Wall clock time and date at job start Wed Apr 1 2020 03:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46899 * 110.99723 * 2 1 4 4 C 1.50695 * 109.47218 * 293.95186 * 3 2 1 5 5 H 1.08005 * 120.00352 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00111 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00142 * 180.02562 * 6 4 3 8 8 Si 1.86799 * 119.99913 * 0.02562 * 6 4 3 9 9 H 1.48488 * 109.47222 * 89.99977 * 8 6 4 10 10 H 1.48502 * 109.46822 * 209.99910 * 8 6 4 11 11 H 1.48495 * 109.47119 * 329.99786 * 8 6 4 12 12 C 1.46895 * 110.99796 * 123.95024 * 2 1 3 13 13 C 1.53000 * 109.47047 * 164.01047 * 12 2 1 14 14 H 1.09001 * 109.47270 * 58.50983 * 13 12 2 15 15 O 1.42901 * 109.47110 * 298.51384 * 13 12 2 16 16 C 1.52997 * 109.47151 * 178.51129 * 13 12 2 17 17 N 1.46908 * 109.46865 * 185.00345 * 16 13 12 18 18 C 1.46898 * 110.99836 * 180.02562 * 17 16 13 19 19 C 1.50708 * 109.47060 * 179.97438 * 18 17 16 20 20 C 1.38265 * 119.93960 * 89.99795 * 19 18 17 21 21 C 1.38144 * 120.04758 * 179.97438 * 20 19 18 22 22 C 1.38734 * 119.95211 * 0.02562 * 21 20 19 23 23 O 1.35892 * 120.05774 * 180.02562 * 22 21 20 24 24 C 1.42903 * 116.99766 * 179.97438 * 23 22 21 25 25 F 1.39900 * 109.47046 * 299.99764 * 24 23 22 26 26 F 1.39907 * 109.47002 * 59.99893 * 24 23 22 27 27 C 1.38731 * 119.88198 * 0.27123 * 22 21 20 28 28 C 1.38146 * 119.94621 * 359.47331 * 27 22 21 29 29 H 1.09008 * 109.47159 * 301.53192 * 1 2 3 30 30 H 1.09001 * 109.47204 * 61.52891 * 1 2 3 31 31 H 1.09002 * 109.47313 * 181.53128 * 1 2 3 32 32 H 1.08994 * 109.47383 * 53.95168 * 3 2 1 33 33 H 1.09003 * 109.47238 * 173.95312 * 3 2 1 34 34 H 0.96997 * 120.00030 * 180.02562 * 7 6 4 35 35 H 1.09001 * 109.47299 * 44.01565 * 12 2 1 36 36 H 1.08997 * 109.47634 * 284.01318 * 12 2 1 37 37 H 0.96702 * 113.99721 * 299.99598 * 15 13 12 38 38 H 1.08996 * 109.47489 * 65.00671 * 16 13 12 39 39 H 1.08996 * 109.47283 * 304.99642 * 16 13 12 40 40 H 1.00905 * 110.99728 * 303.94821 * 17 16 13 41 41 H 1.09005 * 109.47712 * 59.99722 * 18 17 16 42 42 H 1.08999 * 109.47100 * 299.99771 * 18 17 16 43 43 H 1.07997 * 119.97830 * 359.97438 * 20 19 18 44 44 H 1.08008 * 120.02515 * 179.97438 * 21 20 19 45 45 H 1.08998 * 109.47488 * 179.97438 * 24 23 22 46 46 H 1.07996 * 120.02946 * 179.71780 * 27 22 21 47 47 H 1.08000 * 119.97692 * 180.22194 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0739 1.5115 -2.0485 6 6 2.0276 3.3491 -1.5289 7 7 1.7143 3.9390 -2.6618 8 14 3.0019 4.2754 -0.2319 9 1 4.4540 4.0618 -0.4573 10 1 2.6947 5.7254 -0.3238 11 1 2.6315 3.7754 1.1164 12 6 1.9954 -0.7659 1.1376 13 6 3.4727 -1.0839 0.8985 14 1 4.0282 -0.1549 0.7698 15 8 3.6033 -1.8838 -0.2785 16 6 4.0306 -1.8494 2.0999 17 7 5.4754 -2.0500 1.9248 18 6 6.0466 -2.7841 3.0618 19 6 7.5265 -2.9709 2.8467 20 6 8.4167 -2.0201 3.3105 21 6 9.7737 -2.1894 3.1150 22 6 10.2430 -3.3143 2.4524 23 8 11.5775 -3.4832 2.2594 24 6 11.9887 -4.6654 1.5697 25 9 11.5664 -5.7922 2.2833 26 9 11.4189 -4.6819 0.2920 27 6 9.3472 -4.2638 1.9827 28 6 7.9915 -4.0925 2.1853 29 1 -0.3634 0.5375 0.8760 30 1 -0.3634 0.4899 -0.9034 31 1 -0.3634 -1.0273 0.0275 32 1 1.5610 1.9274 0.8308 33 1 3.0797 1.3445 0.1083 34 1 1.9895 4.8548 -2.8241 35 1 1.4356 -1.6956 1.2399 36 1 1.8933 -0.1781 2.0498 37 1 3.1333 -2.7278 -0.2345 38 1 3.5359 -2.8177 2.1754 39 1 3.8511 -1.2776 3.0103 40 1 5.6720 -2.5218 1.0547 41 1 5.5657 -3.7589 3.1436 42 1 5.8809 -2.2191 3.9791 43 1 8.0509 -1.1443 3.8259 44 1 10.4687 -1.4462 3.4771 45 1 13.0751 -4.6761 1.4828 46 1 9.7097 -5.1381 1.4625 47 1 7.2939 -4.8332 1.8229 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000556866233.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:57 Heat of formation + Delta-G solvation = -186.085475 kcal Electronic energy + Delta-G solvation = -29418.769102 eV Core-core repulsion = 24850.360910 eV Total energy + Delta-G solvation = -4568.408192 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.33242 -48.33492 -41.05372 -39.65352 -38.81707 -37.39327 -35.92938 -34.58626 -32.37453 -32.05109 -30.75136 -29.83482 -27.85987 -26.77001 -25.50686 -24.41209 -23.92198 -22.74622 -22.28350 -21.55180 -20.03889 -19.16036 -19.05109 -18.90227 -17.69584 -17.29056 -17.07163 -16.69320 -16.49319 -16.12710 -16.06583 -15.87339 -15.63769 -15.38108 -15.17458 -14.95481 -14.88534 -14.71481 -14.66562 -14.55269 -14.42167 -14.06216 -13.92765 -13.67773 -13.25121 -13.17082 -13.04556 -12.79461 -12.70931 -12.57030 -12.39127 -12.27534 -12.20412 -11.89315 -11.86001 -11.63155 -11.43025 -10.77267 -10.76011 -10.03991 -9.49366 -9.23218 -8.94475 -8.27862 -6.30402 0.23129 0.31130 1.33459 1.35746 1.45185 1.61442 2.34241 2.54667 2.57581 3.03116 3.07767 3.48222 3.50109 3.67839 3.73493 3.77718 3.80152 3.88560 4.01141 4.18226 4.20860 4.32784 4.34503 4.43772 4.48115 4.58031 4.62546 4.66091 4.71617 4.73327 4.82671 4.91773 5.00194 5.02121 5.11974 5.19620 5.21797 5.25079 5.56043 5.56681 5.59641 5.96887 6.02396 6.09268 6.38847 6.42207 6.67325 6.75721 7.06755 7.32694 8.88993 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.014002 B = 0.001974 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.183196 B =14177.831586 C =14984.430086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.543 5.543 3 C 0.174 3.826 4 C -0.514 4.514 5 H 0.036 0.964 6 C 0.005 3.995 7 N -0.949 5.949 8 Si 0.946 3.054 9 H -0.268 1.268 10 H -0.279 1.279 11 H -0.250 1.250 12 C 0.025 3.975 13 C 0.118 3.882 14 H 0.070 0.930 15 O -0.563 6.563 16 C 0.043 3.957 17 N -0.695 5.695 18 C 0.106 3.894 19 C -0.112 4.112 20 C -0.069 4.069 21 C -0.146 4.146 22 C 0.088 3.912 23 O -0.330 6.330 24 C 0.405 3.595 25 F -0.210 7.210 26 F -0.212 7.212 27 C -0.203 4.203 28 C -0.081 4.081 29 H 0.018 0.982 30 H 0.043 0.957 31 H 0.083 0.917 32 H -0.014 1.014 33 H 0.024 0.976 34 H 0.266 0.734 35 H 0.098 0.902 36 H 0.040 0.960 37 H 0.379 0.621 38 H 0.056 0.944 39 H 0.087 0.913 40 H 0.346 0.654 41 H 0.051 0.949 42 H 0.088 0.912 43 H 0.146 0.854 44 H 0.147 0.853 45 H 0.234 0.766 46 H 0.133 0.867 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.145 -21.734 17.832 34.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.266 5.266 3 C 0.047 3.953 4 C -0.552 4.552 5 H 0.054 0.946 6 C -0.192 4.192 7 N -0.590 5.590 8 Si 0.769 3.231 9 H -0.193 1.193 10 H -0.205 1.205 11 H -0.173 1.173 12 C -0.104 4.104 13 C 0.058 3.942 14 H 0.088 0.912 15 O -0.368 6.368 16 C -0.087 4.087 17 N -0.327 5.327 18 C -0.022 4.022 19 C -0.113 4.113 20 C -0.088 4.088 21 C -0.164 4.164 22 C 0.045 3.955 23 O -0.248 6.248 24 C 0.316 3.684 25 F -0.192 7.192 26 F -0.194 7.194 27 C -0.221 4.221 28 C -0.100 4.100 29 H 0.036 0.964 30 H 0.062 0.938 31 H 0.102 0.898 32 H 0.003 0.997 33 H 0.042 0.958 34 H 0.075 0.925 35 H 0.116 0.884 36 H 0.058 0.942 37 H 0.227 0.773 38 H 0.074 0.926 39 H 0.105 0.895 40 H 0.165 0.835 41 H 0.070 0.930 42 H 0.106 0.894 43 H 0.164 0.836 44 H 0.165 0.835 45 H 0.250 0.750 46 H 0.150 0.850 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 19.941 -20.600 17.415 33.546 hybrid contribution -0.831 -0.344 0.371 0.973 sum 19.111 -20.945 17.786 33.470 Atomic orbital electron populations 1.22193 0.87333 1.01244 0.99813 1.61723 1.07962 1.14568 1.42386 1.19930 0.94957 0.86023 0.94414 1.21284 1.34627 0.97404 1.01904 0.94586 1.25869 0.97070 0.98525 0.97738 1.70052 1.48731 1.13908 1.26292 0.85735 0.79371 0.77737 0.80246 1.19294 1.20485 1.17332 1.22844 0.96658 0.99086 0.91802 1.21836 0.93753 0.93915 0.84725 0.91192 1.86672 1.75760 1.34582 1.39815 1.22514 0.87905 0.99848 0.98409 1.60395 1.12558 1.54336 1.05444 1.20847 0.89368 0.97336 0.94675 1.19930 0.96027 0.95015 1.00282 1.21129 0.91490 0.98508 0.97654 1.20702 0.96528 0.96973 1.02217 1.19095 0.81712 0.96324 0.98347 1.86602 1.22377 1.42567 1.73209 1.24272 0.99187 0.73221 0.71768 1.93073 1.92766 1.54435 1.78877 1.93085 1.88339 1.95770 1.42187 1.21597 0.94779 1.00520 1.05217 1.21069 0.94682 0.97597 0.96609 0.96364 0.93813 0.89846 0.99673 0.95800 0.92479 0.88401 0.94191 0.77315 0.92565 0.89507 0.83543 0.93041 0.89356 0.83626 0.83547 0.75000 0.84952 0.84236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.58 9.32 127.69 1.19 2.77 16 2 N -0.54 -22.28 4.60 -927.06 -4.27 -26.55 16 3 C 0.17 8.58 3.64 85.56 0.31 8.89 16 4 C -0.51 -30.84 9.09 25.60 0.23 -30.61 16 5 H 0.04 2.41 7.34 -2.91 -0.02 2.39 16 6 C 0.00 0.30 5.47 84.66 0.46 0.76 16 7 N -0.95 -61.08 13.96 21.45 0.30 -60.78 16 8 Si 0.95 45.57 27.47 68.60 1.88 47.45 16 9 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 10 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 11 H -0.25 -11.15 6.54 99.48 0.65 -10.50 16 12 C 0.02 0.73 4.63 86.30 0.40 1.13 16 13 C 0.12 3.38 3.23 30.59 0.10 3.48 16 14 H 0.07 2.57 6.55 -2.39 -0.02 2.56 16 15 O -0.56 -17.15 12.75 -148.98 -1.90 -19.05 16 16 C 0.04 0.85 5.36 86.30 0.46 1.32 16 17 N -0.70 -14.61 6.49 -517.91 -3.36 -17.97 16 18 C 0.11 1.72 5.81 85.56 0.50 2.22 16 19 C -0.11 -2.05 5.39 -19.85 -0.11 -2.16 16 20 C -0.07 -1.27 9.69 22.25 0.22 -1.05 16 21 C -0.15 -2.73 9.99 22.37 0.22 -2.50 16 22 C 0.09 1.77 6.48 22.51 0.15 1.91 16 23 O -0.33 -5.46 10.43 -92.33 -0.96 -6.43 16 24 C 0.40 4.34 5.98 113.37 0.68 5.02 16 25 F -0.21 -2.95 15.60 44.97 0.70 -2.25 16 26 F -0.21 -3.34 15.56 44.97 0.70 -2.64 16 27 C -0.20 -4.01 8.26 22.37 0.18 -3.82 16 28 C -0.08 -1.49 9.69 22.25 0.22 -1.27 16 29 H 0.02 0.64 8.13 -2.38 -0.02 0.62 16 30 H 0.04 1.92 6.90 -2.39 -0.02 1.90 16 31 H 0.08 2.45 7.97 -2.39 -0.02 2.43 16 32 H -0.01 -0.70 7.17 -2.39 -0.02 -0.72 16 33 H 0.02 1.19 5.81 -2.39 -0.01 1.18 16 34 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 35 H 0.10 2.24 7.88 -2.39 -0.02 2.22 16 36 H 0.04 1.14 8.05 -2.39 -0.02 1.12 16 37 H 0.38 8.05 9.05 -74.06 -0.67 7.38 16 38 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.35 7.78 8.28 -89.69 -0.74 7.04 16 41 H 0.05 0.69 8.08 -2.38 -0.02 0.68 16 42 H 0.09 1.30 8.08 -2.39 -0.02 1.28 16 43 H 0.15 2.24 8.06 -2.91 -0.02 2.21 16 44 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 45 H 0.23 -0.17 8.14 -2.39 -0.02 -0.19 16 46 H 0.13 2.49 5.10 -2.91 -0.01 2.48 16 47 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -78.27 390.96 -2.16 -80.43 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: -0.46 Total: 21.71 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: 5.21 Total: -13.92 kcal Atomic # 7 Polarization: -97.97 SS G_CDS: -7.33 Total: -105.30 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -2.86 Total: -25.48 kcal Atomic # 9 Polarization: -6.29 SS G_CDS: 1.40 Total: -4.88 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.88 Total: 47.45 kcal Total: -78.27 -2.16 -80.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556866233.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.656 kcal (2) G-P(sol) polarization free energy of solvation -78.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds