Wall clock time and date at job start Wed Apr 1 2020 03:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46896 * 110.99884 * 2 1 4 4 C 1.50699 * 109.47699 * 66.04791 * 3 2 1 5 5 H 1.08000 * 119.99396 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00369 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00070 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00138 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.46773 * 90.00097 * 8 6 4 10 10 H 1.48500 * 109.47273 * 209.99892 * 8 6 4 11 11 H 1.48500 * 109.47180 * 329.99995 * 8 6 4 12 12 C 1.46895 * 110.99961 * 236.03941 * 2 1 3 13 13 C 1.52992 * 109.47278 * 199.84972 * 12 2 1 14 14 H 1.08997 * 109.47841 * 300.46376 * 13 12 2 15 15 O 1.42899 * 109.47401 * 60.46704 * 13 12 2 16 16 C 1.53010 * 109.47131 * 180.46561 * 13 12 2 17 17 N 1.46907 * 109.46868 * 180.02562 * 16 13 12 18 18 C 1.46897 * 110.99514 * 179.97438 * 17 16 13 19 19 C 1.50703 * 109.46987 * 179.97438 * 18 17 16 20 20 C 1.38271 * 119.93967 * 90.00504 * 19 18 17 21 21 C 1.38147 * 120.05307 * 180.02562 * 20 19 18 22 22 C 1.38731 * 119.94370 * 359.97438 * 21 20 19 23 23 O 1.35895 * 120.05522 * 180.02562 * 22 21 20 24 24 C 1.42905 * 117.00293 * 179.97438 * 23 22 21 25 25 F 1.39900 * 109.46898 * 300.00224 * 24 23 22 26 26 F 1.39907 * 109.46606 * 60.00044 * 24 23 22 27 27 C 1.38739 * 119.89143 * 0.28151 * 22 21 20 28 28 C 1.38145 * 119.93986 * 359.46552 * 27 22 21 29 29 H 1.08998 * 109.46979 * 188.78254 * 1 2 3 30 30 H 1.09003 * 109.46468 * 308.77667 * 1 2 3 31 31 H 1.08991 * 109.47143 * 68.77768 * 1 2 3 32 32 H 1.09003 * 109.46989 * 186.04719 * 3 2 1 33 33 H 1.09004 * 109.47114 * 306.04226 * 3 2 1 34 34 H 0.96992 * 120.00372 * 180.02562 * 7 6 4 35 35 H 1.09008 * 109.46868 * 79.84969 * 12 2 1 36 36 H 1.08995 * 109.47624 * 319.85574 * 12 2 1 37 37 H 0.96700 * 113.99685 * 59.99536 * 15 13 12 38 38 H 1.08992 * 109.46834 * 60.00461 * 16 13 12 39 39 H 1.08998 * 109.46743 * 300.00033 * 16 13 12 40 40 H 1.00895 * 110.99794 * 303.95066 * 17 16 13 41 41 H 1.09004 * 109.47354 * 60.00025 * 18 17 16 42 42 H 1.08996 * 109.47929 * 300.00045 * 18 17 16 43 43 H 1.07994 * 119.97551 * 359.97101 * 20 19 18 44 44 H 1.07993 * 120.02434 * 179.97438 * 21 20 19 45 45 H 1.09000 * 109.47224 * 179.97438 * 24 23 22 46 46 H 1.07996 * 120.02748 * 179.72247 * 27 22 21 47 47 H 1.07999 * 119.97268 * 180.23022 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0472 1.2984 5 1 1.0740 1.5115 2.0484 6 6 2.0269 3.3495 1.5284 7 7 2.7120 4.0020 0.6148 8 14 1.5819 4.1874 3.1375 9 1 2.6586 3.9514 4.1327 10 1 1.4294 5.6469 2.9101 11 1 0.3041 3.6299 3.6491 12 6 1.9955 -0.7661 -1.1375 13 6 3.4448 -1.1667 -0.8555 14 1 4.0464 -0.2707 -0.7027 15 8 3.4946 -1.9798 0.3186 16 6 3.9968 -1.9547 -2.0453 17 7 5.3884 -2.3399 -1.7742 18 6 5.9522 -3.1004 -2.8974 19 6 7.3775 -3.4767 -2.5840 20 6 7.6508 -4.6694 -1.9401 21 6 8.9564 -5.0164 -1.6512 22 6 9.9937 -4.1672 -2.0082 23 8 11.2789 -4.5065 -1.7256 24 6 12.2958 -3.5844 -2.1229 25 9 12.2497 -3.4086 -3.5101 26 9 12.0836 -2.3550 -1.4897 27 6 9.7165 -2.9685 -2.6494 28 6 8.4096 -2.6286 -2.9408 29 1 -0.3633 -1.0156 0.1569 30 1 -0.3632 0.6437 0.8012 31 1 -0.3633 0.3720 -0.9579 32 1 3.0797 1.3444 -0.1083 33 1 1.5611 1.9273 -0.8310 34 1 2.9866 4.9180 0.7767 35 1 1.9566 -0.1527 -2.0378 36 1 1.3923 -1.6624 -1.2822 37 1 2.9803 -2.7961 0.2537 38 1 3.9590 -1.3345 -2.9408 39 1 3.3953 -2.8508 -2.1981 40 1 5.9534 -1.5305 -1.5653 41 1 5.9283 -2.4884 -3.7991 42 1 5.3641 -4.0042 -3.0561 43 1 6.8429 -5.3299 -1.6620 44 1 9.1692 -5.9479 -1.1480 45 1 13.2725 -3.9756 -1.8381 46 1 10.5221 -2.3038 -2.9243 47 1 8.1935 -1.6974 -3.4432 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000556866234.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:01 Heat of formation + Delta-G solvation = -187.919048 kcal Electronic energy + Delta-G solvation = -29308.318431 eV Core-core repulsion = 24739.830729 eV Total energy + Delta-G solvation = -4568.487702 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.33334 -48.33868 -41.04626 -39.55549 -38.79767 -37.30474 -35.92987 -34.59812 -32.35395 -32.04693 -30.58368 -29.29430 -27.85590 -26.79053 -25.65512 -24.53751 -23.92184 -22.81124 -22.29448 -21.62847 -20.03404 -19.15001 -18.90185 -18.60163 -17.73648 -17.13045 -16.96244 -16.77897 -16.55833 -16.17689 -15.94576 -15.83268 -15.59566 -15.42438 -15.04957 -15.00103 -14.90378 -14.78303 -14.66727 -14.51687 -14.16276 -13.97211 -13.92029 -13.52131 -13.18666 -13.12983 -12.95714 -12.77871 -12.66790 -12.54784 -12.51798 -12.29682 -12.22673 -12.12720 -11.88304 -11.50106 -11.31496 -10.66252 -10.60867 -10.03146 -9.49384 -9.22917 -8.92471 -8.20910 -6.30032 0.23793 0.31712 1.39538 1.42114 1.52482 1.61657 2.40073 2.55268 2.58050 3.08217 3.12615 3.48943 3.53234 3.67613 3.75212 3.78212 3.81542 3.91467 3.98580 4.16061 4.26107 4.33589 4.38548 4.48493 4.50546 4.57125 4.62832 4.67709 4.73330 4.79083 4.79855 5.00696 5.09369 5.12504 5.13923 5.23270 5.25889 5.30753 5.56453 5.60342 5.65022 5.99769 6.06362 6.09103 6.30700 6.36514 6.66815 6.86177 7.18628 7.39281 8.90282 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012920 B = 0.001917 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.631985 B =14602.184906 C =16033.147353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.543 5.543 3 C 0.210 3.790 4 C -0.522 4.522 5 H 0.061 0.939 6 C -0.001 4.001 7 N -0.936 5.936 8 Si 0.968 3.032 9 H -0.275 1.275 10 H -0.281 1.281 11 H -0.263 1.263 12 C 0.026 3.974 13 C 0.126 3.874 14 H 0.055 0.945 15 O -0.551 6.551 16 C 0.042 3.958 17 N -0.682 5.682 18 C 0.105 3.895 19 C -0.112 4.112 20 C -0.064 4.064 21 C -0.143 4.143 22 C 0.089 3.911 23 O -0.328 6.328 24 C 0.404 3.596 25 F -0.211 7.211 26 F -0.213 7.213 27 C -0.204 4.204 28 C -0.087 4.087 29 H 0.082 0.918 30 H 0.053 0.947 31 H 0.012 0.988 32 H 0.002 0.998 33 H -0.042 1.042 34 H 0.264 0.736 35 H 0.026 0.974 36 H 0.098 0.902 37 H 0.378 0.622 38 H 0.040 0.960 39 H 0.099 0.901 40 H 0.336 0.664 41 H 0.042 0.958 42 H 0.096 0.904 43 H 0.152 0.848 44 H 0.151 0.849 45 H 0.236 0.764 46 H 0.130 0.870 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.716 -21.774 -10.526 28.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.266 5.266 3 C 0.084 3.916 4 C -0.560 4.560 5 H 0.079 0.921 6 C -0.199 4.199 7 N -0.576 5.576 8 Si 0.793 3.207 9 H -0.201 1.201 10 H -0.206 1.206 11 H -0.187 1.187 12 C -0.103 4.103 13 C 0.066 3.934 14 H 0.073 0.927 15 O -0.357 6.357 16 C -0.088 4.088 17 N -0.313 5.313 18 C -0.023 4.023 19 C -0.112 4.112 20 C -0.082 4.082 21 C -0.161 4.161 22 C 0.046 3.954 23 O -0.246 6.246 24 C 0.315 3.685 25 F -0.192 7.192 26 F -0.195 7.195 27 C -0.223 4.223 28 C -0.105 4.105 29 H 0.100 0.900 30 H 0.072 0.928 31 H 0.030 0.970 32 H 0.020 0.980 33 H -0.024 1.024 34 H 0.072 0.928 35 H 0.045 0.955 36 H 0.116 0.884 37 H 0.226 0.774 38 H 0.058 0.942 39 H 0.117 0.883 40 H 0.153 0.847 41 H 0.060 0.940 42 H 0.114 0.886 43 H 0.170 0.830 44 H 0.169 0.831 45 H 0.251 0.749 46 H 0.148 0.852 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 16.194 -22.046 -9.507 28.960 hybrid contribution -0.392 2.203 -1.208 2.543 sum 15.803 -19.843 -10.714 27.537 Atomic orbital electron populations 1.22246 0.87479 1.01768 0.99415 1.61924 1.07889 1.14991 1.41839 1.19364 0.93622 0.84014 0.94640 1.21489 1.34623 0.97392 1.02491 0.92075 1.25924 0.95116 0.98127 1.00705 1.70080 1.39535 1.11888 1.36142 0.85394 0.78979 0.77286 0.79041 1.20088 1.20609 1.18701 1.22798 0.97165 0.98646 0.91661 1.21636 0.93938 0.92473 0.85381 0.92660 1.86641 1.74237 1.36716 1.38071 1.22551 0.90331 0.99988 0.95919 1.60432 1.02458 1.28305 1.40099 1.20873 0.90879 0.99082 0.91496 1.19917 0.95142 0.95510 1.00643 1.21139 0.95940 0.96160 0.94989 1.20729 0.90581 1.00921 1.03868 1.19100 0.83588 0.94883 0.97878 1.86597 1.14046 1.46723 1.77223 1.24299 0.95064 0.76070 0.73078 1.93073 1.97049 1.95339 1.33783 1.93086 1.95988 1.48275 1.82146 1.21569 0.99033 0.97198 1.04454 1.21054 0.91646 0.99392 0.98432 0.89955 0.92799 0.96953 0.97986 1.02392 0.92751 0.95544 0.88351 0.77428 0.94167 0.88322 0.84654 0.93957 0.88586 0.83015 0.83110 0.74867 0.85239 0.85006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.49 9.37 127.69 1.20 2.68 16 2 N -0.54 -23.58 4.56 -927.08 -4.22 -27.80 16 3 C 0.21 11.49 4.55 85.56 0.39 11.88 16 4 C -0.52 -30.59 8.39 25.60 0.21 -30.38 16 5 H 0.06 3.54 7.16 -2.91 -0.02 3.51 16 6 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 7 N -0.94 -57.70 13.29 21.45 0.28 -57.42 16 8 Si 0.97 45.63 29.54 68.60 2.03 47.66 16 9 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 12 C 0.03 0.88 4.66 86.30 0.40 1.28 16 13 C 0.13 4.07 3.24 30.59 0.10 4.16 16 14 H 0.06 2.26 6.78 -2.39 -0.02 2.24 16 15 O -0.55 -18.64 13.08 -148.98 -1.95 -20.59 16 16 C 0.04 0.96 5.35 86.31 0.46 1.42 16 17 N -0.68 -15.85 6.36 -517.91 -3.29 -19.14 16 18 C 0.10 1.90 5.81 85.56 0.50 2.40 16 19 C -0.11 -2.20 5.39 -19.85 -0.11 -2.31 16 20 C -0.06 -1.16 9.69 22.26 0.22 -0.94 16 21 C -0.14 -2.64 9.99 22.37 0.22 -2.42 16 22 C 0.09 1.84 6.48 22.51 0.15 1.99 16 23 O -0.33 -5.62 10.43 -92.37 -0.96 -6.58 16 24 C 0.40 4.76 5.98 113.37 0.68 5.44 16 25 F -0.21 -3.26 15.60 44.97 0.70 -2.56 16 26 F -0.21 -3.68 15.56 44.97 0.70 -2.98 16 27 C -0.20 -4.43 8.26 22.37 0.18 -4.24 16 28 C -0.09 -1.82 9.69 22.25 0.22 -1.60 16 29 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.05 2.28 6.66 -2.39 -0.02 2.26 16 31 H 0.01 0.44 8.13 -2.39 -0.02 0.42 16 32 H 0.00 0.12 6.63 -2.39 -0.02 0.11 16 33 H -0.04 -2.45 8.12 -2.38 -0.02 -2.47 16 34 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 35 H 0.03 0.91 8.00 -2.38 -0.02 0.89 16 36 H 0.10 2.55 7.94 -2.39 -0.02 2.53 16 37 H 0.38 9.36 9.05 -74.06 -0.67 8.69 16 38 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.34 8.85 8.72 -89.70 -0.78 8.07 16 41 H 0.04 0.73 8.08 -2.38 -0.02 0.71 16 42 H 0.10 1.44 8.08 -2.39 -0.02 1.42 16 43 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 44 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 45 H 0.24 0.01 8.14 -2.39 -0.02 -0.01 16 46 H 0.13 2.75 5.10 -2.91 -0.01 2.73 16 47 H 0.13 2.47 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -75.54 395.54 -1.89 -77.43 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: -0.45 Total: 22.21 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: 5.28 Total: -10.24 kcal Atomic # 7 Polarization: -97.12 SS G_CDS: -7.23 Total: -104.36 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -2.91 Total: -27.17 kcal Atomic # 9 Polarization: -6.94 SS G_CDS: 1.40 Total: -5.54 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -75.54 -1.89 -77.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556866234.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.488 kcal (2) G-P(sol) polarization free energy of solvation -75.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds