Wall clock time and date at job start Wed Apr 1 2020 04:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46891 * 111.00071 * 2 1 4 4 C 1.50706 * 109.47049 * 66.05170 * 3 2 1 5 5 H 1.07995 * 119.99965 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99874 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00404 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 119.99825 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47094 * 60.00182 * 8 6 4 10 10 H 1.48495 * 109.47291 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.46859 * 300.00109 * 8 6 4 12 12 C 1.46905 * 110.99713 * 236.04897 * 2 1 3 13 13 C 1.53000 * 109.47123 * 293.95674 * 12 2 1 14 14 H 1.09002 * 109.47398 * 59.99875 * 13 12 2 15 15 O 1.42903 * 109.46726 * 299.99631 * 13 12 2 16 16 C 1.53002 * 109.47233 * 180.02562 * 13 12 2 17 17 N 1.46896 * 109.47181 * 184.99855 * 16 13 12 18 18 C 1.46904 * 111.00016 * 179.97438 * 17 16 13 19 19 H 1.08998 * 109.46811 * 325.00156 * 18 17 16 20 20 C 1.53005 * 109.46972 * 84.99766 * 18 17 16 21 21 O 1.42901 * 109.47106 * 65.00189 * 20 18 17 22 22 C 1.50696 * 109.47120 * 204.99932 * 18 17 16 23 23 C 1.38224 * 119.98754 * 339.99740 * 22 18 17 24 24 C 1.38193 * 120.04825 * 180.02562 * 23 22 18 25 25 C 1.38492 * 120.02552 * 359.97438 * 24 23 22 26 26 F 1.35098 * 120.00927 * 179.97438 * 25 24 23 27 27 C 1.38394 * 119.97441 * 359.97438 * 25 24 23 28 28 C 1.38444 * 119.95169 * 359.77400 * 27 25 24 29 29 F 1.35098 * 120.01650 * 180.22924 * 28 27 25 30 30 H 1.09002 * 109.47298 * 183.95531 * 1 2 3 31 31 H 1.09011 * 109.46893 * 303.94641 * 1 2 3 32 32 H 1.08994 * 109.47518 * 63.94659 * 1 2 3 33 33 H 1.09008 * 109.47131 * 186.04936 * 3 2 1 34 34 H 1.08997 * 109.47884 * 306.05210 * 3 2 1 35 35 H 0.96997 * 120.00581 * 179.97438 * 7 6 4 36 36 H 1.08992 * 109.47078 * 173.95361 * 12 2 1 37 37 H 1.09004 * 109.46829 * 53.95008 * 12 2 1 38 38 H 0.96700 * 114.00234 * 300.00043 * 15 13 12 39 39 H 1.09008 * 109.46873 * 304.99791 * 16 13 12 40 40 H 1.08997 * 109.47047 * 64.99480 * 16 13 12 41 41 H 1.00903 * 111.00011 * 303.95191 * 17 16 13 42 42 H 1.08992 * 109.47089 * 184.99964 * 20 18 17 43 43 H 1.09003 * 109.46931 * 305.00162 * 20 18 17 44 44 H 0.96695 * 114.00211 * 180.02562 * 21 20 18 45 45 H 1.07999 * 119.97502 * 359.97438 * 23 22 18 46 46 H 1.08001 * 119.98688 * 180.02562 * 24 23 22 47 47 H 1.07999 * 120.02320 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.6370 2.0470 1.2986 5 1 1.0741 1.5114 2.0486 6 6 2.0278 3.3490 1.5290 7 7 2.7137 4.0012 0.6159 8 14 1.5829 4.1867 3.1383 9 1 2.1737 3.4291 4.2706 10 1 2.1152 5.5730 3.1384 11 1 0.1056 4.2242 3.2849 12 6 1.9954 -0.7660 -1.1377 13 6 1.6313 -2.2426 -0.9705 14 1 0.5470 -2.3475 -0.9325 15 8 2.2008 -2.7392 0.2424 16 6 2.1801 -3.0405 -2.1551 17 7 1.7296 -4.4352 -2.0568 18 6 2.2381 -5.2331 -3.1806 19 1 2.2707 -4.6163 -4.0787 20 6 3.6466 -5.7338 -2.8544 21 8 3.5871 -6.6352 -1.7471 22 6 1.3274 -6.4110 -3.4130 23 6 0.4798 -6.8378 -2.4080 24 6 -0.3555 -7.9182 -2.6196 25 6 -0.3446 -8.5742 -3.8392 26 9 -1.1609 -9.6307 -4.0455 27 6 0.5029 -8.1471 -4.8465 28 6 1.3355 -7.0614 -4.6353 29 9 2.1599 -6.6404 -5.6193 30 1 -0.3634 -1.0252 0.0709 31 1 -0.3633 0.5739 0.8526 32 1 -0.3634 0.4513 -0.9232 33 1 3.0798 1.3443 -0.1083 34 1 1.5611 1.9274 -0.8308 35 1 2.9883 4.9172 0.7779 36 1 3.0796 -0.6611 -1.1758 37 1 1.5609 -0.3872 -2.0628 38 1 3.1652 -2.6772 0.2784 39 1 1.8158 -2.6057 -3.0860 40 1 3.2695 -3.0086 -2.1411 41 1 1.9996 -4.8410 -1.1734 42 1 4.0585 -6.2501 -3.7214 43 1 4.2834 -4.8867 -2.5995 44 1 4.4462 -6.9927 -1.4843 45 1 0.4710 -6.3271 -1.4564 46 1 -1.0176 -8.2506 -1.8337 47 1 0.5123 -8.6583 -5.7978 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596066094.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:04 Heat of formation + Delta-G solvation = -154.215047 kcal Electronic energy + Delta-G solvation = -29990.563685 eV Core-core repulsion = 25423.537498 eV Total energy + Delta-G solvation = -4567.026187 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.34688 -49.28450 -39.79993 -38.35353 -37.43645 -35.79838 -34.93417 -32.53557 -31.82798 -31.11138 -29.52715 -28.01738 -27.02939 -25.73955 -24.02948 -23.71113 -22.89511 -21.37002 -21.05915 -20.14437 -18.56272 -18.05019 -17.36364 -16.77181 -16.51056 -16.31685 -16.18900 -16.01308 -15.66362 -15.62088 -15.28236 -14.92890 -14.84561 -14.70443 -14.40813 -14.12154 -14.02030 -13.64843 -13.34362 -13.21065 -12.80503 -12.65717 -12.40953 -12.37295 -11.91849 -11.87043 -11.70341 -11.60392 -11.34200 -11.12752 -10.87917 -10.76401 -10.66560 -10.45949 -10.30327 -10.02460 -9.64353 -9.34159 -9.14373 -8.93955 -8.66752 -8.43555 -7.20316 -6.02902 -4.03912 0.64129 0.75422 3.06940 3.34203 3.37701 3.41229 3.50697 3.59278 3.93985 4.11300 4.24674 4.34325 4.42950 4.56600 4.62273 4.66803 4.85053 4.90258 4.98003 4.98202 5.10081 5.20978 5.28323 5.34370 5.45419 5.50377 5.58613 5.60653 5.63657 5.71407 5.84597 5.98121 6.05456 6.20609 6.31731 6.39557 6.46148 6.72010 6.78739 7.15167 7.21798 7.26298 7.32463 7.79703 7.93946 8.09577 8.20191 8.55174 9.03923 9.60236 11.07989 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.022000 B = 0.001887 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.415290 B =14834.631793 C =15221.406987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.529 5.529 3 C 0.193 3.807 4 C -0.505 4.505 5 H 0.064 0.936 6 C 0.054 3.946 7 N -0.901 5.901 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.025 3.975 13 C 0.115 3.885 14 H 0.104 0.896 15 O -0.545 6.545 16 C 0.026 3.974 17 N -0.674 5.674 18 C 0.130 3.870 19 H 0.102 0.898 20 C 0.048 3.952 21 O -0.564 6.564 22 C -0.102 4.102 23 C -0.022 4.022 24 C -0.165 4.165 25 C 0.122 3.878 26 F -0.135 7.135 27 C -0.196 4.196 28 C 0.125 3.875 29 F -0.134 7.134 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.008 0.992 33 H 0.027 0.973 34 H -0.011 1.011 35 H 0.261 0.739 36 H 0.068 0.932 37 H 0.029 0.971 38 H 0.367 0.633 39 H 0.080 0.920 40 H 0.034 0.966 41 H 0.361 0.639 42 H 0.051 0.949 43 H 0.053 0.947 44 H 0.382 0.618 45 H 0.151 0.849 46 H 0.142 0.858 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.103 -25.814 -11.371 28.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.253 5.253 3 C 0.068 3.932 4 C -0.544 4.544 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.727 3.273 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.203 1.203 12 C -0.105 4.105 13 C 0.055 3.945 14 H 0.122 0.878 15 O -0.348 6.348 16 C -0.104 4.104 17 N -0.307 5.307 18 C 0.020 3.980 19 H 0.120 0.880 20 C -0.031 4.031 21 O -0.369 6.369 22 C -0.104 4.104 23 C -0.041 4.041 24 C -0.184 4.184 25 C 0.103 3.897 26 F -0.114 7.114 27 C -0.215 4.215 28 C 0.105 3.895 29 F -0.112 7.112 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.027 0.973 33 H 0.045 0.955 34 H 0.007 0.993 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.047 0.953 38 H 0.213 0.787 39 H 0.098 0.902 40 H 0.052 0.948 41 H 0.182 0.818 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.229 0.771 45 H 0.169 0.831 46 H 0.159 0.841 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.526 -25.709 -11.203 28.085 hybrid contribution 1.735 0.813 -0.334 1.944 sum 0.209 -24.896 -11.537 27.440 Atomic orbital electron populations 1.22252 0.88897 0.99696 1.00371 1.62021 1.06928 1.17361 1.39004 1.19735 0.95190 0.81663 0.96618 1.21132 1.34719 0.96868 1.01688 0.91827 1.25001 0.95335 0.97365 0.97041 1.69945 1.38436 1.11500 1.34164 0.86540 0.78723 0.78252 0.83776 1.20126 1.21416 1.20271 1.22700 1.00342 0.93871 0.93596 1.21968 0.99058 0.90885 0.82636 0.87795 1.86607 1.24840 1.84827 1.38549 1.22776 0.97812 0.88930 1.00849 1.60406 1.62720 1.01841 1.05703 1.20434 0.89430 0.91905 0.96280 0.87986 1.22837 0.97546 0.93044 0.89703 1.86460 1.35625 1.64035 1.50774 1.19711 0.99977 0.98288 0.92424 1.20767 0.91157 0.92947 0.99182 1.21289 1.02657 0.97925 0.96539 1.17317 0.91391 0.86559 0.94459 1.91521 1.70369 1.54048 1.95426 1.20897 0.99762 0.99638 1.01245 1.17105 0.91800 0.95080 0.85476 1.91503 1.69868 1.89198 1.60636 0.93329 0.90730 0.97343 0.95468 0.99332 0.92910 0.91390 0.95297 0.78703 0.90176 0.94777 0.81798 0.93069 0.92839 0.77129 0.83130 0.84057 0.83733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 9.14 60.06 0.55 1.27 16 2 N -0.53 -11.27 4.62 -244.37 -1.13 -12.40 16 3 C 0.19 5.01 4.72 -4.98 -0.02 4.98 16 4 C -0.51 -14.25 8.46 -34.44 -0.29 -14.54 16 5 H 0.06 1.79 7.12 -52.49 -0.37 1.41 16 6 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16 7 N -0.90 -26.73 13.29 55.43 0.74 -26.00 16 8 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 C 0.02 0.41 4.62 -3.82 -0.02 0.39 16 13 C 0.11 1.53 3.08 -26.73 -0.08 1.45 16 14 H 0.10 1.51 6.55 -51.93 -0.34 1.17 16 15 O -0.54 -7.77 12.72 -35.23 -0.45 -8.22 16 16 C 0.03 0.27 5.15 -3.83 -0.02 0.25 16 17 N -0.67 -6.49 5.08 -107.95 -0.55 -7.04 16 18 C 0.13 1.13 2.35 -68.86 -0.16 0.97 16 19 H 0.10 0.88 7.59 -51.93 -0.39 0.49 16 20 C 0.05 0.35 6.70 37.16 0.25 0.60 16 21 O -0.56 -4.17 12.47 -35.23 -0.44 -4.61 16 22 C -0.10 -0.95 4.62 -104.55 -0.48 -1.43 16 23 C -0.02 -0.20 9.28 -39.60 -0.37 -0.57 16 24 C -0.17 -1.40 10.03 -39.50 -0.40 -1.79 16 25 C 0.12 1.11 7.30 -39.43 -0.29 0.82 16 26 F -0.14 -1.29 17.27 2.25 0.04 -1.25 16 27 C -0.20 -1.71 10.01 -39.45 -0.39 -2.11 16 28 C 0.13 1.17 7.24 -39.43 -0.29 0.88 16 29 F -0.13 -1.27 16.65 2.25 0.04 -1.23 16 30 H 0.05 0.84 6.47 -51.93 -0.34 0.50 16 31 H 0.07 1.59 6.76 -51.92 -0.35 1.24 16 32 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 33 H 0.03 0.75 7.93 -51.92 -0.41 0.34 16 34 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.07 1.11 7.93 -51.93 -0.41 0.70 16 37 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 38 H 0.37 4.27 9.04 45.56 0.41 4.68 16 39 H 0.08 0.81 8.06 -51.92 -0.42 0.39 16 40 H 0.03 0.32 7.36 -51.93 -0.38 -0.06 16 41 H 0.36 3.67 7.03 -39.29 -0.28 3.39 16 42 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.05 0.37 7.35 -51.93 -0.38 -0.02 16 44 H 0.38 1.38 9.12 45.56 0.42 1.80 16 45 H 0.15 1.34 6.83 -52.49 -0.36 0.98 16 46 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 47 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 393.23 15.07 5.93 5.93 Total: -1.00 -31.97 393.23 -8.24 -40.21 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -5.28 Total: 5.31 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -2.11 Total: -7.39 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: -0.94 Total: -45.43 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: -0.89 Total: -12.83 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.08 Total: -2.49 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.97 -8.24 -40.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596066094.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.006 kcal (2) G-P(sol) polarization free energy of solvation -31.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds