Wall clock time and date at job start Wed Apr 1 2020 03:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 110.99728 * 2 1 4 4 C 1.50699 * 109.47140 * 66.04805 * 3 2 1 5 5 H 1.08003 * 119.99962 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99861 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99892 * 180.02562 * 6 4 3 8 8 Si 1.86805 * 120.00241 * 359.97438 * 6 4 3 9 9 H 1.48499 * 109.47135 * 90.00125 * 8 6 4 10 10 H 1.48503 * 109.47215 * 210.00315 * 8 6 4 11 11 H 1.48508 * 109.46958 * 330.00276 * 8 6 4 12 12 C 1.46905 * 110.99850 * 236.04849 * 2 1 3 13 13 C 1.53000 * 109.47114 * 293.94896 * 12 2 1 14 14 H 1.09000 * 109.46550 * 60.00064 * 13 12 2 15 15 O 1.42901 * 109.46928 * 300.00575 * 13 12 2 16 16 C 1.52996 * 109.47000 * 180.02562 * 13 12 2 17 17 N 1.46899 * 109.46798 * 185.00066 * 16 13 12 18 18 C 1.46901 * 111.00076 * 179.97438 * 17 16 13 19 19 C 1.52997 * 109.47380 * 180.02562 * 18 17 16 20 20 O 1.42897 * 109.47416 * 65.00090 * 19 18 17 21 21 C 1.35942 * 117.00374 * 180.02562 * 20 19 18 22 22 C 1.38725 * 120.02287 * 180.02562 * 21 20 19 23 23 C 1.38159 * 120.01717 * 179.97438 * 22 21 20 24 24 C 1.38412 * 120.05172 * 0.02562 * 23 22 21 25 25 F 1.35103 * 119.97741 * 179.97438 * 24 23 22 26 26 C 1.38645 * 120.04132 * 359.97438 * 24 23 22 27 27 F 1.35105 * 120.00837 * 180.02562 * 26 24 23 28 28 C 1.38363 * 119.98482 * 359.72717 * 26 24 23 29 29 H 1.08996 * 109.47030 * 59.99921 * 1 2 3 30 30 H 1.08999 * 109.46702 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46890 * 299.99929 * 1 2 3 32 32 H 1.09004 * 109.47040 * 186.04743 * 3 2 1 33 33 H 1.09000 * 109.47033 * 306.04695 * 3 2 1 34 34 H 0.97002 * 119.99998 * 180.02562 * 7 6 4 35 35 H 1.08997 * 109.46807 * 53.95411 * 12 2 1 36 36 H 1.09000 * 109.46636 * 173.95277 * 12 2 1 37 37 H 0.96697 * 113.99735 * 299.99403 * 15 13 12 38 38 H 1.08995 * 109.47058 * 304.99907 * 16 13 12 39 39 H 1.08998 * 109.46953 * 65.00454 * 16 13 12 40 40 H 1.00903 * 111.00138 * 56.05087 * 17 16 13 41 41 H 1.09005 * 109.47140 * 300.00367 * 18 17 16 42 42 H 1.09001 * 109.46992 * 59.99753 * 18 17 16 43 43 H 1.09002 * 109.46949 * 184.99940 * 19 18 17 44 44 H 1.08998 * 109.47226 * 304.99930 * 19 18 17 45 45 H 1.08003 * 119.99069 * 359.97175 * 22 21 20 46 46 H 1.07997 * 119.97466 * 179.97438 * 23 22 21 47 47 H 1.08002 * 120.02431 * 180.29038 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0739 1.5115 2.0485 6 6 2.0267 3.3495 1.5284 7 7 1.7143 3.9390 2.6618 8 14 2.9998 4.2763 0.2309 9 1 2.0631 4.9799 -0.6817 10 1 3.8862 5.2680 0.8913 11 1 3.8238 3.3176 -0.5485 12 6 1.9954 -0.7660 -1.1377 13 6 1.6315 -2.2426 -0.9704 14 1 0.5472 -2.3474 -0.9323 15 8 2.2010 -2.7391 0.2426 16 6 2.1803 -3.0404 -2.1549 17 7 1.7299 -4.4352 -2.0566 18 6 2.2384 -5.2331 -3.1803 19 6 1.7491 -6.6763 -3.0438 20 8 0.3260 -6.7106 -3.1692 21 6 -0.2731 -7.9269 -3.0706 22 6 -1.6517 -8.0328 -3.1836 23 6 -2.2604 -9.2690 -3.0839 24 6 -1.4958 -10.4030 -2.8707 25 9 -2.0927 -11.6111 -2.7730 26 6 -0.1179 -10.2998 -2.7575 27 9 0.6278 -11.4071 -2.5500 28 6 0.4940 -9.0633 -2.8633 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.0797 1.3445 -0.1083 33 1 1.5610 1.9274 -0.8309 34 1 1.9882 4.8554 2.8235 35 1 1.5611 -0.3871 -2.0628 36 1 3.0797 -0.6610 -1.1757 37 1 3.1653 -2.6770 0.2786 38 1 1.8160 -2.6058 -3.0857 39 1 3.2698 -3.0086 -2.1409 40 1 0.7237 -4.4873 -2.0027 41 1 1.8742 -4.8135 -4.1181 42 1 3.3283 -5.2165 -3.1739 43 1 2.1977 -7.2876 -3.8268 44 1 2.0373 -7.0669 -2.0678 45 1 -2.2493 -7.1486 -3.3494 46 1 -3.3337 -9.3506 -3.1715 47 1 1.5678 -8.9828 -2.7799 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562983961.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:39 Heat of formation + Delta-G solvation = -138.634102 kcal Electronic energy + Delta-G solvation = -28789.249696 eV Core-core repulsion = 24222.899150 eV Total energy + Delta-G solvation = -4566.350546 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.89349 -48.95492 -40.69722 -38.49840 -37.83378 -36.14990 -35.06336 -32.47255 -31.57586 -31.23232 -29.85676 -28.77451 -27.53293 -25.82367 -24.29286 -23.28100 -23.14713 -22.11571 -21.17373 -20.12568 -19.27686 -18.03365 -17.77186 -17.01396 -16.96541 -16.83518 -16.60001 -16.37179 -15.73851 -15.37424 -15.30080 -14.98991 -14.94219 -14.70266 -14.64454 -14.59764 -14.20478 -13.85181 -13.68893 -13.55734 -12.96708 -12.69138 -12.68443 -12.44881 -12.32041 -12.05542 -11.96670 -11.71607 -11.57533 -11.29019 -11.23650 -11.01272 -10.74967 -10.70195 -10.26744 -9.92194 -9.68585 -9.54998 -9.23128 -8.72857 -8.68670 -8.58498 -7.35739 -6.05230 -4.02446 0.37067 0.48035 2.50376 2.80954 3.25968 3.30452 3.33811 3.34816 3.68481 3.76477 4.00151 4.27244 4.38774 4.40552 4.41703 4.52835 4.67841 4.72974 4.81720 4.83520 5.04249 5.13138 5.14140 5.22318 5.26463 5.28831 5.33728 5.43304 5.43997 5.51372 5.52324 5.55908 5.90778 6.04376 6.08144 6.19529 6.28942 6.62291 6.68265 6.70781 6.81807 6.97718 7.08332 7.58178 7.88464 7.98204 8.11997 8.65932 9.04682 9.56188 11.07983 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.026693 B = 0.001500 C = 0.001468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.706608 B =18662.438951 C =19063.757289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.519 5.519 3 C 0.162 3.838 4 C -0.508 4.508 5 H 0.082 0.918 6 C 0.067 3.933 7 N -0.900 5.900 8 Si 0.876 3.124 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.268 1.268 12 C 0.021 3.979 13 C 0.117 3.883 14 H 0.093 0.907 15 O -0.534 6.534 16 C 0.026 3.974 17 N -0.678 5.678 18 C 0.061 3.939 19 C 0.055 3.945 20 O -0.304 6.304 21 C 0.160 3.840 22 C -0.133 4.133 23 C -0.083 4.083 24 C 0.025 3.975 25 F -0.131 7.131 26 C 0.110 3.890 27 F -0.125 7.125 28 C -0.222 4.222 29 H 0.009 0.991 30 H 0.049 0.951 31 H 0.079 0.921 32 H 0.027 0.973 33 H -0.018 1.018 34 H 0.263 0.737 35 H 0.027 0.973 36 H 0.070 0.930 37 H 0.369 0.631 38 H 0.037 0.963 39 H 0.076 0.924 40 H 0.349 0.651 41 H 0.041 0.959 42 H 0.094 0.906 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.150 0.850 46 H 0.154 0.846 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.839 -27.731 -17.526 32.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.242 5.242 3 C 0.036 3.964 4 C -0.546 4.546 5 H 0.100 0.900 6 C -0.134 4.134 7 N -0.539 5.539 8 Si 0.703 3.297 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.193 1.193 12 C -0.109 4.109 13 C 0.057 3.943 14 H 0.111 0.889 15 O -0.337 6.337 16 C -0.104 4.104 17 N -0.310 5.310 18 C -0.068 4.068 19 C -0.020 4.020 20 O -0.217 6.217 21 C 0.114 3.886 22 C -0.152 4.152 23 C -0.102 4.102 24 C 0.004 3.996 25 F -0.109 7.109 26 C 0.090 3.910 27 F -0.104 7.104 28 C -0.241 4.241 29 H 0.028 0.972 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.045 0.955 33 H -0.001 1.001 34 H 0.073 0.927 35 H 0.045 0.955 36 H 0.089 0.911 37 H 0.215 0.785 38 H 0.055 0.945 39 H 0.095 0.905 40 H 0.168 0.832 41 H 0.059 0.941 42 H 0.112 0.888 43 H 0.088 0.912 44 H 0.098 0.902 45 H 0.168 0.832 46 H 0.172 0.828 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.837 -27.968 -16.442 32.567 hybrid contribution 0.580 0.948 -2.275 2.531 sum -2.256 -27.021 -18.717 32.947 Atomic orbital electron populations 1.22278 0.88317 0.99586 1.01044 1.61859 1.07326 1.15963 1.39071 1.20214 0.95075 0.84126 0.97015 1.21043 1.35492 0.97150 1.00933 0.90027 1.24908 0.95809 0.97368 0.95317 1.69894 1.46932 1.13206 1.23861 0.86859 0.80613 0.80029 0.82160 1.20440 1.21119 1.19329 1.22781 1.00511 0.94326 0.93296 1.21841 0.98336 0.90477 0.83665 0.88888 1.86615 1.24889 1.84864 1.37338 1.22747 1.01149 0.88180 0.98313 1.60418 1.17356 1.10436 1.42819 1.22014 1.00610 0.90928 0.93284 1.23093 0.77700 0.98757 1.02438 1.86103 1.23082 1.26150 1.86409 1.18685 0.92056 0.83959 0.93945 1.20410 0.91658 0.98361 1.04765 1.20907 1.01043 0.89857 0.98392 1.17557 0.89324 0.82226 1.10473 1.91529 1.83456 1.41802 1.94153 1.17359 0.87452 0.83497 1.02699 1.91551 1.76048 1.50664 1.92104 1.21135 1.01922 0.90579 1.10488 0.97250 0.93183 0.90207 0.95546 1.00086 0.92675 0.95459 0.91142 0.78523 0.94499 0.90538 0.83228 0.94116 0.88751 0.91164 0.90247 0.83209 0.82843 0.83105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 9.16 60.06 0.55 1.24 16 2 N -0.52 -10.71 4.62 -244.36 -1.13 -11.84 16 3 C 0.16 3.91 3.79 -4.97 -0.02 3.89 16 4 C -0.51 -14.49 9.07 -34.44 -0.31 -14.81 16 5 H 0.08 2.55 7.35 -52.48 -0.39 2.17 16 6 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 7 N -0.90 -27.60 13.96 55.43 0.77 -26.83 16 8 Si 0.88 21.39 27.47 -169.99 -4.67 16.72 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 12 C 0.02 0.33 4.62 -3.82 -0.02 0.31 16 13 C 0.12 1.53 3.02 -26.73 -0.08 1.45 16 14 H 0.09 1.27 6.47 -51.93 -0.34 0.94 16 15 O -0.53 -8.01 13.15 -35.23 -0.46 -8.47 16 16 C 0.03 0.25 5.32 -3.83 -0.02 0.23 16 17 N -0.68 -6.17 6.45 -113.78 -0.73 -6.91 16 18 C 0.06 0.40 6.10 -3.82 -0.02 0.38 16 19 C 0.06 0.32 5.08 37.16 0.19 0.51 16 20 O -0.30 -2.25 9.66 -19.56 -0.19 -2.44 16 21 C 0.16 1.14 6.68 -39.24 -0.26 0.88 16 22 C -0.13 -0.81 9.98 -39.43 -0.39 -1.20 16 23 C -0.08 -0.50 10.02 -39.55 -0.40 -0.89 16 24 C 0.02 0.20 7.30 -39.37 -0.29 -0.09 16 25 F -0.13 -1.22 17.18 2.25 0.04 -1.19 16 26 C 0.11 0.93 7.30 -39.38 -0.29 0.64 16 27 F -0.13 -1.20 17.18 2.25 0.04 -1.16 16 28 C -0.22 -1.57 9.01 -39.38 -0.35 -1.92 16 29 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.05 0.83 6.30 -51.93 -0.33 0.51 16 31 H 0.08 1.72 6.86 -51.93 -0.36 1.37 16 32 H 0.03 0.64 6.99 -51.93 -0.36 0.28 16 33 H -0.02 -0.45 7.55 -51.93 -0.39 -0.84 16 34 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 36 H 0.07 1.06 7.93 -51.93 -0.41 0.65 16 37 H 0.37 4.54 9.04 45.56 0.41 4.95 16 38 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.35 3.32 8.29 -39.29 -0.33 2.99 16 41 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 42 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.28 7.65 -51.93 -0.40 -0.11 16 44 H 0.08 0.48 7.67 -51.93 -0.40 0.09 16 45 H 0.15 0.67 8.06 -52.48 -0.42 0.25 16 46 H 0.15 0.55 8.06 -52.49 -0.42 0.12 16 47 H 0.15 0.82 6.30 -52.49 -0.33 0.49 16 LS Contribution 394.02 15.07 5.94 5.94 Total: -1.00 -33.09 394.02 -8.37 -41.46 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -6.16 Total: 2.23 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -1.81 Total: -7.51 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: -1.09 Total: -45.58 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: -0.65 Total: -10.91 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.08 Total: -2.34 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.09 -8.37 -41.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562983961.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.179 kcal (2) G-P(sol) polarization free energy of solvation -33.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds