Wall clock time and date at job start Wed Apr 1 2020 03:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46899 * 110.99926 * 2 1 4 4 C 1.50705 * 109.47327 * 293.95765 * 3 2 1 5 5 H 1.08001 * 119.99790 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00006 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00059 * 179.97438 * 6 4 3 8 8 Si 1.86798 * 120.00145 * 0.02562 * 6 4 3 9 9 H 1.48495 * 109.47504 * 89.99479 * 8 6 4 10 10 H 1.48498 * 109.47066 * 210.00039 * 8 6 4 11 11 H 1.48500 * 109.46832 * 329.99401 * 8 6 4 12 12 C 1.46895 * 111.00106 * 123.95932 * 2 1 3 13 13 C 1.52996 * 109.47018 * 164.01150 * 12 2 1 14 14 H 1.08996 * 109.47535 * 58.50746 * 13 12 2 15 15 O 1.42894 * 109.47146 * 298.50484 * 13 12 2 16 16 C 1.53004 * 109.46895 * 178.50513 * 13 12 2 17 17 N 1.46905 * 109.46754 * 184.99488 * 16 13 12 18 18 C 1.46899 * 110.99717 * 180.02562 * 17 16 13 19 19 C 1.50704 * 109.47158 * 180.02562 * 18 17 16 20 20 C 1.38289 * 119.96755 * 270.02149 * 19 18 17 21 21 C 1.38250 * 120.10832 * 179.97438 * 20 19 18 22 22 C 1.38168 * 120.05564 * 359.76645 * 21 20 19 23 23 C 1.38714 * 119.94131 * 0.48528 * 22 21 20 24 24 O 1.35897 * 120.05238 * 179.76566 * 23 22 21 25 25 C 1.42901 * 117.00074 * 359.72277 * 24 23 22 26 26 F 1.39906 * 109.46690 * 60.00419 * 25 24 23 27 27 F 1.39898 * 109.47749 * 300.00209 * 25 24 23 28 28 C 1.38119 * 119.97639 * 89.99821 * 19 18 17 29 29 H 1.09005 * 109.46588 * 301.52515 * 1 2 3 30 30 H 1.08993 * 109.47513 * 61.52784 * 1 2 3 31 31 H 1.09003 * 109.46979 * 181.53302 * 1 2 3 32 32 H 1.09000 * 109.47072 * 53.95389 * 3 2 1 33 33 H 1.08999 * 109.47279 * 173.95442 * 3 2 1 34 34 H 0.96996 * 120.00310 * 180.02562 * 7 6 4 35 35 H 1.08997 * 109.47166 * 44.00362 * 12 2 1 36 36 H 1.09012 * 109.46881 * 284.00546 * 12 2 1 37 37 H 0.96704 * 114.00263 * 300.00567 * 15 13 12 38 38 H 1.09000 * 109.46832 * 65.00127 * 16 13 12 39 39 H 1.08993 * 109.47399 * 304.99586 * 16 13 12 40 40 H 1.00908 * 110.99637 * 56.05378 * 17 16 13 41 41 H 1.08995 * 109.47603 * 60.00094 * 18 17 16 42 42 H 1.09006 * 109.47565 * 300.00372 * 18 17 16 43 43 H 1.07995 * 119.94391 * 0.02562 * 20 19 18 44 44 H 1.08001 * 119.96683 * 180.02562 * 21 20 19 45 45 H 1.07993 * 120.02411 * 180.25480 * 22 21 20 46 46 H 1.08999 * 109.47421 * 179.97438 * 25 24 23 47 47 H 1.08004 * 120.02363 * 0.02580 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0738 1.5116 -2.0484 6 6 2.0267 3.3495 -1.5284 7 7 1.7142 3.9391 -2.6617 8 14 2.9999 4.2762 -0.2309 9 1 4.4523 4.0637 -0.4558 10 1 2.6917 5.7259 -0.3224 11 1 2.6293 3.7756 1.1172 12 6 1.9955 -0.7661 1.1375 13 6 3.4728 -1.0839 0.8982 14 1 4.0282 -0.1550 0.7696 15 8 3.6034 -1.8838 -0.2787 16 6 4.0308 -1.8495 2.0997 17 7 5.4755 -2.0502 1.9244 18 6 6.0467 -2.7843 3.0613 19 6 7.5268 -2.9702 2.8467 20 6 7.9934 -4.0915 2.1853 21 6 9.3505 -4.2647 1.9864 22 6 10.2438 -3.3151 2.4440 23 6 9.7785 -2.1921 3.1123 24 8 10.6554 -1.2590 3.5675 25 6 12.0432 -1.5016 3.3282 26 9 12.2702 -1.5903 1.9505 27 9 12.4194 -2.7015 3.9411 28 6 8.4160 -2.0204 3.3103 29 1 -0.3633 0.5374 0.8761 30 1 -0.3634 0.4899 -0.9033 31 1 -0.3633 -1.0273 0.0275 32 1 1.5611 1.9273 0.8309 33 1 3.0798 1.3444 0.1082 34 1 1.9888 4.8552 -2.8237 35 1 1.4357 -1.6956 1.2397 36 1 1.8935 -0.1782 2.0498 37 1 3.1333 -2.7277 -0.2349 38 1 3.5360 -2.8178 2.1751 39 1 3.8513 -1.2778 3.0101 40 1 5.9489 -1.1697 1.7874 41 1 5.5659 -3.7590 3.1431 42 1 5.8811 -2.2194 3.9788 43 1 7.2965 -4.8326 1.8229 44 1 9.7124 -5.1410 1.4692 45 1 11.3035 -3.4489 2.2847 46 1 12.6317 -0.6822 3.7409 47 1 8.0510 -1.1450 3.8269 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566108415.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:06 Heat of formation + Delta-G solvation = -156.086932 kcal Electronic energy + Delta-G solvation = -29511.276663 eV Core-core repulsion = 24944.169305 eV Total energy + Delta-G solvation = -4567.107358 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.79199 -47.77966 -40.38477 -38.49076 -37.91775 -36.05284 -34.96687 -32.41530 -31.86615 -30.77552 -29.54153 -27.97978 -26.68637 -26.36015 -24.52983 -23.07899 -22.82803 -21.82501 -21.49060 -19.93949 -19.09961 -18.51232 -18.35141 -16.94610 -16.76069 -16.54888 -16.03176 -15.77386 -15.32557 -15.17529 -14.99999 -14.71080 -14.62982 -14.35766 -14.33390 -14.12906 -14.09433 -13.82335 -13.56539 -13.32101 -13.10111 -12.98216 -12.56975 -12.40297 -12.31781 -12.10945 -11.87986 -11.65183 -11.52711 -11.34032 -11.20493 -11.07121 -10.76760 -10.49702 -10.17429 -9.87405 -9.56860 -9.26391 -9.17119 -8.72043 -8.53468 -8.50029 -7.32642 -6.01621 -3.98148 0.93832 1.05948 2.12733 3.01903 3.29544 3.32597 3.36521 3.36711 3.84126 4.04446 4.18776 4.42215 4.44025 4.46277 4.63977 4.73891 4.82036 4.88377 4.99932 5.09655 5.15964 5.25479 5.30166 5.35570 5.40143 5.50950 5.60079 5.62386 5.67450 5.84261 5.91659 6.03828 6.08885 6.17719 6.24671 6.30396 6.36575 6.66414 6.74105 6.81620 6.86266 6.98422 7.20011 7.62096 7.89845 8.05314 8.20459 8.69624 9.07860 9.60034 11.11780 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012025 B = 0.002166 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.899222 B =12926.346763 C =14521.242007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.521 5.521 3 C 0.162 3.838 4 C -0.505 4.505 5 H 0.081 0.919 6 C 0.067 3.933 7 N -0.901 5.901 8 Si 0.873 3.127 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.270 1.270 12 C 0.023 3.977 13 C 0.117 3.883 14 H 0.097 0.903 15 O -0.529 6.529 16 C 0.028 3.972 17 N -0.674 5.674 18 C 0.098 3.902 19 C -0.047 4.047 20 C -0.117 4.117 21 C -0.084 4.084 22 C -0.190 4.190 23 C 0.102 3.898 24 O -0.321 6.321 25 C 0.412 3.588 26 F -0.197 7.197 27 F -0.200 7.200 28 C -0.129 4.129 29 H 0.010 0.990 30 H 0.079 0.921 31 H 0.046 0.954 32 H -0.015 1.015 33 H 0.024 0.976 34 H 0.263 0.737 35 H 0.065 0.935 36 H 0.029 0.971 37 H 0.362 0.638 38 H 0.075 0.925 39 H 0.036 0.964 40 H 0.346 0.654 41 H 0.084 0.916 42 H 0.039 0.961 43 H 0.130 0.870 44 H 0.129 0.871 45 H 0.131 0.869 46 H 0.181 0.819 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.925 -16.631 17.399 30.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.245 5.245 3 C 0.036 3.964 4 C -0.543 4.543 5 H 0.099 0.901 6 C -0.134 4.134 7 N -0.540 5.540 8 Si 0.701 3.299 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.195 1.195 12 C -0.107 4.107 13 C 0.056 3.944 14 H 0.115 0.885 15 O -0.331 6.331 16 C -0.102 4.102 17 N -0.305 5.305 18 C -0.031 4.031 19 C -0.047 4.047 20 C -0.136 4.136 21 C -0.102 4.102 22 C -0.209 4.209 23 C 0.059 3.941 24 O -0.239 6.239 25 C 0.322 3.678 26 F -0.179 7.179 27 F -0.182 7.182 28 C -0.148 4.148 29 H 0.029 0.971 30 H 0.098 0.902 31 H 0.065 0.935 32 H 0.003 0.997 33 H 0.042 0.958 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.047 0.953 37 H 0.207 0.793 38 H 0.094 0.906 39 H 0.054 0.946 40 H 0.164 0.836 41 H 0.102 0.898 42 H 0.057 0.943 43 H 0.148 0.852 44 H 0.147 0.853 45 H 0.149 0.851 46 H 0.198 0.802 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 18.342 -16.586 16.362 29.652 hybrid contribution 0.205 1.116 2.179 2.456 sum 18.548 -15.470 18.540 30.448 Atomic orbital electron populations 1.22233 0.88132 0.99267 1.01284 1.61847 1.06994 1.16401 1.39209 1.20225 0.94931 0.84071 0.97216 1.21020 1.35397 0.97045 1.00844 0.90099 1.24897 0.95839 0.97392 0.95262 1.69890 1.47041 1.13259 1.23810 0.86893 0.81068 0.79321 0.82661 1.20058 1.21199 1.19471 1.22745 0.96102 0.98511 0.93340 1.21856 0.94367 0.94055 0.84076 0.88503 1.86707 1.75412 1.33177 1.37802 1.22759 0.88661 1.00696 0.98122 1.60400 1.03072 1.26479 1.40535 1.20902 0.89918 0.99926 0.92326 1.19583 0.94814 0.93777 0.96567 1.21055 0.95358 0.98113 0.99073 1.20973 0.92950 0.98333 0.97935 1.21517 1.01119 0.95323 1.02937 1.18777 0.89582 0.88895 0.96839 1.86618 1.15406 1.46167 1.75713 1.23359 0.82731 0.86104 0.75637 1.93114 1.94253 1.96688 1.33874 1.93095 1.91161 1.51101 1.82831 1.20306 0.89320 1.00903 1.04243 0.97141 0.90198 0.93519 0.99722 0.95822 0.92710 0.91604 0.95321 0.79257 0.90640 0.94592 0.83574 0.89796 0.94279 0.85242 0.85296 0.85108 0.80224 0.85087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 9.32 60.07 0.56 1.31 16 2 N -0.52 -10.91 4.60 -244.37 -1.12 -12.04 16 3 C 0.16 3.97 3.64 -4.97 -0.02 3.96 16 4 C -0.50 -14.63 9.09 -34.44 -0.31 -14.94 16 5 H 0.08 2.56 7.34 -52.49 -0.39 2.17 16 6 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 7 N -0.90 -28.03 13.96 55.43 0.77 -27.26 16 8 Si 0.87 21.76 27.47 -169.99 -4.67 17.09 16 9 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 12 C 0.02 0.37 4.63 -3.83 -0.02 0.35 16 13 C 0.12 1.78 3.17 -26.73 -0.08 1.70 16 14 H 0.10 1.72 6.55 -51.93 -0.34 1.38 16 15 O -0.53 -8.83 13.18 -35.23 -0.46 -9.29 16 16 C 0.03 0.31 5.32 -3.82 -0.02 0.29 16 17 N -0.67 -7.69 6.44 -115.05 -0.74 -8.44 16 18 C 0.10 0.91 5.81 -4.97 -0.03 0.88 16 19 C -0.05 -0.47 5.39 -104.64 -0.56 -1.03 16 20 C -0.12 -1.13 9.70 -39.56 -0.38 -1.51 16 21 C -0.08 -0.78 10.04 -39.60 -0.40 -1.18 16 22 C -0.19 -1.93 8.26 -39.43 -0.33 -2.26 16 23 C 0.10 1.09 6.48 -39.22 -0.25 0.83 16 24 O -0.32 -3.00 10.43 -19.42 -0.20 -3.20 16 25 C 0.41 2.66 5.98 101.05 0.60 3.26 16 26 F -0.20 -1.67 15.57 2.25 0.04 -1.64 16 27 F -0.20 -1.54 15.60 2.25 0.04 -1.50 16 28 C -0.13 -1.33 9.64 -39.44 -0.38 -1.71 16 29 H 0.01 0.19 8.13 -51.93 -0.42 -0.23 16 30 H 0.08 1.70 6.90 -51.93 -0.36 1.34 16 31 H 0.05 0.74 7.97 -51.93 -0.41 0.33 16 32 H -0.01 -0.37 7.17 -51.93 -0.37 -0.74 16 33 H 0.02 0.59 5.81 -51.93 -0.30 0.29 16 34 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 35 H 0.07 0.89 7.88 -51.93 -0.41 0.49 16 36 H 0.03 0.45 8.05 -51.92 -0.42 0.04 16 37 H 0.36 4.63 9.05 45.56 0.41 5.04 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.35 4.19 8.72 -39.29 -0.34 3.85 16 41 H 0.08 0.70 8.09 -51.93 -0.42 0.28 16 42 H 0.04 0.33 8.08 -51.93 -0.42 -0.09 16 43 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 44 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 45 H 0.13 1.24 5.10 -52.49 -0.27 0.97 16 46 H 0.18 0.28 8.14 -51.93 -0.42 -0.14 16 47 H 0.13 1.22 8.06 -52.48 -0.42 0.79 16 LS Contribution 391.68 15.07 5.90 5.90 Total: -1.00 -34.76 391.68 -8.34 -43.10 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -6.16 Total: 5.45 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -1.72 Total: -8.17 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: -1.09 Total: -47.73 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -0.67 Total: -12.50 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.07 Total: -3.14 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.76 -8.34 -43.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566108415.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.983 kcal (2) G-P(sol) polarization free energy of solvation -34.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds