Wall clock time and date at job start Wed Apr 1 2020 04:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99793 * 2 1 4 4 C 1.50696 * 109.47351 * 293.95574 * 3 2 1 5 5 H 1.08007 * 119.99780 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00506 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00248 * 180.02562 * 6 4 3 8 8 Si 1.86802 * 119.99357 * 359.97438 * 6 4 3 9 9 H 1.48499 * 109.46811 * 90.00524 * 8 6 4 10 10 H 1.48502 * 109.46643 * 209.99901 * 8 6 4 11 11 H 1.48499 * 109.47300 * 329.99977 * 8 6 4 12 12 C 1.46898 * 111.00443 * 123.95328 * 2 1 3 13 13 C 1.53004 * 109.46619 * 66.04574 * 12 2 1 14 14 H 1.08992 * 109.47535 * 304.99943 * 13 12 2 15 15 O 1.42897 * 109.47256 * 65.00537 * 13 12 2 16 16 C 1.52998 * 109.46799 * 184.99872 * 13 12 2 17 17 N 1.46903 * 109.47302 * 179.97438 * 16 13 12 18 18 C 1.46900 * 111.00131 * 180.02562 * 17 16 13 19 19 H 1.08994 * 109.47179 * 35.00605 * 18 17 16 20 20 C 1.52991 * 109.47082 * 275.00245 * 18 17 16 21 21 O 1.42900 * 109.47678 * 295.00185 * 20 18 17 22 22 C 1.50698 * 109.46745 * 155.00312 * 18 17 16 23 23 C 1.38234 * 119.99040 * 24.72850 * 22 18 17 24 24 C 1.38188 * 120.05081 * 179.76548 * 23 22 18 25 25 C 1.38496 * 120.02538 * 0.50697 * 24 23 22 26 26 F 1.35097 * 120.01181 * 179.76443 * 25 24 23 27 27 C 1.38401 * 119.97227 * 359.74577 * 25 24 23 28 28 C 1.38439 * 119.95236 * 359.97438 * 27 25 24 29 29 F 1.35101 * 120.01175 * 180.02562 * 28 27 25 30 30 H 1.09002 * 109.47401 * 59.99808 * 1 2 3 31 31 H 1.09001 * 109.46874 * 299.99821 * 1 2 3 32 32 H 1.09004 * 109.46970 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46995 * 53.95554 * 3 2 1 34 34 H 1.09001 * 109.46848 * 173.95560 * 3 2 1 35 35 H 0.96999 * 119.99895 * 180.02562 * 7 6 4 36 36 H 1.08994 * 109.47410 * 186.04624 * 12 2 1 37 37 H 1.08999 * 109.47216 * 306.04953 * 12 2 1 38 38 H 0.96701 * 114.00549 * 59.99438 * 15 13 12 39 39 H 1.08996 * 109.47622 * 300.00336 * 16 13 12 40 40 H 1.09009 * 109.47203 * 60.00381 * 16 13 12 41 41 H 1.00904 * 111.00240 * 303.96453 * 17 16 13 42 42 H 1.09002 * 109.47585 * 55.00548 * 20 18 17 43 43 H 1.09005 * 109.47433 * 175.00020 * 20 18 17 44 44 H 0.96697 * 114.00684 * 180.02562 * 21 20 18 45 45 H 1.08002 * 119.97020 * 0.02562 * 23 22 18 46 46 H 1.07997 * 119.98718 * 180.24924 * 24 23 22 47 47 H 1.08000 * 120.02399 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0738 1.5116 -2.0484 6 6 2.0275 3.3493 -1.5289 7 7 1.7142 3.9391 -2.6618 8 14 3.0007 4.2759 -0.2313 9 1 4.4531 4.0625 -0.4557 10 1 2.6934 5.7258 -0.3237 11 1 2.6293 3.7760 1.1168 12 6 1.9956 -0.7659 1.1375 13 6 1.6315 -2.2426 0.9702 14 1 0.5533 -2.3389 0.8432 15 8 2.2957 -2.7695 -0.1801 16 6 2.0701 -3.0199 2.2129 17 7 1.7201 -4.4376 2.0526 18 6 2.1267 -5.2166 3.2299 19 1 2.0066 -4.6090 4.1268 20 6 3.5927 -5.6300 3.0864 21 8 3.7302 -6.5209 1.9776 22 6 1.2657 -6.4485 3.3387 23 6 0.6597 -6.9699 2.2109 24 6 -0.1262 -8.1023 2.3085 25 6 -0.3161 -8.7102 3.5383 26 9 -1.0883 -9.8146 3.6342 27 6 0.2859 -8.1861 4.6690 28 6 1.0777 -7.0549 4.5691 29 9 1.6663 -6.5426 5.6720 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.5611 1.9274 0.8309 34 1 3.0797 1.3445 0.1082 35 1 1.9894 4.8549 -2.8240 36 1 3.0798 -0.6610 1.1755 37 1 1.5612 -0.3873 2.0628 38 1 3.2602 -2.7166 -0.1361 39 1 3.1484 -2.9236 2.3400 40 1 1.5636 -2.6180 3.0905 41 1 0.7341 -4.5481 1.8691 42 1 4.2054 -4.7442 2.9187 43 1 3.9199 -6.1308 3.9976 44 1 4.6357 -6.8249 1.8271 45 1 0.8040 -6.4941 1.2522 46 1 -0.5959 -8.5111 1.4261 47 1 0.1387 -8.6597 5.6284 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596066101.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:11 Heat of formation + Delta-G solvation = -172.215197 kcal Electronic energy + Delta-G solvation = -30041.307911 eV Core-core repulsion = 25473.501179 eV Total energy + Delta-G solvation = -4567.806732 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.10316 -50.03256 -40.53222 -39.45180 -38.06954 -37.11282 -35.85117 -34.58523 -32.67938 -31.83956 -30.88323 -29.49864 -28.70814 -27.18234 -25.21424 -24.44079 -23.75176 -22.46586 -21.87361 -21.39386 -19.30968 -19.01889 -18.57559 -18.02783 -17.85332 -17.09993 -17.00693 -16.96013 -16.68147 -16.40238 -16.35364 -16.01468 -15.87530 -15.72209 -15.47759 -15.29134 -15.02589 -14.72411 -14.56509 -14.32006 -14.12209 -13.95263 -13.71915 -13.44325 -13.16879 -13.05946 -12.85198 -12.62048 -12.50102 -12.40061 -12.38184 -12.24891 -12.02381 -11.90739 -11.58030 -11.46742 -10.81044 -10.77736 -10.63308 -10.07826 -9.67089 -9.37275 -8.94389 -8.27168 -6.30806 -0.11903 0.00741 1.34735 1.36691 1.47015 2.32745 2.34816 2.74645 2.84220 3.05621 3.27186 3.30341 3.45953 3.59086 3.64384 3.78690 3.89895 3.95420 4.08498 4.19605 4.29109 4.32790 4.40213 4.46655 4.56760 4.59050 4.62500 4.65872 4.70030 4.75652 4.79991 4.86877 4.90240 4.92646 5.02954 5.10003 5.15059 5.21283 5.27191 5.53921 5.73215 5.95272 6.01611 6.32807 6.36848 6.68247 6.76126 7.02398 7.10654 7.32612 8.89638 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.021327 B = 0.001962 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.586677 B =14264.452716 C =14633.592502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.541 5.541 3 C 0.172 3.828 4 C -0.516 4.516 5 H 0.035 0.965 6 C 0.003 3.997 7 N -0.949 5.949 8 Si 0.951 3.049 9 H -0.263 1.263 10 H -0.283 1.283 11 H -0.250 1.250 12 C 0.021 3.979 13 C 0.128 3.872 14 H 0.089 0.911 15 O -0.553 6.553 16 C 0.036 3.964 17 N -0.665 5.665 18 C 0.130 3.870 19 H 0.072 0.928 20 C 0.095 3.905 21 O -0.570 6.570 22 C -0.124 4.124 23 C -0.034 4.034 24 C -0.159 4.159 25 C 0.116 3.884 26 F -0.138 7.138 27 C -0.194 4.194 28 C 0.120 3.880 29 F -0.135 7.135 30 H 0.043 0.957 31 H 0.019 0.981 32 H 0.078 0.922 33 H -0.013 1.013 34 H 0.029 0.971 35 H 0.266 0.734 36 H 0.078 0.922 37 H 0.041 0.959 38 H 0.378 0.622 39 H 0.085 0.915 40 H 0.048 0.952 41 H 0.346 0.654 42 H 0.056 0.944 43 H 0.050 0.950 44 H 0.389 0.611 45 H 0.156 0.844 46 H 0.159 0.841 47 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.608 -26.645 19.394 32.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.264 5.264 3 C 0.045 3.955 4 C -0.555 4.555 5 H 0.053 0.947 6 C -0.194 4.194 7 N -0.590 5.590 8 Si 0.774 3.226 9 H -0.188 1.188 10 H -0.209 1.209 11 H -0.174 1.174 12 C -0.108 4.108 13 C 0.067 3.933 14 H 0.106 0.894 15 O -0.358 6.358 16 C -0.094 4.094 17 N -0.297 5.297 18 C 0.020 3.980 19 H 0.090 0.910 20 C 0.016 3.984 21 O -0.376 6.376 22 C -0.125 4.125 23 C -0.053 4.053 24 C -0.178 4.178 25 C 0.097 3.903 26 F -0.117 7.117 27 C -0.214 4.214 28 C 0.100 3.900 29 F -0.114 7.114 30 H 0.062 0.938 31 H 0.037 0.963 32 H 0.096 0.904 33 H 0.004 0.996 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.059 0.941 38 H 0.225 0.775 39 H 0.104 0.896 40 H 0.066 0.934 41 H 0.165 0.835 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.237 0.763 45 H 0.174 0.826 46 H 0.177 0.823 47 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 1.085 -26.894 18.333 32.566 hybrid contribution 0.401 1.423 1.911 2.416 sum 1.485 -25.472 20.244 32.570 Atomic orbital electron populations 1.22206 0.87860 1.00947 0.99720 1.61726 1.07971 1.14388 1.42345 1.19951 0.95122 0.85932 0.94491 1.21285 1.34795 0.97500 1.01882 0.94715 1.25915 0.97157 0.98488 0.97806 1.70061 1.48644 1.13906 1.26405 0.85660 0.79412 0.77509 0.79981 1.18830 1.20876 1.17420 1.22903 1.00875 0.95162 0.91825 1.21740 0.97342 0.88900 0.85290 0.89363 1.86588 1.23922 1.83872 1.41432 1.22647 1.02280 0.87768 0.96720 1.60424 1.23939 1.08142 1.37217 1.20464 0.93676 0.90886 0.92992 0.91009 1.22066 0.94204 0.93164 0.88950 1.86532 1.34438 1.65841 1.50806 1.19937 1.01020 0.99559 0.92020 1.20904 0.92100 0.93462 0.98789 1.21485 1.01721 0.97380 0.97171 1.17452 0.93348 0.85180 0.94360 1.91521 1.72658 1.50486 1.96995 1.21089 1.01653 0.98104 1.00523 1.17178 0.96145 0.94211 0.82494 1.91505 1.82040 1.86180 1.51649 0.93819 0.96277 0.90384 0.99576 0.95251 0.92466 0.90321 0.94118 0.77452 0.89643 0.93382 0.83452 0.92536 0.93218 0.76274 0.82610 0.82308 0.82310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.55 9.17 127.69 1.17 2.72 16 2 N -0.54 -21.79 4.70 -927.04 -4.36 -26.15 16 3 C 0.17 8.16 3.79 85.55 0.32 8.48 16 4 C -0.52 -30.15 9.07 25.60 0.23 -29.92 16 5 H 0.03 2.29 7.35 -2.91 -0.02 2.27 16 6 C 0.00 0.19 5.47 84.66 0.46 0.65 16 7 N -0.95 -59.86 13.96 21.45 0.30 -59.56 16 8 Si 0.95 43.75 27.47 68.60 1.88 45.64 16 9 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.25 -10.66 6.54 99.48 0.65 -10.01 16 12 C 0.02 0.61 4.60 86.30 0.40 1.01 16 13 C 0.13 3.00 3.13 30.60 0.10 3.10 16 14 H 0.09 2.18 6.26 -2.39 -0.01 2.17 16 15 O -0.55 -15.40 13.15 -148.98 -1.96 -17.36 16 16 C 0.04 0.60 5.15 86.30 0.44 1.04 16 17 N -0.66 -10.92 5.38 -495.46 -2.67 -13.58 16 18 C 0.13 1.93 2.40 44.17 0.11 2.04 16 19 H 0.07 1.03 7.45 -2.39 -0.02 1.01 16 20 C 0.09 1.30 6.79 71.98 0.49 1.79 16 21 O -0.57 -8.72 12.88 -148.98 -1.92 -10.64 16 22 C -0.12 -1.94 4.53 -19.81 -0.09 -2.03 16 23 C -0.03 -0.51 8.60 22.26 0.19 -0.32 16 24 C -0.16 -2.21 10.03 22.32 0.22 -1.99 16 25 C 0.12 1.79 7.30 22.37 0.16 1.95 16 26 F -0.14 -2.31 17.27 44.97 0.78 -1.53 16 27 C -0.19 -2.86 10.01 22.36 0.22 -2.64 16 28 C 0.12 1.91 7.24 22.37 0.16 2.07 16 29 F -0.14 -2.25 16.57 44.97 0.74 -1.51 16 30 H 0.04 1.94 6.86 -2.39 -0.02 1.93 16 31 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.08 2.47 6.21 -2.38 -0.01 2.45 16 33 H -0.01 -0.63 7.18 -2.39 -0.02 -0.65 16 34 H 0.03 1.35 7.36 -2.39 -0.02 1.33 16 35 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 36 H 0.08 2.15 7.93 -2.39 -0.02 2.13 16 37 H 0.04 1.09 8.12 -2.39 -0.02 1.07 16 38 H 0.38 8.60 9.05 -74.06 -0.67 7.93 16 39 H 0.09 1.31 7.36 -2.39 -0.02 1.29 16 40 H 0.05 0.73 8.05 -2.38 -0.02 0.71 16 41 H 0.35 5.61 7.25 -89.69 -0.65 4.96 16 42 H 0.06 0.71 7.36 -2.39 -0.02 0.69 16 43 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 44 H 0.39 3.02 9.12 -74.06 -0.68 2.34 16 45 H 0.16 2.40 6.96 -2.91 -0.02 2.38 16 46 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 47 H 0.16 1.83 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -72.55 389.96 -3.62 -76.18 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: -1.02 Total: 20.57 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: 4.60 Total: -12.04 kcal Atomic # 7 Polarization: -92.57 SS G_CDS: -6.73 Total: -99.30 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -3.88 Total: -28.01 kcal Atomic # 9 Polarization: -4.56 SS G_CDS: 1.52 Total: -3.04 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.88 Total: 45.64 kcal Total: -72.55 -3.62 -76.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596066101.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.039 kcal (2) G-P(sol) polarization free energy of solvation -72.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds