Wall clock time and date at job start Wed Apr 1 2020 03:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46716 * 2 1 4 4 N 1.46499 * 109.47308 * 119.99820 * 2 1 3 5 5 C 1.34947 * 126.03656 * 275.26752 * 4 2 1 6 6 C 1.35323 * 107.74295 * 180.14279 * 5 4 2 7 7 C 1.50703 * 126.03605 * 179.86718 * 6 5 4 8 8 H 1.08996 * 109.47370 * 339.71875 * 7 6 5 9 9 C 1.52999 * 109.46826 * 99.71996 * 7 6 5 10 10 N 1.46493 * 109.47048 * 219.71419 * 7 6 5 11 11 S 1.65608 * 119.99916 * 145.00334 * 10 7 6 12 12 O 1.42093 * 106.40109 * 178.26884 * 11 10 7 13 13 O 1.42107 * 106.40103 * 311.18868 * 11 10 7 14 14 N 1.65596 * 107.21615 * 64.72375 * 11 10 7 15 15 C 1.46497 * 120.00628 * 270.00019 * 14 11 10 16 16 C 1.46506 * 119.99933 * 90.00209 * 14 11 10 17 17 H 1.09007 * 109.46897 * 0.02562 * 16 14 11 18 18 C 1.52996 * 109.47463 * 240.00259 * 16 14 11 19 19 C 1.50701 * 109.47186 * 119.99500 * 16 14 11 20 20 H 1.08003 * 119.99747 * 0.02562 * 19 16 14 21 21 C 1.37875 * 119.99737 * 180.02562 * 19 16 14 22 22 N 1.31512 * 120.00665 * 0.02562 * 21 19 16 23 23 Si 1.86806 * 119.99495 * 180.02562 * 21 19 16 24 24 H 1.48498 * 109.47460 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.46957 * 120.00131 * 23 21 19 26 26 H 1.48499 * 109.46705 * 239.99671 * 23 21 19 27 27 C 1.39867 * 107.92049 * 359.61218 * 6 5 4 28 28 N 1.30835 * 108.19989 * 0.23383 * 27 6 5 29 29 H 1.08998 * 109.47550 * 299.99929 * 1 2 3 30 30 H 1.09003 * 109.47278 * 60.00169 * 1 2 3 31 31 H 1.09003 * 109.46659 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47097 * 240.00079 * 2 1 3 33 33 H 1.08998 * 109.47053 * 59.99766 * 3 2 1 34 34 H 1.09003 * 109.46666 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.47109 * 299.99934 * 3 2 1 36 36 H 1.08003 * 126.13171 * 359.97438 * 5 4 2 37 37 H 1.09002 * 109.47269 * 59.99351 * 9 7 6 38 38 H 1.09000 * 109.47519 * 179.97438 * 9 7 6 39 39 H 1.09003 * 109.47054 * 299.99590 * 9 7 6 40 40 H 0.97000 * 120.00740 * 324.72996 * 10 7 6 41 41 H 1.09000 * 109.47287 * 89.99789 * 15 14 11 42 42 H 1.08999 * 109.47811 * 210.00227 * 15 14 11 43 43 H 1.08997 * 109.46878 * 330.00582 * 15 14 11 44 44 H 1.09000 * 109.47269 * 179.97438 * 18 16 14 45 45 H 1.09010 * 109.46712 * 299.99543 * 18 16 14 46 46 H 1.08997 * 109.47183 * 59.99140 * 18 16 14 47 47 H 0.96998 * 120.00758 * 180.02562 * 22 21 19 48 48 H 1.08001 * 125.89760 * 180.26870 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1886 -0.1404 2.4166 6 6 2.6567 -1.1051 3.2422 7 6 2.9925 -0.9368 4.7016 8 1 3.1516 0.1195 4.9184 9 6 1.8373 -1.4643 5.5548 10 7 4.2113 -1.6879 5.0120 11 16 5.2862 -1.0986 6.1255 12 8 6.3250 -2.0625 6.2296 13 8 5.5183 0.2600 5.7792 14 7 4.5147 -1.0823 7.5906 15 6 3.7639 0.1036 8.0101 16 6 4.5829 -2.2540 8.4675 17 1 5.1807 -3.0306 7.9903 18 6 3.1701 -2.7824 8.7235 19 6 5.2188 -1.8650 9.7772 20 1 5.5397 -0.8467 9.9403 21 6 5.3910 -2.8091 10.7671 22 7 5.0007 -4.0492 10.5684 23 14 6.1786 -2.3267 12.3909 24 1 6.5268 -0.8834 12.3627 25 1 5.2250 -2.5848 13.4996 26 1 7.4107 -3.1286 12.6009 27 6 2.7682 -2.2872 2.5030 28 7 2.3857 -2.0399 1.2765 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.9897 0.8865 2.6856 37 1 1.6782 -2.5206 5.3379 38 1 2.0802 -1.3430 6.6105 39 1 0.9304 -0.9054 5.3239 40 1 4.3869 -2.5324 4.5683 41 1 2.7311 0.0181 7.6725 42 1 3.7856 0.1818 9.0971 43 1 4.2165 0.9936 7.5728 44 1 3.2209 -3.6545 9.3755 45 1 2.5726 -2.0057 9.2009 46 1 2.7102 -3.0637 7.7762 47 1 5.1215 -4.7133 11.2650 48 1 3.1103 -3.2398 2.8799 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000554700179.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:55 Heat of formation + Delta-G solvation = -25.637702 kcal Electronic energy + Delta-G solvation = -29499.507362 eV Core-core repulsion = 25524.189845 eV Total energy + Delta-G solvation = -3975.317517 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.27257 -38.32432 -37.96716 -37.48265 -36.82640 -36.15765 -34.47038 -31.66500 -31.00501 -30.84104 -29.44369 -28.17689 -27.18165 -26.90216 -24.51402 -23.52489 -22.53419 -21.19527 -21.02196 -20.02973 -18.81390 -18.55598 -18.35323 -17.68242 -17.00922 -16.51540 -16.23646 -15.90396 -15.72155 -15.14552 -15.08977 -14.95190 -14.80682 -14.43824 -14.15716 -13.84326 -13.78030 -13.62564 -13.40603 -13.30886 -13.18315 -13.11387 -13.05644 -12.99696 -12.93157 -12.68590 -12.56519 -12.43687 -12.35228 -12.31060 -12.14838 -12.06407 -11.96281 -11.84694 -11.39290 -11.08573 -10.53105 -10.45797 -10.33898 -9.58943 -9.31575 -8.07614 -6.20319 -0.24986 0.97186 1.42986 1.46357 1.56314 1.60625 1.79090 2.16469 2.46466 2.72492 3.20939 3.44700 3.57472 3.88845 3.94049 3.98629 4.11483 4.14162 4.24119 4.32336 4.48177 4.53978 4.66248 4.68750 4.78753 4.81687 4.83922 4.84232 4.92654 4.96366 5.06073 5.09317 5.15262 5.19193 5.23681 5.24412 5.33978 5.42580 5.55381 5.67224 5.69182 5.77589 5.94929 6.13461 6.18096 6.27916 6.36859 6.76430 6.88119 7.48266 8.96455 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.025430 B = 0.002716 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.799715 B =10305.437998 C =10501.712109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.146 3.854 3 C -0.161 4.161 4 N -0.366 5.366 5 C 0.072 3.928 6 C -0.250 4.250 7 C 0.232 3.768 8 H 0.095 0.905 9 C -0.168 4.168 10 N -1.112 6.112 11 S 2.796 3.204 12 O -1.022 7.022 13 O -1.010 7.010 14 N -0.992 5.992 15 C 0.087 3.913 16 C 0.276 3.724 17 H 0.022 0.978 18 C -0.132 4.132 19 C -0.535 4.535 20 H 0.058 0.942 21 C 0.017 3.983 22 N -0.914 5.914 23 Si 0.953 3.047 24 H -0.269 1.269 25 H -0.275 1.275 26 H -0.287 1.287 27 C 0.048 3.952 28 N -0.330 5.330 29 H 0.066 0.934 30 H 0.100 0.900 31 H 0.046 0.954 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.055 0.945 35 H 0.104 0.896 36 H 0.203 0.797 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.417 0.583 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.061 0.939 45 H 0.042 0.958 46 H 0.039 0.961 47 H 0.263 0.737 48 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.243 10.775 -19.215 25.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.045 3.955 3 C -0.219 4.219 4 N -0.149 5.149 5 C -0.076 4.076 6 C -0.264 4.264 7 C 0.124 3.876 8 H 0.113 0.887 9 C -0.226 4.226 10 N -0.874 5.874 11 S 2.806 3.194 12 O -1.006 7.006 13 O -0.993 6.993 14 N -0.834 5.834 15 C -0.058 4.058 16 C 0.172 3.828 17 H 0.040 0.960 18 C -0.192 4.192 19 C -0.574 4.574 20 H 0.076 0.924 21 C -0.183 4.183 22 N -0.553 5.553 23 Si 0.779 3.221 24 H -0.194 1.194 25 H -0.201 1.201 26 H -0.213 1.213 27 C -0.138 4.138 28 N -0.151 5.151 29 H 0.085 0.915 30 H 0.119 0.881 31 H 0.066 0.934 32 H 0.115 0.885 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.123 0.877 36 H 0.220 0.780 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.252 0.748 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.080 0.920 45 H 0.061 0.939 46 H 0.058 0.942 47 H 0.072 0.928 48 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -12.611 10.677 -20.539 26.360 hybrid contribution 0.626 -0.608 1.749 1.954 sum -11.984 10.069 -18.790 24.456 Atomic orbital electron populations 1.22200 0.92421 1.02515 1.04420 1.21588 0.95699 0.93592 0.84602 1.22213 1.01682 0.92663 1.05307 1.49100 1.49825 1.06808 1.09126 1.22644 0.99610 1.00470 0.84855 1.20088 1.15083 0.94289 0.96906 1.18961 0.83236 0.95455 0.89936 0.88707 1.22432 0.97988 1.02275 0.99946 1.55892 1.37257 1.35738 1.58483 1.01156 0.73118 0.72317 0.72857 1.93544 1.56194 1.63848 1.87011 1.93494 1.85077 1.36823 1.83908 1.57477 1.68908 1.23665 1.33377 1.21586 0.95972 0.85672 1.02615 1.18355 0.94440 0.81820 0.88230 0.96011 1.21912 0.96277 1.01355 0.99660 1.21716 1.39615 0.96181 0.99927 0.92421 1.25614 0.96057 0.94947 1.01678 1.69985 1.47898 1.02642 1.34807 0.85584 0.78109 0.78349 0.80017 1.19375 1.20091 1.21304 1.23884 0.99220 0.99949 0.90702 1.77288 1.22101 0.94890 1.20819 0.91475 0.88138 0.93443 0.88459 0.90463 0.92621 0.87696 0.78049 0.92296 0.91667 0.89832 0.74779 0.90837 0.91046 0.90983 0.91979 0.93870 0.94160 0.92785 0.79562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.52 71.98 0.69 -0.75 16 2 C 0.15 1.76 3.93 45.00 0.18 1.94 16 3 C -0.16 -1.20 8.84 71.98 0.64 -0.56 16 4 N -0.37 -7.02 3.52 -327.47 -1.15 -8.18 16 5 C 0.07 1.31 10.50 83.54 0.88 2.19 16 6 C -0.25 -5.51 5.09 -20.14 -0.10 -5.62 16 7 C 0.23 5.41 3.36 44.25 0.15 5.56 16 8 H 0.09 2.13 7.51 -2.39 -0.02 2.11 16 9 C -0.17 -3.60 9.48 71.98 0.68 -2.91 16 10 N -1.11 -32.14 5.51 -172.53 -0.95 -33.09 16 11 S 2.80 108.11 6.12 -56.49 -0.35 107.77 16 12 O -1.02 -49.06 16.70 -128.00 -2.14 -51.19 16 13 O -1.01 -40.54 16.09 -128.00 -2.06 -42.60 16 14 N -0.99 -39.27 2.78 -520.44 -1.45 -40.72 16 15 C 0.09 2.81 9.41 127.77 1.20 4.01 16 16 C 0.28 13.29 2.62 44.24 0.12 13.41 16 17 H 0.02 1.22 6.91 -2.38 -0.02 1.20 16 18 C -0.13 -5.75 8.66 71.98 0.62 -5.13 16 19 C -0.53 -28.64 7.99 25.60 0.20 -28.43 16 20 H 0.06 3.07 7.33 -2.91 -0.02 3.05 16 21 C 0.02 0.90 5.30 84.65 0.45 1.35 16 22 N -0.91 -51.31 11.32 21.45 0.24 -51.07 16 23 Si 0.95 43.31 29.54 68.60 2.03 45.33 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 25 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 26 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 27 C 0.05 1.14 11.29 85.24 0.96 2.10 16 28 N -0.33 -8.23 12.57 -57.03 -0.72 -8.95 16 29 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.08 0.45 7.16 -2.39 -0.02 0.43 16 34 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 36 H 0.20 2.24 7.27 -2.91 -0.02 2.22 16 37 H 0.06 1.30 8.14 -2.39 -0.02 1.29 16 38 H 0.06 1.57 4.44 -2.39 -0.01 1.56 16 39 H 0.08 1.41 8.14 -2.39 -0.02 1.40 16 40 H 0.42 11.03 7.89 -96.75 -0.76 10.27 16 41 H 0.07 1.87 6.24 -2.39 -0.01 1.85 16 42 H 0.07 2.48 7.02 -2.39 -0.02 2.47 16 43 H 0.07 2.18 7.02 -2.39 -0.02 2.16 16 44 H 0.06 3.09 6.07 -2.39 -0.01 3.07 16 45 H 0.04 1.74 7.67 -2.38 -0.02 1.72 16 46 H 0.04 1.49 7.36 -2.39 -0.02 1.47 16 47 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 48 H 0.19 3.85 7.68 -2.91 -0.02 3.83 16 Total: -1.00 -73.82 392.48 0.32 -73.50 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: 0.21 Total: 22.05 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: 6.66 Total: -12.85 kcal Atomic # 7 Polarization: -137.98 SS G_CDS: -4.03 Total: -142.00 kcal Atomic # 8 Polarization: -89.59 SS G_CDS: -4.20 Total: -93.79 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 16 Polarization: 108.11 SS G_CDS: -0.35 Total: 107.77 kcal Total: -73.82 0.32 -73.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554700179.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.863 kcal (2) G-P(sol) polarization free energy of solvation -73.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds