Wall clock time and date at job start Wed Apr 1 2020 04:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42105 * 110.54275 * 2 1 4 4 O 1.42101 * 110.54298 * 223.25103 * 2 1 3 5 5 N 1.65599 * 104.44825 * 111.62486 * 2 1 3 6 6 C 1.47077 * 120.88240 * 269.72050 * 5 2 1 7 7 C 1.53694 * 108.27431 * 128.75621 * 6 5 2 8 8 N 1.46893 * 109.25658 * 54.08603 * 7 6 5 9 9 C 1.46900 * 111.00047 * 172.60720 * 8 7 6 10 10 C 1.53010 * 109.47011 * 294.29927 * 9 8 7 11 11 N 1.46900 * 109.47011 * 179.97438 * 10 9 8 12 12 C 1.46894 * 110.99788 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.46988 * 179.97438 * 12 11 10 14 14 H 1.09000 * 109.47526 * 305.00047 * 13 12 11 15 15 C 1.47198 * 109.47144 * 65.00436 * 13 12 11 16 16 N 9.72149 * 122.07860 * 180.11422 * 5 1 2 17 17 C 1.53002 * 109.46950 * 184.99889 * 13 12 11 18 18 C 1.50701 * 109.47295 * 175.00163 * 17 13 12 19 19 H 1.08008 * 119.99746 * 359.97438 * 18 17 13 20 20 C 1.37871 * 120.00551 * 180.02562 * 18 17 13 21 21 N 1.31518 * 120.00464 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99729 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47067 * 90.00510 * 22 20 18 24 24 H 1.48504 * 109.47011 * 210.00547 * 22 20 18 25 25 H 1.48495 * 109.47254 * 330.00150 * 22 20 18 26 26 C 1.46903 * 111.26839 * 296.75139 * 8 7 6 27 27 C 1.47075 * 120.87816 * 90.00229 * 5 2 1 28 28 H 1.09003 * 109.47352 * 68.37645 * 1 2 3 29 29 H 1.09004 * 109.47032 * 188.37317 * 1 2 3 30 30 H 1.09000 * 109.47124 * 308.37589 * 1 2 3 31 31 H 1.08999 * 109.62966 * 248.52935 * 6 5 2 32 32 H 1.09003 * 109.62478 * 9.10425 * 6 5 2 33 33 H 1.08998 * 109.64887 * 294.07442 * 7 6 5 34 34 H 1.09008 * 109.41682 * 173.94884 * 7 6 5 35 35 H 1.08995 * 109.47387 * 54.29828 * 9 8 7 36 36 H 1.09007 * 109.47451 * 174.30260 * 9 8 7 37 37 H 1.08993 * 109.46669 * 299.99709 * 10 9 8 38 38 H 1.08994 * 109.47021 * 59.99956 * 10 9 8 39 39 H 1.00898 * 110.99879 * 303.95265 * 11 10 9 40 40 H 1.09003 * 109.47324 * 300.00088 * 12 11 10 41 41 H 1.08999 * 109.47292 * 60.00376 * 12 11 10 42 42 H 1.09000 * 109.47480 * 295.00039 * 17 13 12 43 43 H 1.08995 * 109.47386 * 55.00474 * 17 13 12 44 44 H 0.96994 * 120.00072 * 179.97438 * 21 20 18 45 45 H 1.08998 * 109.49149 * 303.15034 * 26 8 7 46 46 H 1.08998 * 109.49119 * 183.06354 * 26 8 7 47 47 H 1.09000 * 109.63319 * 350.89334 * 27 5 2 48 48 H 1.09009 * 109.63221 * 111.47509 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9118 5 7 2.2272 -0.5910 1.4908 6 6 2.4215 0.3136 2.6341 7 6 1.5765 -0.2055 3.8083 8 7 1.9155 -1.6115 4.0649 9 6 1.2610 -2.0962 5.2874 10 6 1.8262 -1.3509 6.4983 11 7 1.1712 -1.8353 7.7208 12 6 1.6904 -1.1409 8.9066 13 6 0.9856 -1.6705 10.1570 14 1 -0.0932 -1.5740 10.0345 15 6 1.3325 -3.0876 10.3527 16 7 1.6038 -4.1815 10.5033 17 6 1.4347 -0.8625 11.3763 18 6 0.6508 -1.3014 12.5863 19 1 -0.0936 -2.0787 12.4947 20 6 0.8831 -0.7102 13.8099 21 7 0.1987 -1.0929 14.8658 22 14 2.1700 0.6345 13.9682 23 1 1.5369 1.9562 13.7287 24 1 2.7519 0.6045 15.3342 25 1 3.2444 0.4117 12.9676 26 6 1.5765 -2.4599 2.9145 27 6 2.4155 -2.0338 1.7050 28 1 -0.3634 0.3787 -0.9553 29 1 -0.3633 -1.0168 0.1497 30 1 -0.3633 0.6380 0.8056 31 1 3.4746 0.3278 2.9149 32 1 2.0979 1.3190 2.3646 33 1 0.5178 -0.1257 3.5615 34 1 1.7887 0.3880 4.6977 35 1 0.1878 -1.9185 5.2199 36 1 1.4461 -3.1646 5.3996 37 1 2.8994 -1.5287 6.5658 38 1 1.6412 -0.2827 6.3862 39 1 0.1688 -1.7404 7.6558 40 1 2.7627 -1.3179 8.9909 41 1 1.5052 -0.0710 8.8113 42 1 2.4974 -1.0297 11.5517 43 1 1.2588 0.1977 11.1945 44 1 0.3624 -0.6772 15.7267 45 1 0.5179 -2.3487 2.6801 46 1 1.7888 -3.5015 3.1556 47 1 2.0880 -2.5812 0.8212 48 1 3.4681 -2.2410 1.8983 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591729174.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:11 Heat of formation + Delta-G solvation = -61.647650 kcal Electronic energy + Delta-G solvation = -27512.059139 eV Core-core repulsion = 23535.180114 eV Total energy + Delta-G solvation = -3976.879025 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.05763 -38.77358 -38.25206 -37.07869 -36.90460 -35.71419 -35.03514 -33.45828 -32.09827 -30.35331 -30.26944 -28.30270 -26.17141 -24.79949 -23.80094 -23.30632 -22.40710 -21.52639 -19.77426 -18.90967 -18.73107 -18.50999 -17.34402 -17.19363 -16.73545 -16.51819 -16.19564 -15.86887 -15.74477 -15.57318 -15.31195 -15.17346 -14.99061 -14.55194 -14.34912 -14.09234 -13.99787 -13.95060 -13.80507 -13.64115 -13.36041 -13.25799 -13.20759 -13.13178 -12.97217 -12.82530 -12.67295 -12.33938 -12.22230 -12.20962 -12.09075 -12.07592 -11.75537 -11.65956 -11.62807 -11.40455 -11.23282 -10.71591 -10.08602 -9.28439 -9.15747 -8.23316 -6.28773 -0.72833 1.43298 1.47141 1.56966 1.62062 2.08305 2.15437 2.42285 2.73866 2.93970 3.13109 3.13126 3.32362 3.50298 3.63326 4.02506 4.04663 4.05071 4.10216 4.22595 4.23864 4.34967 4.36607 4.38969 4.48370 4.53028 4.65118 4.72204 4.78616 4.81206 4.87320 4.91184 4.96846 5.00341 5.07228 5.12222 5.13502 5.21390 5.26176 5.48376 5.56353 5.65511 6.04593 6.13888 6.19523 6.28313 6.58328 6.79228 6.94251 7.35760 8.93500 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.024222 B = 0.001698 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.677654 B =16484.593640 C =17137.487071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.653 4.653 2 S 2.614 3.386 3 O -0.994 6.994 4 O -0.994 6.994 5 N -1.004 6.004 6 C 0.125 3.875 7 C 0.037 3.963 8 N -0.547 5.547 9 C 0.066 3.934 10 C 0.069 3.931 11 N -0.706 5.706 12 C 0.080 3.920 13 C 0.025 3.975 14 H 0.118 0.882 15 C 0.262 3.738 16 N -0.518 5.518 17 C -0.004 4.004 18 C -0.530 4.530 19 H 0.029 0.971 20 C 0.001 3.999 21 N -0.954 5.954 22 Si 0.949 3.051 23 H -0.256 1.256 24 H -0.297 1.297 25 H -0.238 1.238 26 C 0.043 3.957 27 C 0.126 3.874 28 H 0.142 0.858 29 H 0.145 0.855 30 H 0.145 0.855 31 H 0.072 0.928 32 H 0.103 0.897 33 H 0.051 0.949 34 H 0.096 0.904 35 H 0.042 0.958 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.047 0.953 39 H 0.350 0.650 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.025 0.975 43 H 0.064 0.936 44 H 0.264 0.736 45 H 0.050 0.950 46 H 0.091 0.909 47 H 0.103 0.897 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.378 6.887 -34.081 34.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.806 4.806 2 S 2.712 3.288 3 O -0.984 6.984 4 O -0.985 6.985 5 N -0.842 5.842 6 C 0.000 4.000 7 C -0.093 4.093 8 N -0.272 5.272 9 C -0.062 4.062 10 C -0.060 4.060 11 N -0.339 5.339 12 C -0.051 4.051 13 C 0.003 3.997 14 H 0.136 0.864 15 C -0.054 4.054 16 N -0.196 5.196 17 C -0.043 4.043 18 C -0.568 4.568 19 H 0.048 0.952 20 C -0.196 4.196 21 N -0.595 5.595 22 Si 0.772 3.228 23 H -0.180 1.180 24 H -0.224 1.224 25 H -0.161 1.161 26 C -0.087 4.087 27 C 0.001 3.999 28 H 0.161 0.839 29 H 0.164 0.836 30 H 0.164 0.836 31 H 0.090 0.910 32 H 0.121 0.879 33 H 0.069 0.931 34 H 0.114 0.886 35 H 0.060 0.940 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.065 0.935 39 H 0.168 0.832 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.043 0.957 43 H 0.082 0.918 44 H 0.073 0.927 45 H 0.069 0.931 46 H 0.109 0.891 47 H 0.121 0.879 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.570 4.966 -34.255 34.649 hybrid contribution -1.617 1.173 1.023 2.244 sum -0.047 6.139 -33.233 33.795 Atomic orbital electron populations 1.30390 1.23736 1.13372 1.13115 1.04566 0.79282 0.72559 0.72399 1.93563 1.79495 1.39364 1.86024 1.93560 1.79499 1.62382 1.63050 1.57692 1.84818 1.14801 1.26854 1.21675 1.01246 0.92525 0.84578 1.22712 0.98083 0.89441 0.99039 1.61715 1.59704 1.02782 1.03033 1.21915 0.95996 0.99822 0.88424 1.21855 0.99268 0.97017 0.87858 1.60272 1.10721 1.60708 1.02188 1.21894 0.99390 0.97168 0.86617 1.19081 1.02833 0.81064 0.96715 0.86411 1.29517 0.91194 0.95077 0.89605 1.81048 1.11471 1.14846 1.12199 1.19591 0.96588 0.97137 0.90974 1.21419 1.21053 1.20458 0.93881 0.95244 1.26058 0.98343 0.99854 0.95315 1.70091 1.43667 1.44884 1.00871 0.85683 0.79964 0.79460 0.77715 1.18043 1.22405 1.16077 1.22516 0.98159 0.97903 0.90075 1.21566 1.01260 0.78820 0.98281 0.83934 0.83643 0.83639 0.90967 0.87930 0.93115 0.88608 0.93993 0.90944 0.91444 0.93484 0.83157 0.90811 0.90412 0.95655 0.91810 0.92722 0.93138 0.89060 0.87899 0.91047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -1.41 10.99 113.37 1.25 -0.17 16 2 S 2.61 29.37 6.06 -56.49 -0.34 29.03 16 3 O -0.99 -18.46 16.78 -127.65 -2.14 -20.60 16 4 O -0.99 -18.40 16.79 -127.65 -2.14 -20.54 16 5 N -1.00 -10.22 3.25 -511.34 -1.66 -11.88 16 6 C 0.13 1.21 6.50 86.50 0.56 1.77 16 7 C 0.04 0.31 5.48 86.54 0.47 0.79 16 8 N -0.55 -6.25 4.63 -894.30 -4.14 -10.39 16 9 C 0.07 0.86 5.22 86.31 0.45 1.31 16 10 C 0.07 1.03 5.62 86.31 0.48 1.51 16 11 N -0.71 -13.55 6.20 -513.90 -3.19 -16.74 16 12 C 0.08 1.75 5.05 86.30 0.44 2.18 16 13 C 0.02 0.78 2.35 -12.60 -0.03 0.75 16 14 H 0.12 3.40 8.14 -2.39 -0.02 3.38 16 15 C 0.26 10.40 13.67 89.43 1.22 11.63 16 16 N -0.52 -23.34 18.54 20.02 0.37 -22.97 16 17 C 0.00 -0.15 3.49 29.85 0.10 -0.05 16 18 C -0.53 -28.07 9.15 25.60 0.23 -27.84 16 19 H 0.03 1.77 7.84 -2.91 -0.02 1.74 16 20 C 0.00 0.05 5.47 84.65 0.46 0.51 16 21 N -0.95 -58.56 13.96 21.45 0.30 -58.26 16 22 Si 0.95 40.87 27.47 68.60 1.88 42.75 16 23 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 24 H -0.30 -13.24 7.11 99.48 0.71 -12.53 16 25 H -0.24 -9.16 6.54 99.48 0.65 -8.51 16 26 C 0.04 0.38 5.62 86.38 0.49 0.87 16 27 C 0.13 1.22 6.46 86.35 0.56 1.78 16 28 H 0.14 0.01 8.14 -2.39 -0.02 0.00 16 29 H 0.15 -0.10 8.14 -2.39 -0.02 -0.12 16 30 H 0.15 -0.09 8.14 -2.39 -0.02 -0.11 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.10 0.78 7.18 -2.39 -0.02 0.77 16 33 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 34 H 0.10 0.75 6.16 -2.38 -0.01 0.74 16 35 H 0.04 0.47 8.12 -2.39 -0.02 0.46 16 36 H 0.07 1.14 7.97 -2.38 -0.02 1.12 16 37 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.05 0.56 6.40 -2.39 -0.02 0.55 16 39 H 0.35 5.69 8.73 -89.70 -0.78 4.91 16 40 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.03 1.00 7.20 -2.39 -0.02 0.98 16 43 H 0.06 2.15 7.57 -2.39 -0.02 2.13 16 44 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 45 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 46 H 0.09 0.79 7.99 -2.39 -0.02 0.77 16 47 H 0.10 0.77 7.19 -2.39 -0.02 0.76 16 48 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 Total: -1.00 -81.87 399.74 -4.26 -86.13 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 0.12 Total: 8.42 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: 6.69 Total: -4.95 kcal Atomic # 7 Polarization: -111.92 SS G_CDS: -8.32 Total: -120.24 kcal Atomic # 8 Polarization: -36.85 SS G_CDS: -4.29 Total: -41.14 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 1.88 Total: 42.75 kcal Atomic # 16 Polarization: 29.37 SS G_CDS: -0.34 Total: 29.03 kcal Total: -81.87 -4.26 -86.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591729174.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.478 kcal (2) G-P(sol) polarization free energy of solvation -81.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds