Wall clock time and date at job start Wed Apr 1 2020 04:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42105 * 110.54275 * 2 1 4 4 O 1.42101 * 110.54298 * 223.25103 * 2 1 3 5 5 N 1.65599 * 104.44825 * 111.62486 * 2 1 3 6 6 C 1.47077 * 120.88240 * 269.72050 * 5 2 1 7 7 C 1.53694 * 108.27431 * 128.75621 * 6 5 2 8 8 N 1.46893 * 109.25658 * 54.08603 * 7 6 5 9 9 C 1.46900 * 111.00047 * 172.60720 * 8 7 6 10 10 C 1.53010 * 109.47011 * 294.29927 * 9 8 7 11 11 N 1.46900 * 109.47011 * 179.97438 * 10 9 8 12 12 C 1.46894 * 110.99788 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.46988 * 179.97438 * 12 11 10 14 14 H 1.09000 * 109.47526 * 305.00047 * 13 12 11 15 15 C 1.47198 * 109.47144 * 65.00436 * 13 12 11 16 16 N 9.72149 * 122.07860 * 180.11422 * 5 1 2 17 17 C 1.53002 * 109.46950 * 184.99889 * 13 12 11 18 18 C 1.50701 * 109.47295 * 175.00163 * 17 13 12 19 19 H 1.08008 * 119.99746 * 359.97438 * 18 17 13 20 20 C 1.37871 * 120.00551 * 180.02562 * 18 17 13 21 21 N 1.31518 * 120.00464 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99729 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47067 * 90.00510 * 22 20 18 24 24 H 1.48504 * 109.47011 * 210.00547 * 22 20 18 25 25 H 1.48495 * 109.47254 * 330.00150 * 22 20 18 26 26 C 1.46903 * 111.26839 * 296.75139 * 8 7 6 27 27 C 1.47075 * 120.87816 * 90.00229 * 5 2 1 28 28 H 1.09003 * 109.47352 * 68.37645 * 1 2 3 29 29 H 1.09004 * 109.47032 * 188.37317 * 1 2 3 30 30 H 1.09000 * 109.47124 * 308.37589 * 1 2 3 31 31 H 1.08999 * 109.62966 * 248.52935 * 6 5 2 32 32 H 1.09003 * 109.62478 * 9.10425 * 6 5 2 33 33 H 1.08998 * 109.64887 * 294.07442 * 7 6 5 34 34 H 1.09008 * 109.41682 * 173.94884 * 7 6 5 35 35 H 1.08995 * 109.47387 * 54.29828 * 9 8 7 36 36 H 1.09007 * 109.47451 * 174.30260 * 9 8 7 37 37 H 1.08993 * 109.46669 * 299.99709 * 10 9 8 38 38 H 1.08994 * 109.47021 * 59.99956 * 10 9 8 39 39 H 1.00898 * 110.99879 * 303.95265 * 11 10 9 40 40 H 1.09003 * 109.47324 * 300.00088 * 12 11 10 41 41 H 1.08999 * 109.47292 * 60.00376 * 12 11 10 42 42 H 1.09000 * 109.47480 * 295.00039 * 17 13 12 43 43 H 1.08995 * 109.47386 * 55.00474 * 17 13 12 44 44 H 0.96994 * 120.00072 * 179.97438 * 21 20 18 45 45 H 1.08998 * 109.49149 * 303.15034 * 26 8 7 46 46 H 1.08998 * 109.49119 * 183.06354 * 26 8 7 47 47 H 1.09000 * 109.63319 * 350.89334 * 27 5 2 48 48 H 1.09009 * 109.63221 * 111.47509 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9118 5 7 2.2272 -0.5910 1.4908 6 6 2.4215 0.3136 2.6341 7 6 1.5765 -0.2055 3.8083 8 7 1.9155 -1.6115 4.0649 9 6 1.2610 -2.0962 5.2874 10 6 1.8262 -1.3509 6.4983 11 7 1.1712 -1.8353 7.7208 12 6 1.6904 -1.1409 8.9066 13 6 0.9856 -1.6705 10.1570 14 1 -0.0932 -1.5740 10.0345 15 6 1.3325 -3.0876 10.3527 16 7 1.6038 -4.1815 10.5033 17 6 1.4347 -0.8625 11.3763 18 6 0.6508 -1.3014 12.5863 19 1 -0.0936 -2.0787 12.4947 20 6 0.8831 -0.7102 13.8099 21 7 0.1987 -1.0929 14.8658 22 14 2.1700 0.6345 13.9682 23 1 1.5369 1.9562 13.7287 24 1 2.7519 0.6045 15.3342 25 1 3.2444 0.4117 12.9676 26 6 1.5765 -2.4599 2.9145 27 6 2.4155 -2.0338 1.7050 28 1 -0.3634 0.3787 -0.9553 29 1 -0.3633 -1.0168 0.1497 30 1 -0.3633 0.6380 0.8056 31 1 3.4746 0.3278 2.9149 32 1 2.0979 1.3190 2.3646 33 1 0.5178 -0.1257 3.5615 34 1 1.7887 0.3880 4.6977 35 1 0.1878 -1.9185 5.2199 36 1 1.4461 -3.1646 5.3996 37 1 2.8994 -1.5287 6.5658 38 1 1.6412 -0.2827 6.3862 39 1 0.1688 -1.7404 7.6558 40 1 2.7627 -1.3179 8.9909 41 1 1.5052 -0.0710 8.8113 42 1 2.4974 -1.0297 11.5517 43 1 1.2588 0.1977 11.1945 44 1 0.3624 -0.6772 15.7267 45 1 0.5179 -2.3487 2.6801 46 1 1.7888 -3.5015 3.1556 47 1 2.0880 -2.5812 0.8212 48 1 3.4681 -2.2410 1.8983 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591729174.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:12 Heat of formation + Delta-G solvation = -31.363831 kcal Electronic energy + Delta-G solvation = -27510.745934 eV Core-core repulsion = 23535.180114 eV Total energy + Delta-G solvation = -3975.565820 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 2.45 seconds Orbital eigenvalues (eV) -39.58740 -37.67161 -37.57430 -36.46782 -35.93267 -34.64414 -33.47373 -31.90848 -31.62878 -30.05161 -29.35542 -27.07916 -25.32862 -24.36875 -22.67711 -22.00527 -21.37728 -21.04374 -19.30291 -18.27722 -17.24003 -16.88871 -16.88005 -16.67834 -16.02475 -15.78795 -15.21177 -15.14172 -15.09682 -14.65218 -14.59715 -14.03575 -13.95886 -13.77350 -13.75659 -13.41504 -13.13087 -13.04841 -12.65597 -12.60620 -12.47462 -12.37689 -12.28141 -12.14120 -11.96470 -11.81040 -11.68424 -11.52917 -11.48779 -11.29082 -11.23253 -10.98334 -10.79320 -10.44119 -9.97447 -9.79570 -9.64619 -9.35683 -8.75800 -8.64646 -8.44252 -6.13335 -4.14262 -0.29951 2.04757 3.23320 3.26715 3.32914 3.33530 3.34758 3.56160 3.67451 3.75243 3.96821 4.20925 4.29422 4.30380 4.35713 4.50677 4.61469 4.65126 4.75958 4.76627 4.81583 4.93948 4.99630 5.06837 5.16320 5.19178 5.21384 5.34134 5.38342 5.42289 5.51556 5.54825 5.57663 5.72682 5.81133 5.84333 5.97673 6.17035 6.25247 6.59271 6.60389 6.88037 6.93745 7.09148 7.33390 7.60713 8.37553 8.52257 8.90055 9.46372 10.99693 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.024222 B = 0.001698 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.677654 B =16484.593640 C =17137.487071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.674 4.674 2 S 2.610 3.390 3 O -0.954 6.954 4 O -0.954 6.954 5 N -1.002 6.002 6 C 0.127 3.873 7 C 0.035 3.965 8 N -0.534 5.534 9 C 0.058 3.942 10 C 0.063 3.937 11 N -0.693 5.693 12 C 0.067 3.933 13 C 0.020 3.980 14 H 0.104 0.896 15 C 0.251 3.749 16 N -0.470 5.470 17 C -0.005 4.005 18 C -0.529 4.529 19 H 0.074 0.926 20 C 0.071 3.929 21 N -0.897 5.897 22 Si 0.878 3.122 23 H -0.275 1.275 24 H -0.287 1.287 25 H -0.264 1.264 26 C 0.041 3.959 27 C 0.127 3.873 28 H 0.127 0.873 29 H 0.126 0.874 30 H 0.127 0.873 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.038 0.962 34 H 0.093 0.907 35 H 0.033 0.967 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.030 0.970 39 H 0.341 0.659 40 H 0.078 0.922 41 H 0.049 0.951 42 H 0.026 0.974 43 H 0.032 0.968 44 H 0.265 0.735 45 H 0.037 0.963 46 H 0.090 0.910 47 H 0.093 0.907 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.038 4.805 -32.194 32.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.824 4.824 2 S 2.703 3.297 3 O -0.944 6.944 4 O -0.945 6.945 5 N -0.840 5.840 6 C 0.001 3.999 7 C -0.095 4.095 8 N -0.259 5.259 9 C -0.070 4.070 10 C -0.066 4.066 11 N -0.325 5.325 12 C -0.063 4.063 13 C -0.002 4.002 14 H 0.122 0.878 15 C -0.066 4.066 16 N -0.147 5.147 17 C -0.044 4.044 18 C -0.566 4.566 19 H 0.092 0.908 20 C -0.132 4.132 21 N -0.535 5.535 22 Si 0.705 3.295 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.188 1.188 26 C -0.088 4.088 27 C 0.001 3.999 28 H 0.146 0.854 29 H 0.145 0.855 30 H 0.145 0.855 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.056 0.944 34 H 0.111 0.889 35 H 0.052 0.948 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.048 0.952 39 H 0.158 0.842 40 H 0.097 0.903 41 H 0.067 0.933 42 H 0.044 0.956 43 H 0.050 0.950 44 H 0.075 0.925 45 H 0.055 0.945 46 H 0.109 0.891 47 H 0.111 0.889 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.869 2.883 -32.322 32.504 hybrid contribution -1.609 1.904 0.461 2.536 sum 0.260 4.788 -31.861 32.220 Atomic orbital electron populations 1.30603 1.28878 1.11511 1.11403 1.04941 0.77639 0.74071 0.73026 1.93619 1.77465 1.37727 1.85590 1.93615 1.77477 1.61675 1.61702 1.57824 1.84219 1.14749 1.27229 1.21643 1.01710 0.92012 0.84491 1.22696 0.97467 0.90229 0.99111 1.61750 1.59306 1.01959 1.02905 1.22077 0.95611 1.00840 0.88458 1.21908 1.00296 0.95960 0.88466 1.60372 1.09908 1.60271 1.01918 1.22075 1.00326 0.95843 0.88081 1.18948 1.01489 0.83681 0.96085 0.87828 1.28734 0.92501 0.94376 0.90966 1.81050 1.09737 1.13207 1.10673 1.19636 0.97757 0.95020 0.92000 1.21024 1.21914 1.22203 0.91493 0.90787 1.25000 0.95731 0.96728 0.95715 1.69904 1.40961 1.42514 1.00071 0.86812 0.82516 0.82432 0.77763 1.20080 1.21291 1.18832 1.22503 0.97512 0.98076 0.90738 1.21545 1.01779 0.78823 0.97708 0.85438 0.85492 0.85461 0.89787 0.88873 0.94419 0.88927 0.94831 0.89532 0.90042 0.95179 0.84160 0.90341 0.93292 0.95599 0.94966 0.92546 0.94468 0.89138 0.88890 0.89822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -1.86 10.99 101.05 1.11 -0.75 16 2 S 2.61 16.00 6.06 -107.50 -0.65 15.35 16 3 O -0.95 -9.02 16.78 -57.54 -0.97 -9.99 16 4 O -0.95 -8.92 16.79 -57.54 -0.97 -9.89 16 5 N -1.00 -5.72 3.25 -112.97 -0.37 -6.08 16 6 C 0.13 0.71 6.50 -3.37 -0.02 0.68 16 7 C 0.03 0.19 5.48 -3.47 -0.02 0.17 16 8 N -0.53 -3.59 4.63 -234.02 -1.08 -4.68 16 9 C 0.06 0.44 5.22 -3.82 -0.02 0.42 16 10 C 0.06 0.56 5.62 -3.82 -0.02 0.53 16 11 N -0.69 -7.60 6.20 -113.78 -0.71 -8.30 16 12 C 0.07 0.85 5.05 -3.83 -0.02 0.83 16 13 C 0.02 0.33 2.35 -93.41 -0.22 0.11 16 14 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 15 C 0.25 5.05 13.67 -20.72 -0.28 4.77 16 16 N -0.47 -10.49 18.54 42.20 0.78 -9.71 16 17 C -0.01 -0.11 3.49 -27.88 -0.10 -0.20 16 18 C -0.53 -13.98 9.15 -34.44 -0.32 -14.29 16 19 H 0.07 2.15 7.84 -52.48 -0.41 1.74 16 20 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 21 N -0.90 -26.76 13.96 55.43 0.77 -25.99 16 22 Si 0.88 20.34 27.47 -169.99 -4.67 15.67 16 23 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.26 -5.78 6.54 56.52 0.37 -5.41 16 26 C 0.04 0.22 5.62 -3.70 -0.02 0.20 16 27 C 0.13 0.68 6.46 -3.60 -0.02 0.66 16 28 H 0.13 0.23 8.14 -51.92 -0.42 -0.19 16 29 H 0.13 0.21 8.14 -51.92 -0.42 -0.21 16 30 H 0.13 0.23 8.14 -51.92 -0.42 -0.19 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.43 7.18 -51.93 -0.37 0.05 16 33 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 34 H 0.09 0.50 6.16 -51.92 -0.32 0.18 16 35 H 0.03 0.24 8.12 -51.93 -0.42 -0.18 16 36 H 0.09 0.74 7.97 -51.93 -0.41 0.33 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.03 0.24 6.40 -51.93 -0.33 -0.09 16 39 H 0.34 3.30 8.73 -39.29 -0.34 2.96 16 40 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.03 0.55 7.20 -51.93 -0.37 0.18 16 43 H 0.03 0.62 7.57 -51.93 -0.39 0.22 16 44 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 45 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 46 H 0.09 0.45 7.99 -51.93 -0.41 0.04 16 47 H 0.09 0.40 7.19 -51.93 -0.37 0.02 16 48 H 0.08 0.50 8.14 -51.92 -0.42 0.07 16 LS Contribution 399.74 15.07 6.02 6.02 Total: -1.00 -36.35 399.74 -9.86 -46.21 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -7.99 Total: -3.60 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -0.05 Total: -5.01 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: -0.60 Total: -54.76 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -1.93 Total: -19.87 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.67 Total: 15.67 kcal Atomic # 16 Polarization: 16.00 SS G_CDS: -0.65 Total: 15.35 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.35 -9.86 -46.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591729174.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.846 kcal (2) G-P(sol) polarization free energy of solvation -36.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.46 seconds