Wall clock time and date at job start Wed Apr 1 2020 03:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46899 * 110.99926 * 2 1 4 4 C 1.50705 * 109.47327 * 293.95765 * 3 2 1 5 5 H 1.08001 * 119.99790 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00006 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00059 * 179.97438 * 6 4 3 8 8 Si 1.86798 * 120.00145 * 0.02562 * 6 4 3 9 9 H 1.48495 * 109.47504 * 89.99479 * 8 6 4 10 10 H 1.48498 * 109.47066 * 210.00039 * 8 6 4 11 11 H 1.48500 * 109.46832 * 329.99401 * 8 6 4 12 12 C 1.46895 * 111.00106 * 123.95932 * 2 1 3 13 13 C 1.52996 * 109.47018 * 164.01150 * 12 2 1 14 14 H 1.08996 * 109.47535 * 58.50746 * 13 12 2 15 15 O 1.42894 * 109.47146 * 298.50484 * 13 12 2 16 16 C 1.53004 * 109.46895 * 178.50513 * 13 12 2 17 17 N 1.46905 * 109.46754 * 184.99488 * 16 13 12 18 18 C 1.46899 * 110.99717 * 180.02562 * 17 16 13 19 19 C 1.50704 * 109.47158 * 180.02562 * 18 17 16 20 20 C 1.38289 * 119.96755 * 270.02149 * 19 18 17 21 21 C 1.38250 * 120.10832 * 179.97438 * 20 19 18 22 22 C 1.38168 * 120.05564 * 359.76645 * 21 20 19 23 23 C 1.38714 * 119.94131 * 0.48528 * 22 21 20 24 24 O 1.35897 * 120.05238 * 179.76566 * 23 22 21 25 25 C 1.42901 * 117.00074 * 359.72277 * 24 23 22 26 26 F 1.39906 * 109.46690 * 60.00419 * 25 24 23 27 27 F 1.39898 * 109.47749 * 300.00209 * 25 24 23 28 28 C 1.38119 * 119.97639 * 89.99821 * 19 18 17 29 29 H 1.09005 * 109.46588 * 301.52515 * 1 2 3 30 30 H 1.08993 * 109.47513 * 61.52784 * 1 2 3 31 31 H 1.09003 * 109.46979 * 181.53302 * 1 2 3 32 32 H 1.09000 * 109.47072 * 53.95389 * 3 2 1 33 33 H 1.08999 * 109.47279 * 173.95442 * 3 2 1 34 34 H 0.96996 * 120.00310 * 180.02562 * 7 6 4 35 35 H 1.08997 * 109.47166 * 44.00362 * 12 2 1 36 36 H 1.09012 * 109.46881 * 284.00546 * 12 2 1 37 37 H 0.96704 * 114.00263 * 300.00567 * 15 13 12 38 38 H 1.09000 * 109.46832 * 65.00127 * 16 13 12 39 39 H 1.08993 * 109.47399 * 304.99586 * 16 13 12 40 40 H 1.00908 * 110.99637 * 56.05378 * 17 16 13 41 41 H 1.08995 * 109.47603 * 60.00094 * 18 17 16 42 42 H 1.09006 * 109.47565 * 300.00372 * 18 17 16 43 43 H 1.07995 * 119.94391 * 0.02562 * 20 19 18 44 44 H 1.08001 * 119.96683 * 180.02562 * 21 20 19 45 45 H 1.07993 * 120.02411 * 180.25480 * 22 21 20 46 46 H 1.08999 * 109.47421 * 179.97438 * 25 24 23 47 47 H 1.08004 * 120.02363 * 0.02580 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0738 1.5116 -2.0484 6 6 2.0267 3.3495 -1.5284 7 7 1.7142 3.9391 -2.6617 8 14 2.9999 4.2762 -0.2309 9 1 4.4523 4.0637 -0.4558 10 1 2.6917 5.7259 -0.3224 11 1 2.6293 3.7756 1.1172 12 6 1.9955 -0.7661 1.1375 13 6 3.4728 -1.0839 0.8982 14 1 4.0282 -0.1550 0.7696 15 8 3.6034 -1.8838 -0.2787 16 6 4.0308 -1.8495 2.0997 17 7 5.4755 -2.0502 1.9244 18 6 6.0467 -2.7843 3.0613 19 6 7.5268 -2.9702 2.8467 20 6 7.9934 -4.0915 2.1853 21 6 9.3505 -4.2647 1.9864 22 6 10.2438 -3.3151 2.4440 23 6 9.7785 -2.1921 3.1123 24 8 10.6554 -1.2590 3.5675 25 6 12.0432 -1.5016 3.3282 26 9 12.2702 -1.5903 1.9505 27 9 12.4194 -2.7015 3.9411 28 6 8.4160 -2.0204 3.3103 29 1 -0.3633 0.5374 0.8761 30 1 -0.3634 0.4899 -0.9033 31 1 -0.3633 -1.0273 0.0275 32 1 1.5611 1.9273 0.8309 33 1 3.0798 1.3444 0.1082 34 1 1.9888 4.8552 -2.8237 35 1 1.4357 -1.6956 1.2397 36 1 1.8935 -0.1782 2.0498 37 1 3.1333 -2.7277 -0.2349 38 1 3.5360 -2.8178 2.1751 39 1 3.8513 -1.2778 3.0101 40 1 5.9489 -1.1697 1.7874 41 1 5.5659 -3.7590 3.1431 42 1 5.8811 -2.2194 3.9788 43 1 7.2965 -4.8326 1.8229 44 1 9.7124 -5.1410 1.4692 45 1 11.3035 -3.4489 2.2847 46 1 12.6317 -0.6822 3.7409 47 1 8.0510 -1.1450 3.8269 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566108415.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:05 Heat of formation + Delta-G solvation = -184.315161 kcal Electronic energy + Delta-G solvation = -29512.500731 eV Core-core repulsion = 24944.169305 eV Total energy + Delta-G solvation = -4568.331425 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.34602 -48.34608 -41.07115 -39.59273 -38.78182 -37.35968 -36.03345 -34.58588 -32.71470 -31.50023 -30.78462 -29.84409 -27.61342 -27.04202 -25.79732 -24.50256 -23.59609 -22.81790 -22.40934 -21.55025 -19.73400 -19.09360 -19.05207 -18.91686 -17.70799 -17.24777 -16.98943 -16.93302 -16.46686 -16.22042 -16.05966 -15.88593 -15.69247 -15.45973 -15.16012 -15.02384 -14.93628 -14.71182 -14.67232 -14.51825 -14.40020 -14.10199 -13.81340 -13.48779 -13.21585 -13.14031 -13.02742 -12.82018 -12.67918 -12.57446 -12.39073 -12.32480 -12.24412 -11.93824 -11.86791 -11.64006 -11.42458 -10.77628 -10.67893 -9.98691 -9.44673 -9.31126 -8.93693 -8.28205 -6.30911 0.20235 0.33292 1.32026 1.34221 1.43843 1.59425 2.33326 2.52342 2.58296 3.02690 3.07089 3.46369 3.49287 3.66705 3.69383 3.79938 3.81670 3.94277 4.04411 4.13721 4.23333 4.31087 4.36125 4.40695 4.47987 4.54635 4.61655 4.67241 4.69368 4.72298 4.78404 4.90979 4.98232 5.01116 5.13025 5.19692 5.23010 5.37918 5.49158 5.55640 5.58638 5.96618 6.02633 6.07190 6.31038 6.39948 6.67805 6.75470 7.17513 7.32142 8.88816 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012025 B = 0.002166 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.899222 B =12926.346763 C =14521.242007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.543 5.543 3 C 0.174 3.826 4 C -0.514 4.514 5 H 0.035 0.965 6 C 0.005 3.995 7 N -0.949 5.949 8 Si 0.946 3.054 9 H -0.267 1.267 10 H -0.280 1.280 11 H -0.250 1.250 12 C 0.024 3.976 13 C 0.120 3.880 14 H 0.065 0.935 15 O -0.555 6.555 16 C 0.042 3.958 17 N -0.686 5.686 18 C 0.103 3.897 19 C -0.052 4.052 20 C -0.126 4.126 21 C -0.089 4.089 22 C -0.203 4.203 23 C 0.087 3.913 24 O -0.332 6.332 25 C 0.405 3.595 26 F -0.211 7.211 27 F -0.209 7.209 28 C -0.142 4.142 29 H 0.018 0.982 30 H 0.043 0.957 31 H 0.083 0.917 32 H -0.014 1.014 33 H 0.024 0.976 34 H 0.266 0.734 35 H 0.099 0.901 36 H 0.039 0.961 37 H 0.379 0.621 38 H 0.097 0.903 39 H 0.048 0.952 40 H 0.338 0.662 41 H 0.097 0.903 42 H 0.049 0.951 43 H 0.143 0.857 44 H 0.149 0.851 45 H 0.133 0.867 46 H 0.232 0.768 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.727 -17.722 20.106 32.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.267 5.267 3 C 0.047 3.953 4 C -0.552 4.552 5 H 0.054 0.946 6 C -0.192 4.192 7 N -0.590 5.590 8 Si 0.770 3.230 9 H -0.192 1.192 10 H -0.205 1.205 11 H -0.173 1.173 12 C -0.105 4.105 13 C 0.059 3.941 14 H 0.083 0.917 15 O -0.361 6.361 16 C -0.088 4.088 17 N -0.317 5.317 18 C -0.025 4.025 19 C -0.053 4.053 20 C -0.144 4.144 21 C -0.107 4.107 22 C -0.222 4.222 23 C 0.044 3.956 24 O -0.250 6.250 25 C 0.316 3.684 26 F -0.193 7.193 27 F -0.191 7.191 28 C -0.161 4.161 29 H 0.036 0.964 30 H 0.062 0.938 31 H 0.102 0.898 32 H 0.003 0.997 33 H 0.042 0.958 34 H 0.075 0.925 35 H 0.117 0.883 36 H 0.057 0.943 37 H 0.226 0.774 38 H 0.115 0.885 39 H 0.066 0.934 40 H 0.156 0.844 41 H 0.116 0.884 42 H 0.067 0.933 43 H 0.161 0.839 44 H 0.167 0.833 45 H 0.151 0.849 46 H 0.248 0.752 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 19.134 -17.720 19.088 32.318 hybrid contribution -0.066 1.352 1.250 1.843 sum 19.067 -16.368 20.339 32.328 Atomic orbital electron populations 1.22192 0.87318 1.01276 0.99781 1.61712 1.07981 1.14535 1.42450 1.19933 0.94939 0.86038 0.94411 1.21288 1.34651 0.97392 1.01917 0.94627 1.25878 0.97084 0.98516 0.97754 1.70054 1.48769 1.13900 1.26311 0.85729 0.79380 0.77748 0.80186 1.19187 1.20525 1.17322 1.22865 0.96812 0.99113 0.91662 1.21769 0.93631 0.93410 0.85259 0.91727 1.86659 1.76014 1.34380 1.39033 1.22576 0.88605 1.01289 0.96328 1.60401 1.03161 1.26267 1.41865 1.20917 0.89329 1.00381 0.91870 1.19741 0.95269 0.93805 0.96488 1.21291 0.95741 0.98398 0.98988 1.21270 0.92973 0.98791 0.97647 1.21671 1.01489 0.95653 1.03357 1.19009 0.90163 0.89351 0.97096 1.86603 1.16583 1.46091 1.75704 1.24233 0.81978 0.87093 0.75054 1.93082 1.94212 1.96783 1.35240 1.93072 1.91077 1.52038 1.82867 1.20495 0.89534 1.01379 1.04704 0.96379 0.93834 0.89816 0.99691 0.95771 0.92476 0.88291 0.94329 0.77375 0.88461 0.93383 0.84411 0.88429 0.93285 0.83924 0.83346 0.84931 0.75184 0.84563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.58 9.32 127.69 1.19 2.77 16 2 N -0.54 -22.21 4.60 -927.03 -4.27 -26.48 16 3 C 0.17 8.49 3.64 85.56 0.31 8.80 16 4 C -0.51 -30.71 9.09 25.60 0.23 -30.47 16 5 H 0.04 2.38 7.34 -2.91 -0.02 2.36 16 6 C 0.00 0.27 5.47 84.65 0.46 0.74 16 7 N -0.95 -60.90 13.96 21.45 0.30 -60.60 16 8 Si 0.95 44.98 27.47 68.60 1.88 46.86 16 9 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 11 H -0.25 -10.95 6.54 99.48 0.65 -10.30 16 12 C 0.02 0.71 4.63 86.30 0.40 1.11 16 13 C 0.12 3.41 3.17 30.59 0.10 3.51 16 14 H 0.06 2.26 6.55 -2.39 -0.02 2.24 16 15 O -0.56 -17.77 13.18 -148.98 -1.96 -19.73 16 16 C 0.04 0.81 5.32 86.30 0.46 1.27 16 17 N -0.69 -14.20 6.44 -517.91 -3.33 -17.53 16 18 C 0.10 1.65 5.81 85.56 0.50 2.15 16 19 C -0.05 -0.97 5.39 -19.88 -0.11 -1.08 16 20 C -0.13 -2.22 9.70 22.28 0.22 -2.01 16 21 C -0.09 -1.57 10.04 22.26 0.22 -1.34 16 22 C -0.20 -4.02 8.26 22.37 0.18 -3.83 16 23 C 0.09 1.81 6.48 22.51 0.15 1.96 16 24 O -0.33 -5.94 10.43 -92.40 -0.96 -6.90 16 25 C 0.41 4.72 5.98 113.37 0.68 5.39 16 26 F -0.21 -3.44 15.57 44.97 0.70 -2.74 16 27 F -0.21 -3.03 15.60 44.97 0.70 -2.33 16 28 C -0.14 -2.83 9.64 22.36 0.22 -2.61 16 29 H 0.02 0.63 8.13 -2.38 -0.02 0.61 16 30 H 0.04 1.91 6.90 -2.39 -0.02 1.89 16 31 H 0.08 2.46 7.97 -2.39 -0.02 2.44 16 32 H -0.01 -0.70 7.17 -2.39 -0.02 -0.72 16 33 H 0.02 1.18 5.81 -2.39 -0.01 1.17 16 34 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 35 H 0.10 2.26 7.88 -2.39 -0.02 2.24 16 36 H 0.04 1.08 8.05 -2.38 -0.02 1.06 16 37 H 0.38 8.83 9.05 -74.05 -0.67 8.17 16 38 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.34 7.80 8.72 -89.69 -0.78 7.01 16 41 H 0.10 1.30 8.09 -2.39 -0.02 1.28 16 42 H 0.05 0.70 8.08 -2.38 -0.02 0.68 16 43 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 44 H 0.15 1.89 8.06 -2.91 -0.02 1.86 16 45 H 0.13 2.47 5.10 -2.91 -0.01 2.46 16 46 H 0.23 0.13 8.14 -2.39 -0.02 0.11 16 47 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -78.21 391.68 -2.24 -80.45 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: -0.50 Total: 22.65 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: 5.21 Total: -13.65 kcal Atomic # 7 Polarization: -97.31 SS G_CDS: -7.30 Total: -104.61 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -2.93 Total: -26.63 kcal Atomic # 9 Polarization: -6.47 SS G_CDS: 1.40 Total: -5.07 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.88 Total: 46.86 kcal Total: -78.21 -2.24 -80.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566108415.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.867 kcal (2) G-P(sol) polarization free energy of solvation -78.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds