Wall clock time and date at job start Wed Apr 1 2020 03:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 110.99728 * 2 1 4 4 C 1.50699 * 109.47140 * 66.04805 * 3 2 1 5 5 H 1.08003 * 119.99962 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99861 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99892 * 180.02562 * 6 4 3 8 8 Si 1.86805 * 120.00241 * 359.97438 * 6 4 3 9 9 H 1.48499 * 109.47135 * 90.00125 * 8 6 4 10 10 H 1.48503 * 109.47215 * 210.00315 * 8 6 4 11 11 H 1.48508 * 109.46958 * 330.00276 * 8 6 4 12 12 C 1.46905 * 110.99850 * 236.04849 * 2 1 3 13 13 C 1.53000 * 109.47114 * 293.94896 * 12 2 1 14 14 H 1.09000 * 109.46550 * 60.00064 * 13 12 2 15 15 O 1.42901 * 109.46928 * 300.00575 * 13 12 2 16 16 C 1.52996 * 109.47000 * 180.02562 * 13 12 2 17 17 N 1.46899 * 109.46798 * 185.00066 * 16 13 12 18 18 C 1.46901 * 111.00076 * 179.97438 * 17 16 13 19 19 C 1.52997 * 109.47380 * 180.02562 * 18 17 16 20 20 O 1.42897 * 109.47416 * 65.00090 * 19 18 17 21 21 C 1.35942 * 117.00374 * 180.02562 * 20 19 18 22 22 C 1.38725 * 120.02287 * 180.02562 * 21 20 19 23 23 C 1.38159 * 120.01717 * 179.97438 * 22 21 20 24 24 C 1.38412 * 120.05172 * 0.02562 * 23 22 21 25 25 F 1.35103 * 119.97741 * 179.97438 * 24 23 22 26 26 C 1.38645 * 120.04132 * 359.97438 * 24 23 22 27 27 F 1.35105 * 120.00837 * 180.02562 * 26 24 23 28 28 C 1.38363 * 119.98482 * 359.72717 * 26 24 23 29 29 H 1.08996 * 109.47030 * 59.99921 * 1 2 3 30 30 H 1.08999 * 109.46702 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46890 * 299.99929 * 1 2 3 32 32 H 1.09004 * 109.47040 * 186.04743 * 3 2 1 33 33 H 1.09000 * 109.47033 * 306.04695 * 3 2 1 34 34 H 0.97002 * 119.99998 * 180.02562 * 7 6 4 35 35 H 1.08997 * 109.46807 * 53.95411 * 12 2 1 36 36 H 1.09000 * 109.46636 * 173.95277 * 12 2 1 37 37 H 0.96697 * 113.99735 * 299.99403 * 15 13 12 38 38 H 1.08995 * 109.47058 * 304.99907 * 16 13 12 39 39 H 1.08998 * 109.46953 * 65.00454 * 16 13 12 40 40 H 1.00903 * 111.00138 * 56.05087 * 17 16 13 41 41 H 1.09005 * 109.47140 * 300.00367 * 18 17 16 42 42 H 1.09001 * 109.46992 * 59.99753 * 18 17 16 43 43 H 1.09002 * 109.46949 * 184.99940 * 19 18 17 44 44 H 1.08998 * 109.47226 * 304.99930 * 19 18 17 45 45 H 1.08003 * 119.99069 * 359.97175 * 22 21 20 46 46 H 1.07997 * 119.97466 * 179.97438 * 23 22 21 47 47 H 1.08002 * 120.02431 * 180.29038 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0739 1.5115 2.0485 6 6 2.0267 3.3495 1.5284 7 7 1.7143 3.9390 2.6618 8 14 2.9998 4.2763 0.2309 9 1 2.0631 4.9799 -0.6817 10 1 3.8862 5.2680 0.8913 11 1 3.8238 3.3176 -0.5485 12 6 1.9954 -0.7660 -1.1377 13 6 1.6315 -2.2426 -0.9704 14 1 0.5472 -2.3474 -0.9323 15 8 2.2010 -2.7391 0.2426 16 6 2.1803 -3.0404 -2.1549 17 7 1.7299 -4.4352 -2.0566 18 6 2.2384 -5.2331 -3.1803 19 6 1.7491 -6.6763 -3.0438 20 8 0.3260 -6.7106 -3.1692 21 6 -0.2731 -7.9269 -3.0706 22 6 -1.6517 -8.0328 -3.1836 23 6 -2.2604 -9.2690 -3.0839 24 6 -1.4958 -10.4030 -2.8707 25 9 -2.0927 -11.6111 -2.7730 26 6 -0.1179 -10.2998 -2.7575 27 9 0.6278 -11.4071 -2.5500 28 6 0.4940 -9.0633 -2.8633 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.0797 1.3445 -0.1083 33 1 1.5610 1.9274 -0.8309 34 1 1.9882 4.8554 2.8235 35 1 1.5611 -0.3871 -2.0628 36 1 3.0797 -0.6610 -1.1757 37 1 3.1653 -2.6770 0.2786 38 1 1.8160 -2.6058 -3.0857 39 1 3.2698 -3.0086 -2.1409 40 1 0.7237 -4.4873 -2.0027 41 1 1.8742 -4.8135 -4.1181 42 1 3.3283 -5.2165 -3.1739 43 1 2.1977 -7.2876 -3.8268 44 1 2.0373 -7.0669 -2.0678 45 1 -2.2493 -7.1486 -3.3494 46 1 -3.3337 -9.3506 -3.1715 47 1 1.5678 -8.9828 -2.7799 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000562983961.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:38 Heat of formation + Delta-G solvation = -164.784316 kcal Electronic energy + Delta-G solvation = -28790.383654 eV Core-core repulsion = 24222.899150 eV Total energy + Delta-G solvation = -4567.484504 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.54032 -49.60910 -41.20031 -39.57967 -38.46288 -37.36398 -36.02073 -34.58250 -32.20085 -31.92153 -30.76973 -29.91806 -28.96041 -27.11586 -25.17752 -24.34647 -23.71271 -22.68028 -22.44958 -21.65899 -19.81131 -19.01522 -18.61712 -18.33785 -17.60334 -17.51850 -17.34718 -17.16872 -16.81905 -16.62780 -16.04494 -15.97915 -15.94736 -15.67001 -15.59067 -15.37755 -15.16574 -15.10881 -14.61107 -14.48891 -14.22067 -14.06127 -13.55258 -13.40786 -13.22689 -13.04499 -12.98624 -12.68662 -12.57675 -12.54217 -12.46531 -12.27234 -12.14419 -11.81301 -11.73873 -11.56827 -11.47951 -10.78716 -10.63220 -10.19955 -9.33464 -9.27263 -8.95005 -8.27112 -6.30938 -0.15563 -0.04880 1.34631 1.36986 1.47789 2.03112 2.29852 2.35085 2.76998 2.90460 3.05925 3.19391 3.40020 3.51890 3.77456 3.79110 3.89071 3.93574 3.98314 4.16853 4.22059 4.30530 4.37645 4.40504 4.49303 4.53507 4.62642 4.65302 4.69024 4.76488 4.78844 4.82536 4.83805 4.90394 4.98898 5.01706 5.02470 5.15658 5.26871 5.51838 5.54465 5.96704 6.03082 6.20776 6.37235 6.40427 6.68539 6.76029 7.10126 7.32665 8.89801 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.026693 B = 0.001500 C = 0.001468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.706608 B =18662.438951 C =19063.757289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.540 5.540 3 C 0.172 3.828 4 C -0.518 4.518 5 H 0.034 0.966 6 C 0.004 3.996 7 N -0.950 5.950 8 Si 0.952 3.048 9 H -0.269 1.269 10 H -0.282 1.282 11 H -0.246 1.246 12 C 0.021 3.979 13 C 0.125 3.875 14 H 0.086 0.914 15 O -0.557 6.557 16 C 0.039 3.961 17 N -0.690 5.690 18 C 0.063 3.937 19 C 0.053 3.947 20 O -0.313 6.313 21 C 0.154 3.846 22 C -0.131 4.131 23 C -0.075 4.075 24 C 0.006 3.994 25 F -0.143 7.143 26 C 0.090 3.910 27 F -0.138 7.138 28 C -0.221 4.221 29 H 0.020 0.980 30 H 0.075 0.925 31 H 0.042 0.958 32 H 0.032 0.968 33 H -0.014 1.014 34 H 0.266 0.734 35 H 0.041 0.959 36 H 0.079 0.921 37 H 0.379 0.621 38 H 0.048 0.952 39 H 0.087 0.913 40 H 0.345 0.655 41 H 0.045 0.955 42 H 0.107 0.893 43 H 0.091 0.909 44 H 0.076 0.924 45 H 0.169 0.831 46 H 0.179 0.821 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.919 -27.949 -20.386 34.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.264 5.264 3 C 0.045 3.955 4 C -0.556 4.556 5 H 0.052 0.948 6 C -0.193 4.193 7 N -0.591 5.591 8 Si 0.775 3.225 9 H -0.194 1.194 10 H -0.207 1.207 11 H -0.169 1.169 12 C -0.108 4.108 13 C 0.064 3.936 14 H 0.104 0.896 15 O -0.362 6.362 16 C -0.091 4.091 17 N -0.321 5.321 18 C -0.066 4.066 19 C -0.022 4.022 20 O -0.226 6.226 21 C 0.107 3.893 22 C -0.149 4.149 23 C -0.093 4.093 24 C -0.015 4.015 25 F -0.121 7.121 26 C 0.070 3.930 27 F -0.116 7.116 28 C -0.240 4.240 29 H 0.038 0.962 30 H 0.094 0.906 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.003 0.997 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.097 0.903 37 H 0.226 0.774 38 H 0.066 0.934 39 H 0.105 0.895 40 H 0.163 0.837 41 H 0.063 0.937 42 H 0.125 0.875 43 H 0.109 0.891 44 H 0.094 0.906 45 H 0.186 0.814 46 H 0.196 0.804 47 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -1.910 -28.221 -19.321 34.254 hybrid contribution 0.229 0.964 -1.314 1.646 sum -1.681 -27.257 -20.635 34.228 Atomic orbital electron populations 1.22183 0.87910 1.00837 0.99691 1.61728 1.07950 1.14353 1.42329 1.19966 0.95301 0.85916 0.94348 1.21297 1.34818 0.97523 1.01988 0.94804 1.25911 0.97053 0.98453 0.97842 1.70065 1.48679 1.13842 1.26465 0.85655 0.79153 0.78661 0.79051 1.19380 1.20741 1.16940 1.22903 1.00888 0.95148 0.91866 1.21778 0.98027 0.89230 0.84516 0.89643 1.86582 1.25995 1.84980 1.38663 1.22539 1.01556 0.88220 0.96809 1.60409 1.17208 1.10188 1.44338 1.22083 1.01297 0.90740 0.92467 1.23186 0.77164 0.98736 1.03066 1.86092 1.23900 1.26176 1.86427 1.18853 0.92551 0.83886 0.94013 1.20694 0.91543 0.98975 1.03723 1.21170 1.02128 0.88979 0.97052 1.17866 0.89554 0.82471 1.11568 1.91493 1.83622 1.42651 1.94381 1.17606 0.87727 0.83683 1.03960 1.91512 1.76365 1.51354 1.92401 1.21247 1.02678 0.90041 1.10036 0.96193 0.90614 0.93895 0.95037 0.99670 0.92465 0.94044 0.90293 0.77357 0.93427 0.89481 0.83654 0.93682 0.87472 0.89085 0.90606 0.81375 0.80404 0.81812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.61 9.16 127.69 1.17 2.78 16 2 N -0.54 -21.82 4.62 -927.03 -4.28 -26.11 16 3 C 0.17 8.13 3.79 85.56 0.32 8.45 16 4 C -0.52 -30.28 9.07 25.60 0.23 -30.05 16 5 H 0.03 2.24 7.35 -2.91 -0.02 2.21 16 6 C 0.00 0.26 5.47 84.65 0.46 0.72 16 7 N -0.95 -59.87 13.96 21.45 0.30 -59.57 16 8 Si 0.95 43.61 27.47 68.60 1.88 45.50 16 9 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.25 -10.30 6.54 99.48 0.65 -9.65 16 12 C 0.02 0.60 4.62 86.30 0.40 1.00 16 13 C 0.12 2.98 3.02 30.59 0.09 3.07 16 14 H 0.09 2.16 6.47 -2.39 -0.02 2.15 16 15 O -0.56 -15.89 13.15 -148.98 -1.96 -17.85 16 16 C 0.04 0.64 5.32 86.30 0.46 1.10 16 17 N -0.69 -10.77 6.45 -513.90 -3.32 -14.08 16 18 C 0.06 0.64 6.10 86.30 0.53 1.17 16 19 C 0.05 0.49 5.08 71.98 0.37 0.86 16 20 O -0.31 -3.94 9.66 -92.90 -0.90 -4.84 16 21 C 0.15 1.93 6.68 22.49 0.15 2.08 16 22 C -0.13 -1.33 9.98 22.37 0.22 -1.11 16 23 C -0.07 -0.78 10.02 22.29 0.22 -0.55 16 24 C 0.01 0.09 7.30 22.41 0.16 0.25 16 25 F -0.14 -2.69 17.18 44.97 0.77 -1.92 16 26 C 0.09 1.50 7.30 22.40 0.16 1.67 16 27 F -0.14 -2.68 17.18 44.97 0.77 -1.91 16 28 C -0.22 -2.88 9.01 22.40 0.20 -2.68 16 29 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.08 2.46 6.30 -2.39 -0.02 2.44 16 31 H 0.04 1.92 6.86 -2.39 -0.02 1.91 16 32 H 0.03 1.46 6.99 -2.38 -0.02 1.44 16 33 H -0.01 -0.66 7.55 -2.39 -0.02 -0.68 16 34 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 35 H 0.04 1.11 8.12 -2.39 -0.02 1.09 16 36 H 0.08 2.15 7.93 -2.39 -0.02 2.13 16 37 H 0.38 8.72 9.04 -74.06 -0.67 8.05 16 38 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.35 5.80 8.29 -89.69 -0.74 5.06 16 41 H 0.04 0.44 8.14 -2.38 -0.02 0.42 16 42 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.09 0.48 7.65 -2.39 -0.02 0.46 16 44 H 0.08 0.77 7.67 -2.39 -0.02 0.75 16 45 H 0.17 1.06 8.06 -2.91 -0.02 1.03 16 46 H 0.18 0.87 8.06 -2.91 -0.02 0.84 16 47 H 0.16 1.56 6.30 -2.91 -0.02 1.54 16 Total: -1.00 -73.61 394.02 -2.03 -75.64 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -0.46 Total: 16.39 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: 5.16 Total: -11.24 kcal Atomic # 7 Polarization: -92.46 SS G_CDS: -7.30 Total: -99.76 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -2.86 Total: -22.69 kcal Atomic # 9 Polarization: -5.37 SS G_CDS: 1.55 Total: -3.83 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 1.88 Total: 45.50 kcal Total: -73.61 -2.03 -75.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562983961.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.147 kcal (2) G-P(sol) polarization free energy of solvation -73.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds