Wall clock time and date at job start Wed Apr 1 2020 04:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99793 * 2 1 4 4 C 1.50696 * 109.47351 * 293.95574 * 3 2 1 5 5 H 1.08007 * 119.99780 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00506 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00248 * 180.02562 * 6 4 3 8 8 Si 1.86802 * 119.99357 * 359.97438 * 6 4 3 9 9 H 1.48499 * 109.46811 * 90.00524 * 8 6 4 10 10 H 1.48502 * 109.46643 * 209.99901 * 8 6 4 11 11 H 1.48499 * 109.47300 * 329.99977 * 8 6 4 12 12 C 1.46898 * 111.00443 * 123.95328 * 2 1 3 13 13 C 1.53004 * 109.46619 * 66.04574 * 12 2 1 14 14 H 1.08992 * 109.47535 * 304.99943 * 13 12 2 15 15 O 1.42897 * 109.47256 * 65.00537 * 13 12 2 16 16 C 1.52998 * 109.46799 * 184.99872 * 13 12 2 17 17 N 1.46903 * 109.47302 * 179.97438 * 16 13 12 18 18 C 1.46900 * 111.00131 * 180.02562 * 17 16 13 19 19 H 1.08994 * 109.47179 * 35.00605 * 18 17 16 20 20 C 1.52991 * 109.47082 * 275.00245 * 18 17 16 21 21 O 1.42900 * 109.47678 * 295.00185 * 20 18 17 22 22 C 1.50698 * 109.46745 * 155.00312 * 18 17 16 23 23 C 1.38234 * 119.99040 * 24.72850 * 22 18 17 24 24 C 1.38188 * 120.05081 * 179.76548 * 23 22 18 25 25 C 1.38496 * 120.02538 * 0.50697 * 24 23 22 26 26 F 1.35097 * 120.01181 * 179.76443 * 25 24 23 27 27 C 1.38401 * 119.97227 * 359.74577 * 25 24 23 28 28 C 1.38439 * 119.95236 * 359.97438 * 27 25 24 29 29 F 1.35101 * 120.01175 * 180.02562 * 28 27 25 30 30 H 1.09002 * 109.47401 * 59.99808 * 1 2 3 31 31 H 1.09001 * 109.46874 * 299.99821 * 1 2 3 32 32 H 1.09004 * 109.46970 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46995 * 53.95554 * 3 2 1 34 34 H 1.09001 * 109.46848 * 173.95560 * 3 2 1 35 35 H 0.96999 * 119.99895 * 180.02562 * 7 6 4 36 36 H 1.08994 * 109.47410 * 186.04624 * 12 2 1 37 37 H 1.08999 * 109.47216 * 306.04953 * 12 2 1 38 38 H 0.96701 * 114.00549 * 59.99438 * 15 13 12 39 39 H 1.08996 * 109.47622 * 300.00336 * 16 13 12 40 40 H 1.09009 * 109.47203 * 60.00381 * 16 13 12 41 41 H 1.00904 * 111.00240 * 303.96453 * 17 16 13 42 42 H 1.09002 * 109.47585 * 55.00548 * 20 18 17 43 43 H 1.09005 * 109.47433 * 175.00020 * 20 18 17 44 44 H 0.96697 * 114.00684 * 180.02562 * 21 20 18 45 45 H 1.08002 * 119.97020 * 0.02562 * 23 22 18 46 46 H 1.07997 * 119.98718 * 180.24924 * 24 23 22 47 47 H 1.08000 * 120.02399 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0738 1.5116 -2.0484 6 6 2.0275 3.3493 -1.5289 7 7 1.7142 3.9391 -2.6618 8 14 3.0007 4.2759 -0.2313 9 1 4.4531 4.0625 -0.4557 10 1 2.6934 5.7258 -0.3237 11 1 2.6293 3.7760 1.1168 12 6 1.9956 -0.7659 1.1375 13 6 1.6315 -2.2426 0.9702 14 1 0.5533 -2.3389 0.8432 15 8 2.2957 -2.7695 -0.1801 16 6 2.0701 -3.0199 2.2129 17 7 1.7201 -4.4376 2.0526 18 6 2.1267 -5.2166 3.2299 19 1 2.0066 -4.6090 4.1268 20 6 3.5927 -5.6300 3.0864 21 8 3.7302 -6.5209 1.9776 22 6 1.2657 -6.4485 3.3387 23 6 0.6597 -6.9699 2.2109 24 6 -0.1262 -8.1023 2.3085 25 6 -0.3161 -8.7102 3.5383 26 9 -1.0883 -9.8146 3.6342 27 6 0.2859 -8.1861 4.6690 28 6 1.0777 -7.0549 4.5691 29 9 1.6663 -6.5426 5.6720 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.5611 1.9274 0.8309 34 1 3.0797 1.3445 0.1082 35 1 1.9894 4.8549 -2.8240 36 1 3.0798 -0.6610 1.1755 37 1 1.5612 -0.3873 2.0628 38 1 3.2602 -2.7166 -0.1361 39 1 3.1484 -2.9236 2.3400 40 1 1.5636 -2.6180 3.0905 41 1 0.7341 -4.5481 1.8691 42 1 4.2054 -4.7442 2.9187 43 1 3.9199 -6.1308 3.9976 44 1 4.6357 -6.8249 1.8271 45 1 0.8040 -6.4941 1.2522 46 1 -0.5959 -8.5111 1.4261 47 1 0.1387 -8.6597 5.6284 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596066101.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:12 Heat of formation + Delta-G solvation = -144.134477 kcal Electronic energy + Delta-G solvation = -30040.090239 eV Core-core repulsion = 25473.501179 eV Total energy + Delta-G solvation = -4566.589060 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.44972 -49.38094 -39.87955 -38.34961 -37.28658 -35.88613 -34.98971 -32.48380 -31.87069 -31.22965 -29.61220 -28.25812 -27.52271 -25.89166 -24.05189 -23.75397 -22.82948 -21.27011 -20.90389 -20.10595 -18.65592 -17.96404 -17.37135 -17.14942 -16.90915 -16.43321 -16.18316 -15.87784 -15.73917 -15.67716 -15.22337 -14.86843 -14.80495 -14.76292 -14.36411 -14.24977 -14.01958 -13.79291 -13.52049 -13.20856 -13.07823 -12.72304 -12.52540 -12.38353 -12.12038 -11.99923 -11.72566 -11.63037 -11.42002 -11.23003 -11.01485 -10.80167 -10.54136 -10.31171 -10.21566 -10.02827 -9.55434 -9.46319 -9.24102 -9.02756 -8.68533 -8.57587 -7.34992 -6.05209 -4.02407 0.50707 0.62200 2.94469 3.26401 3.33902 3.34845 3.42275 3.57507 3.87403 4.05445 4.15862 4.23565 4.40599 4.46200 4.55163 4.74135 4.78911 4.84658 4.98526 5.10393 5.10871 5.21304 5.21547 5.27532 5.35045 5.43704 5.48148 5.49157 5.53405 5.56411 5.72317 5.83400 5.90146 6.06180 6.19159 6.28764 6.34395 6.65394 6.67228 6.83384 6.97040 7.02777 7.44052 7.57263 7.87934 7.98089 8.11678 8.65749 9.04573 9.56173 11.07959 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.021327 B = 0.001962 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.586677 B =14264.452716 C =14633.592502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.520 5.520 3 C 0.162 3.838 4 C -0.507 4.507 5 H 0.082 0.918 6 C 0.067 3.933 7 N -0.900 5.900 8 Si 0.875 3.125 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.270 1.270 12 C 0.021 3.979 13 C 0.118 3.882 14 H 0.094 0.906 15 O -0.532 6.532 16 C 0.024 3.976 17 N -0.660 5.660 18 C 0.129 3.871 19 H 0.069 0.931 20 C 0.095 3.905 21 O -0.552 6.552 22 C -0.123 4.123 23 C -0.031 4.031 24 C -0.163 4.163 25 C 0.126 3.874 26 F -0.133 7.133 27 C -0.195 4.195 28 C 0.129 3.871 29 F -0.132 7.132 30 H 0.080 0.920 31 H 0.009 0.991 32 H 0.049 0.951 33 H -0.014 1.014 34 H 0.022 0.978 35 H 0.263 0.737 36 H 0.070 0.930 37 H 0.027 0.973 38 H 0.368 0.632 39 H 0.076 0.924 40 H 0.037 0.963 41 H 0.345 0.655 42 H 0.052 0.948 43 H 0.043 0.957 44 H 0.374 0.626 45 H 0.158 0.842 46 H 0.144 0.856 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.542 -25.824 16.947 30.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.243 5.243 3 C 0.036 3.964 4 C -0.546 4.546 5 H 0.100 0.900 6 C -0.134 4.134 7 N -0.539 5.539 8 Si 0.703 3.297 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.194 1.194 12 C -0.108 4.108 13 C 0.058 3.942 14 H 0.112 0.888 15 O -0.335 6.335 16 C -0.106 4.106 17 N -0.293 5.293 18 C 0.020 3.980 19 H 0.086 0.914 20 C 0.016 3.984 21 O -0.356 6.356 22 C -0.124 4.124 23 C -0.049 4.049 24 C -0.182 4.182 25 C 0.107 3.893 26 F -0.112 7.112 27 C -0.215 4.215 28 C 0.110 3.890 29 F -0.110 7.110 30 H 0.098 0.902 31 H 0.028 0.972 32 H 0.068 0.932 33 H 0.004 0.996 34 H 0.040 0.960 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.045 0.955 38 H 0.214 0.786 39 H 0.094 0.906 40 H 0.055 0.945 41 H 0.165 0.835 42 H 0.070 0.930 43 H 0.061 0.939 44 H 0.220 0.780 45 H 0.176 0.824 46 H 0.162 0.838 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.007 -26.036 15.870 30.492 hybrid contribution 0.785 1.272 2.756 3.135 sum 0.792 -24.764 18.626 30.997 Atomic orbital electron populations 1.22287 0.88342 0.99521 1.01110 1.61853 1.07276 1.16055 1.39135 1.20199 0.94774 0.84142 0.97282 1.21036 1.35538 0.97150 1.00848 0.90030 1.24912 0.95873 0.97377 0.95286 1.69892 1.46879 1.13278 1.23836 0.86867 0.80904 0.79322 0.82657 1.20152 1.21201 1.19445 1.22781 1.00513 0.94295 0.93251 1.21841 0.97749 0.90309 0.84345 0.88782 1.86618 1.22879 1.83786 1.40236 1.22842 1.01679 0.87835 0.98275 1.60449 1.23777 1.08448 1.36598 1.20430 0.93277 0.91042 0.93300 0.91367 1.22051 0.94620 0.92953 0.88801 1.86577 1.32814 1.65631 1.50540 1.19874 1.01106 0.99498 0.91959 1.20908 0.91800 0.93215 0.98950 1.21308 1.02286 0.97799 0.96769 1.17348 0.92958 0.85044 0.93963 1.91533 1.72464 1.50212 1.96954 1.20937 1.02243 0.98382 0.99931 1.17122 0.95607 0.93791 0.82528 1.91517 1.81911 1.86090 1.51498 0.90166 0.97219 0.93217 0.99616 0.95989 0.92673 0.91116 0.95490 0.78567 0.90566 0.94479 0.83516 0.93021 0.93881 0.78004 0.82444 0.83814 0.83573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.68 9.17 60.07 0.55 1.23 16 2 N -0.52 -10.70 4.70 -244.37 -1.15 -11.85 16 3 C 0.16 3.92 3.79 -4.97 -0.02 3.90 16 4 C -0.51 -14.46 9.07 -34.44 -0.31 -14.78 16 5 H 0.08 2.55 7.35 -52.48 -0.39 2.16 16 6 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 7 N -0.90 -27.61 13.96 55.43 0.77 -26.83 16 8 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 12 C 0.02 0.34 4.60 -3.82 -0.02 0.32 16 13 C 0.12 1.52 3.13 -26.73 -0.08 1.44 16 14 H 0.09 1.26 6.26 -51.93 -0.33 0.94 16 15 O -0.53 -7.83 13.15 -35.23 -0.46 -8.30 16 16 C 0.02 0.23 5.15 -3.82 -0.02 0.21 16 17 N -0.66 -6.14 5.38 -107.96 -0.58 -6.72 16 18 C 0.13 1.10 2.40 -68.87 -0.17 0.93 16 19 H 0.07 0.57 7.45 -51.93 -0.39 0.18 16 20 C 0.09 0.75 6.79 37.15 0.25 1.00 16 21 O -0.55 -4.72 12.88 -35.23 -0.45 -5.18 16 22 C -0.12 -1.06 4.53 -104.54 -0.47 -1.53 16 23 C -0.03 -0.25 8.60 -39.60 -0.34 -0.59 16 24 C -0.16 -1.25 10.03 -39.50 -0.40 -1.64 16 25 C 0.13 1.05 7.30 -39.43 -0.29 0.76 16 26 F -0.13 -1.19 17.27 2.25 0.04 -1.15 16 27 C -0.20 -1.57 10.01 -39.45 -0.39 -1.97 16 28 C 0.13 1.13 7.24 -39.43 -0.29 0.84 16 29 F -0.13 -1.20 16.57 2.25 0.04 -1.16 16 30 H 0.08 1.72 6.86 -51.93 -0.36 1.36 16 31 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.05 0.81 6.21 -51.93 -0.32 0.49 16 33 H -0.01 -0.34 7.18 -51.93 -0.37 -0.71 16 34 H 0.02 0.53 7.36 -51.93 -0.38 0.15 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.07 1.07 7.93 -51.93 -0.41 0.66 16 37 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 38 H 0.37 4.51 9.05 45.56 0.41 4.92 16 39 H 0.08 0.71 7.36 -51.93 -0.38 0.33 16 40 H 0.04 0.35 8.05 -51.92 -0.42 -0.07 16 41 H 0.34 3.13 7.25 -39.29 -0.28 2.84 16 42 H 0.05 0.39 7.36 -51.93 -0.38 0.01 16 43 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.37 1.77 9.12 45.56 0.42 2.19 16 45 H 0.16 1.31 6.96 -52.49 -0.37 0.95 16 46 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 47 H 0.15 0.95 8.06 -52.49 -0.42 0.52 16 LS Contribution 389.96 15.07 5.88 5.88 Total: -1.00 -33.24 389.96 -7.91 -41.15 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -5.23 Total: 5.45 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -2.09 Total: -8.03 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: -0.96 Total: -45.40 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -0.92 Total: -13.47 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.08 Total: -2.31 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.24 -7.91 -41.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596066101.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.984 kcal (2) G-P(sol) polarization free energy of solvation -33.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds