Wall clock time and date at job start Wed Apr 1 2020 03:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46896 * 110.99884 * 2 1 4 4 C 1.50699 * 109.47699 * 66.04791 * 3 2 1 5 5 H 1.08000 * 119.99396 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00369 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00070 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00138 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.46773 * 90.00097 * 8 6 4 10 10 H 1.48500 * 109.47273 * 209.99892 * 8 6 4 11 11 H 1.48500 * 109.47180 * 329.99995 * 8 6 4 12 12 C 1.46895 * 110.99961 * 236.03941 * 2 1 3 13 13 C 1.52992 * 109.47278 * 199.84972 * 12 2 1 14 14 H 1.08997 * 109.47841 * 300.46376 * 13 12 2 15 15 O 1.42899 * 109.47401 * 60.46704 * 13 12 2 16 16 C 1.53010 * 109.47131 * 180.46561 * 13 12 2 17 17 N 1.46907 * 109.46868 * 180.02562 * 16 13 12 18 18 C 1.46897 * 110.99514 * 179.97438 * 17 16 13 19 19 C 1.50703 * 109.46987 * 179.97438 * 18 17 16 20 20 C 1.38271 * 119.93967 * 90.00504 * 19 18 17 21 21 C 1.38147 * 120.05307 * 180.02562 * 20 19 18 22 22 C 1.38731 * 119.94370 * 359.97438 * 21 20 19 23 23 O 1.35895 * 120.05522 * 180.02562 * 22 21 20 24 24 C 1.42905 * 117.00293 * 179.97438 * 23 22 21 25 25 F 1.39900 * 109.46898 * 300.00224 * 24 23 22 26 26 F 1.39907 * 109.46606 * 60.00044 * 24 23 22 27 27 C 1.38739 * 119.89143 * 0.28151 * 22 21 20 28 28 C 1.38145 * 119.93986 * 359.46552 * 27 22 21 29 29 H 1.08998 * 109.46979 * 188.78254 * 1 2 3 30 30 H 1.09003 * 109.46468 * 308.77667 * 1 2 3 31 31 H 1.08991 * 109.47143 * 68.77768 * 1 2 3 32 32 H 1.09003 * 109.46989 * 186.04719 * 3 2 1 33 33 H 1.09004 * 109.47114 * 306.04226 * 3 2 1 34 34 H 0.96992 * 120.00372 * 180.02562 * 7 6 4 35 35 H 1.09008 * 109.46868 * 79.84969 * 12 2 1 36 36 H 1.08995 * 109.47624 * 319.85574 * 12 2 1 37 37 H 0.96700 * 113.99685 * 59.99536 * 15 13 12 38 38 H 1.08992 * 109.46834 * 60.00461 * 16 13 12 39 39 H 1.08998 * 109.46743 * 300.00033 * 16 13 12 40 40 H 1.00895 * 110.99794 * 303.95066 * 17 16 13 41 41 H 1.09004 * 109.47354 * 60.00025 * 18 17 16 42 42 H 1.08996 * 109.47929 * 300.00045 * 18 17 16 43 43 H 1.07994 * 119.97551 * 359.97101 * 20 19 18 44 44 H 1.07993 * 120.02434 * 179.97438 * 21 20 19 45 45 H 1.09000 * 109.47224 * 179.97438 * 24 23 22 46 46 H 1.07996 * 120.02748 * 179.72247 * 27 22 21 47 47 H 1.07999 * 119.97268 * 180.23022 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0472 1.2984 5 1 1.0740 1.5115 2.0484 6 6 2.0269 3.3495 1.5284 7 7 2.7120 4.0020 0.6148 8 14 1.5819 4.1874 3.1375 9 1 2.6586 3.9514 4.1327 10 1 1.4294 5.6469 2.9101 11 1 0.3041 3.6299 3.6491 12 6 1.9955 -0.7661 -1.1375 13 6 3.4448 -1.1667 -0.8555 14 1 4.0464 -0.2707 -0.7027 15 8 3.4946 -1.9798 0.3186 16 6 3.9968 -1.9547 -2.0453 17 7 5.3884 -2.3399 -1.7742 18 6 5.9522 -3.1004 -2.8974 19 6 7.3775 -3.4767 -2.5840 20 6 7.6508 -4.6694 -1.9401 21 6 8.9564 -5.0164 -1.6512 22 6 9.9937 -4.1672 -2.0082 23 8 11.2789 -4.5065 -1.7256 24 6 12.2958 -3.5844 -2.1229 25 9 12.2497 -3.4086 -3.5101 26 9 12.0836 -2.3550 -1.4897 27 6 9.7165 -2.9685 -2.6494 28 6 8.4096 -2.6286 -2.9408 29 1 -0.3633 -1.0156 0.1569 30 1 -0.3632 0.6437 0.8012 31 1 -0.3633 0.3720 -0.9579 32 1 3.0797 1.3444 -0.1083 33 1 1.5611 1.9273 -0.8310 34 1 2.9866 4.9180 0.7767 35 1 1.9566 -0.1527 -2.0378 36 1 1.3923 -1.6624 -1.2822 37 1 2.9803 -2.7961 0.2537 38 1 3.9590 -1.3345 -2.9408 39 1 3.3953 -2.8508 -2.1981 40 1 5.9534 -1.5305 -1.5653 41 1 5.9283 -2.4884 -3.7991 42 1 5.3641 -4.0042 -3.0561 43 1 6.8429 -5.3299 -1.6620 44 1 9.1692 -5.9479 -1.1480 45 1 13.2725 -3.9756 -1.8381 46 1 10.5221 -2.3038 -2.9243 47 1 8.1935 -1.6974 -3.4432 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000556866234.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:02 Heat of formation + Delta-G solvation = -161.372783 kcal Electronic energy + Delta-G solvation = -29307.167299 eV Core-core repulsion = 24739.830729 eV Total energy + Delta-G solvation = -4567.336569 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.75791 -47.74766 -40.33254 -38.42719 -37.82414 -35.87778 -34.78656 -32.45598 -31.44360 -31.26968 -29.34697 -27.34048 -26.97764 -25.76734 -24.28013 -23.26082 -23.03789 -21.64537 -21.36076 -19.99496 -19.37793 -18.57242 -18.31822 -16.72747 -16.49470 -16.36278 -15.86953 -15.53748 -15.24622 -15.05164 -14.84371 -14.63876 -14.52771 -14.32511 -14.21234 -14.15335 -14.05543 -13.78951 -13.43741 -13.36964 -13.19433 -12.94320 -12.55257 -12.34820 -12.02235 -11.95301 -11.73121 -11.49072 -11.38734 -11.15782 -11.10035 -10.87817 -10.66351 -10.58985 -10.32529 -9.73791 -9.47997 -9.26812 -9.10178 -8.67797 -8.39693 -8.35188 -7.17048 -5.99470 -3.99676 1.01076 1.08160 2.15891 3.05579 3.35707 3.36886 3.41229 3.44866 3.86219 4.15060 4.21738 4.46396 4.48088 4.55240 4.66004 4.82103 4.92402 4.99316 5.08601 5.17310 5.30816 5.35209 5.37381 5.47109 5.50783 5.65378 5.73605 5.74062 5.76664 5.87056 6.00235 6.05845 6.16080 6.28317 6.34235 6.36952 6.52136 6.74925 6.76888 6.92891 7.29946 7.32074 7.33975 7.83756 8.11790 8.21287 8.31090 8.59186 9.07704 9.64122 11.11734 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012920 B = 0.001917 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.631985 B =14602.184906 C =16033.147353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.530 5.530 3 C 0.193 3.807 4 C -0.503 4.503 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.901 5.901 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.274 1.274 12 C 0.026 3.974 13 C 0.119 3.881 14 H 0.099 0.901 15 O -0.530 6.530 16 C 0.027 3.973 17 N -0.673 5.673 18 C 0.100 3.900 19 C -0.102 4.102 20 C -0.062 4.062 21 C -0.135 4.135 22 C 0.100 3.900 23 O -0.322 6.322 24 C 0.411 3.589 25 F -0.200 7.200 26 F -0.197 7.197 27 C -0.189 4.189 28 C -0.076 4.076 29 H 0.044 0.956 30 H 0.077 0.923 31 H 0.007 0.993 32 H 0.030 0.970 33 H -0.012 1.012 34 H 0.260 0.740 35 H 0.030 0.970 36 H 0.060 0.940 37 H 0.360 0.640 38 H 0.036 0.964 39 H 0.072 0.928 40 H 0.346 0.654 41 H 0.036 0.964 42 H 0.080 0.920 43 H 0.135 0.865 44 H 0.134 0.866 45 H 0.181 0.819 46 H 0.132 0.868 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.151 -19.863 -10.835 27.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.254 5.254 3 C 0.068 3.932 4 C -0.542 4.542 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.541 5.541 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.199 1.199 12 C -0.104 4.104 13 C 0.059 3.941 14 H 0.116 0.884 15 O -0.332 6.332 16 C -0.103 4.103 17 N -0.305 5.305 18 C -0.029 4.029 19 C -0.102 4.102 20 C -0.080 4.080 21 C -0.154 4.154 22 C 0.057 3.943 23 O -0.240 6.240 24 C 0.321 3.679 25 F -0.182 7.182 26 F -0.179 7.179 27 C -0.208 4.208 28 C -0.094 4.094 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.025 0.975 32 H 0.048 0.952 33 H 0.005 0.995 34 H 0.070 0.930 35 H 0.048 0.952 36 H 0.078 0.922 37 H 0.205 0.795 38 H 0.054 0.946 39 H 0.091 0.909 40 H 0.164 0.836 41 H 0.055 0.945 42 H 0.098 0.902 43 H 0.153 0.847 44 H 0.152 0.848 45 H 0.197 0.803 46 H 0.150 0.850 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 16.643 -20.099 -9.800 27.875 hybrid contribution -0.567 1.674 -1.084 2.073 sum 16.076 -18.426 -10.884 26.766 Atomic orbital electron populations 1.22226 0.88902 0.99958 1.00002 1.62009 1.06474 1.17719 1.39232 1.19760 0.95413 0.81564 0.96500 1.21160 1.34553 0.96756 1.01695 0.91834 1.24989 0.95378 0.97381 0.96979 1.69954 1.38630 1.11457 1.34057 0.86491 0.78888 0.78294 0.83699 1.20577 1.21408 1.19880 1.22672 0.96088 0.98095 0.93521 1.21841 0.95031 0.93254 0.84014 0.88359 1.86689 1.73582 1.35628 1.37272 1.22745 0.89947 0.99545 0.98040 1.60407 1.02628 1.28631 1.38800 1.20856 0.91049 0.98796 0.92201 1.19803 0.95021 0.95177 1.00233 1.20878 0.95366 0.96172 0.95600 1.20438 0.90628 1.00329 1.03971 1.18872 0.82563 0.94860 0.97970 1.86604 1.14334 1.45905 1.77172 1.23353 0.93927 0.76811 0.73799 1.93099 1.97010 1.95312 1.32743 1.93121 1.95838 1.47034 1.81888 1.21471 0.98857 0.96714 1.03713 1.20884 0.91459 0.98941 0.98160 0.93734 0.90468 0.97473 0.95207 0.99474 0.93002 0.95188 0.92170 0.79478 0.94618 0.90920 0.83577 0.94538 0.90192 0.84725 0.84845 0.80262 0.85047 0.85546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 9.37 60.07 0.56 1.30 16 2 N -0.53 -11.55 4.56 -244.38 -1.11 -12.67 16 3 C 0.19 5.09 4.55 -4.98 -0.02 5.07 16 4 C -0.50 -14.45 8.39 -34.44 -0.29 -14.73 16 5 H 0.06 1.82 7.16 -52.49 -0.38 1.44 16 6 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 8 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 9 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 12 C 0.03 0.45 4.66 -3.83 -0.02 0.43 16 13 C 0.12 1.93 3.24 -26.73 -0.09 1.85 16 14 H 0.10 1.90 6.78 -51.93 -0.35 1.55 16 15 O -0.53 -9.19 13.08 -35.23 -0.46 -9.65 16 16 C 0.03 0.33 5.35 -3.82 -0.02 0.31 16 17 N -0.67 -8.16 6.36 -115.05 -0.73 -8.89 16 18 C 0.10 0.98 5.81 -4.98 -0.03 0.95 16 19 C -0.10 -1.05 5.39 -104.60 -0.56 -1.61 16 20 C -0.06 -0.60 9.69 -39.60 -0.38 -0.98 16 21 C -0.14 -1.32 9.99 -39.43 -0.39 -1.71 16 22 C 0.10 1.06 6.48 -39.21 -0.25 0.80 16 23 O -0.32 -2.90 10.43 -19.41 -0.20 -3.10 16 24 C 0.41 2.64 5.98 101.05 0.60 3.24 16 25 F -0.20 -1.59 15.60 2.25 0.04 -1.56 16 26 F -0.20 -1.72 15.56 2.25 0.04 -1.69 16 27 C -0.19 -2.02 8.26 -39.43 -0.33 -2.35 16 28 C -0.08 -0.79 9.69 -39.61 -0.38 -1.17 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 1.65 6.66 -51.93 -0.35 1.30 16 31 H 0.01 0.13 8.13 -51.93 -0.42 -0.29 16 32 H 0.03 0.84 6.63 -51.93 -0.34 0.49 16 33 H -0.01 -0.35 8.12 -51.93 -0.42 -0.77 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.03 0.53 8.00 -51.92 -0.42 0.11 16 36 H 0.06 0.88 7.94 -51.93 -0.41 0.47 16 37 H 0.36 4.88 9.05 45.56 0.41 5.29 16 38 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.35 4.49 8.72 -39.29 -0.34 4.14 16 41 H 0.04 0.34 8.08 -51.93 -0.42 -0.08 16 42 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 43 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 44 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 45 H 0.18 0.23 8.14 -51.93 -0.42 -0.19 16 46 H 0.13 1.34 5.10 -52.49 -0.27 1.08 16 47 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 395.54 15.07 5.96 5.96 Total: -1.00 -33.95 395.54 -8.69 -42.63 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -6.22 Total: 5.40 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -1.70 Total: -7.15 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: -1.11 Total: -47.96 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: -0.66 Total: -12.75 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.07 Total: -3.24 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.95 -8.69 -42.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556866234.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.739 kcal (2) G-P(sol) polarization free energy of solvation -33.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds