71.98 0.69 -1.56 16 2 C 0.15 2.23 3.93 44.99 0.18 2.41 16 3 C -0.16 -1.78 8.84 71.98 0.64 -1.15 16 4 N -0.36 -7.88 3.53 -327.49 -1.15 -9.03 16 5 C 0.07 1.59 10.50 83.54 0.88 2.47 16 6 C -0.25 -6.00 5.09 -20.14 -0.10 -6.10 16 7 C 0.23 6.46 3.23 44.24 0.14 6.60 16 8 H 0.08 2.44 5.49 -2.39 -0.01 2.43 16 9 C -0.16 -4.15 9.50 71.98 0.68 -3.47 16 10 N -1.11 -31.76 5.51 -172.53 -0.95 -32.71 16 11 S 2.79 108.51 6.00 -56.49 -0.34 108.17 16 12 O -1.01 -41.83 17.21 -128.00 -2.20 -44.03 16 13 O -1.01 -46.95 15.96 -128.00 -2.04 -49.00 16 14 N -1.00 -40.66 3.12 -520.45 -1.62 -42.28 16 15 C 0.11 3.78 9.53 127.77 1.22 5.00 16 16 C 0.27 12.96 1.91 44.25 0.08 13.04 16 17 H 0.03 1.61 6.74 -2.39 -0.02 1.59 16 18 C -0.13 -5.62 8.83 71.98 0.64 -4.99 16 19 C -0.54 -28.77 8.37 25.60 0.21 -28.55 16 20 H 0.05 2.80 7.65 -2.91 -0.02 2.77 16 21 C 0.02 1.20 5.30 84.65 0.45 1.65 16 22 N -0.91 -49.23 11.32 21.45 0.24 -48.99 16 23 Si 0.95 42.79 29.54 68.60 2.03 44.82 16 24 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 25 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 26 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 27 C 0.06 1.27 11.28 85.23 0.96 2.23 16 28 N -0.32 -8.07 12.58 -57.02 -0.72 -8.79 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 35 H 0.07 0.81 7.16 -2.39 -0.02 0.79 16 36 H 0.19 3.66 7.26 -2.91 -0.02 3.64 16 37 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.05 1.53 7.64 -2.38 -0.02 1.51 16 39 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.42 9.65 7.88 -96.75 -0.76 8.89 16 41 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.08 2.57 6.43 -2.39 -0.02 2.56 16 43 H 0.07 2.21 7.79 -2.39 -0.02 2.19 16 44 H 0.07 3.31 6.07 -2.38 -0.01 3.29 16 45 H 0.04 1.44 6.74 -2.39 -0.02 1.42 16 46 H 0.04 1.50 6.66 -2.39 -0.02 1.48 16 47 H 0.26 13.62 8.31 -92.71 -0.77 12.85 16 48 H 0.20 3.46 7.68 -2.91 -0.02 3.44 16 Total: -1.00 -70.05 394.70 0.10 -69.95 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: 0.20 Total: 24.31 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: 6.66 Total: -12.42 kcal Atomic # 7 Polarization: -137.60 SS G_CDS: -4.20 Total: -141.80 kcal Atomic # 8 Polarization: -88.78 SS G_CDS: -4.25 Total: -93.03 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 16 Polarization: 108.51 SS G_CDS: -0.34 Total: 108.17 kcal Total: -70.05 0.10 -69.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554700178.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.826 kcal (2) G-P(sol) polarization free energy of solvation -70.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds