Wall clock time and date at job start Wed Apr 1 2020 03:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46489 * 2 1 4 4 C 1.46494 * 120.00250 * 83.50639 * 3 2 1 5 5 C 1.53002 * 109.47469 * 75.23170 * 4 3 2 6 6 H 1.08996 * 109.47213 * 305.62122 * 5 4 3 7 7 C 1.53009 * 109.46894 * 65.61777 * 5 4 3 8 8 C 1.47204 * 109.47303 * 185.61420 * 5 4 3 9 9 N 5.51096 * 109.89059 * 57.77434 * 2 1 3 10 10 S 1.65599 * 119.99947 * 263.49846 * 3 2 1 11 11 O 1.42099 * 106.40409 * 209.77382 * 10 3 2 12 12 O 1.42100 * 106.40209 * 342.69271 * 10 3 2 13 13 N 1.65600 * 107.21659 * 96.23273 * 10 3 2 14 14 C 1.47077 * 120.87929 * 274.53925 * 13 10 3 15 15 C 1.53696 * 108.27362 * 128.75738 * 14 13 10 16 16 N 1.46898 * 109.26053 * 54.08282 * 15 14 13 17 17 C 1.46897 * 111.00236 * 172.60712 * 16 15 14 18 18 C 1.50697 * 109.47265 * 294.29919 * 17 16 15 19 19 H 1.08004 * 119.99726 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00154 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99994 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00295 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46753 * 90.00481 * 22 20 18 24 24 H 1.48499 * 109.47234 * 210.00645 * 22 20 18 25 25 H 1.48498 * 109.46826 * 330.00852 * 22 20 18 26 26 C 1.46899 * 111.26805 * 296.75823 * 16 15 14 27 27 C 1.47077 * 120.87936 * 94.82157 * 13 10 3 28 28 H 1.09003 * 109.47533 * 306.26599 * 1 2 3 29 29 H 1.08997 * 109.47347 * 66.26646 * 1 2 3 30 30 H 1.09003 * 109.46738 * 186.26922 * 1 2 3 31 31 H 1.08994 * 109.47294 * 240.00066 * 2 1 3 32 32 H 1.09001 * 109.46861 * 119.99545 * 2 1 3 33 33 H 1.08998 * 109.47240 * 315.23373 * 4 3 2 34 34 H 1.08997 * 109.47673 * 195.23583 * 4 3 2 35 35 H 1.08995 * 109.46703 * 56.02824 * 7 5 4 36 36 H 1.09002 * 109.47102 * 176.02693 * 7 5 4 37 37 H 1.09001 * 109.46640 * 296.02869 * 7 5 4 38 38 H 1.09004 * 109.63173 * 248.52179 * 14 13 10 39 39 H 1.08997 * 109.63199 * 9.10908 * 14 13 10 40 40 H 1.08996 * 109.64948 * 294.07604 * 15 14 13 41 41 H 1.09000 * 109.42285 * 173.94938 * 15 14 13 42 42 H 1.09001 * 109.47174 * 54.30322 * 17 16 15 43 43 H 1.08999 * 109.46986 * 174.29981 * 17 16 15 44 44 H 0.97002 * 120.00319 * 180.02562 * 21 20 18 45 45 H 1.08998 * 109.49312 * 303.14664 * 26 16 15 46 46 H 1.08998 * 109.51518 * 183.07631 * 26 16 15 47 47 H 1.08998 * 109.63337 * 350.89560 * 27 13 10 48 48 H 1.09003 * 109.63054 * 111.47742 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1270 2.1197 1.2605 5 6 3.3459 1.6218 2.0398 6 1 3.2811 0.5408 2.1637 7 6 4.6211 1.9714 1.2700 8 6 3.3792 2.2662 3.3629 9 7 3.4050 2.7634 4.3839 10 16 2.4472 2.1078 -1.4249 11 8 3.4636 3.0482 -1.1058 12 8 2.6250 1.0624 -2.3708 13 7 1.1415 2.9870 -1.9394 14 6 0.0727 2.3585 -2.7304 15 6 -1.2745 2.6882 -2.0681 16 7 -1.3934 4.1439 -1.9102 17 6 -2.7358 4.5149 -1.4431 18 6 -3.7487 4.1784 -2.5069 19 1 -3.4274 3.7330 -3.4369 20 6 -5.0857 4.4381 -2.2925 21 7 -5.4770 4.9799 -1.1599 22 14 -6.3413 4.0217 -3.6115 23 1 -6.8330 2.6356 -3.4067 24 1 -7.4816 4.9692 -3.5262 25 1 -5.7073 4.1293 -4.9500 26 6 -0.3587 4.6683 -1.0090 27 6 1.0231 4.4183 -1.6227 28 1 -0.3634 0.6079 0.8286 29 1 -0.3634 0.4136 -0.9407 30 1 -0.3633 -1.0216 0.1122 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.2266 1.9605 1.8538 34 1 2.2400 3.1832 1.0501 35 1 4.6507 3.0450 1.0846 36 1 5.4917 1.6800 1.8577 37 1 4.6293 1.4381 0.3194 38 1 0.0902 2.7513 -3.7471 39 1 0.2180 1.2784 -2.7496 40 1 -1.3286 2.2106 -1.0899 41 1 -2.0865 2.3231 -2.6969 42 1 -2.9687 3.9635 -0.5321 43 1 -2.7662 5.5849 -1.2379 44 1 -6.4177 5.1623 -1.0089 45 1 -0.4254 4.1632 -0.0455 46 1 -0.5063 5.7392 -0.8693 47 1 1.7972 4.7008 -0.9091 48 1 1.1302 5.0053 -2.5349 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601535674.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:06 Heat of formation + Delta-G solvation = -38.783512 kcal Electronic energy + Delta-G solvation = -30240.078410 eV Core-core repulsion = 26264.190849 eV Total energy + Delta-G solvation = -3975.887562 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -38.57641 -38.39737 -37.46336 -36.51824 -35.93180 -34.45964 -33.60963 -32.36160 -30.91389 -30.17162 -27.87231 -26.82734 -25.13579 -24.01260 -23.37425 -22.49055 -21.76704 -20.07050 -18.84996 -18.30919 -17.96632 -17.18843 -16.57575 -16.40407 -15.42092 -15.26115 -14.92877 -14.55589 -14.52687 -14.33219 -14.22099 -14.15062 -13.80453 -13.51755 -13.39046 -13.25672 -13.09255 -12.84083 -12.51672 -12.39371 -12.31752 -12.19271 -12.03084 -11.93305 -11.81015 -11.78391 -11.69207 -11.30976 -11.28646 -11.13215 -11.01887 -10.85148 -10.79853 -10.65069 -10.46693 -9.93676 -9.45924 -9.33905 -8.90018 -8.50685 -7.34684 -6.09943 -4.11873 0.44115 2.42268 2.49671 2.68021 3.26721 3.29822 3.33974 3.37717 3.64439 4.16943 4.27049 4.35648 4.48213 4.62929 4.70967 4.76049 4.87067 4.98160 5.04507 5.22088 5.25477 5.30667 5.33160 5.36354 5.41532 5.47152 5.56832 5.58695 5.60993 5.66355 5.74550 5.89688 5.94223 5.97381 6.07006 6.14033 6.24317 6.27865 6.43714 6.47018 6.71734 7.18776 7.23275 7.26019 7.71116 7.98709 8.09050 8.44436 8.95662 9.53043 11.00722 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.015221 B = 0.003249 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.105899 B = 8616.766608 C = 9140.414306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.109 3.891 3 N -1.004 6.004 4 C 0.134 3.866 5 C -0.012 4.012 6 H 0.118 0.882 7 C -0.144 4.144 8 C 0.213 3.787 9 N -0.430 5.430 10 S 2.779 3.221 11 O -0.972 6.972 12 O -0.975 6.975 13 N -1.002 6.002 14 C 0.126 3.874 15 C 0.051 3.949 16 N -0.533 5.533 17 C 0.195 3.805 18 C -0.509 4.509 19 H 0.064 0.936 20 C 0.056 3.944 21 N -0.898 5.898 22 Si 0.897 3.103 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.272 1.272 26 C 0.042 3.958 27 C 0.127 3.873 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.028 0.972 41 H 0.094 0.906 42 H -0.010 1.010 43 H 0.031 0.969 44 H 0.262 0.738 45 H 0.025 0.975 46 H 0.079 0.921 47 H 0.084 0.916 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.897 -9.920 3.152 19.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.016 4.016 3 N -0.841 5.841 4 C 0.006 3.994 5 C -0.036 4.036 6 H 0.136 0.864 7 C -0.203 4.203 8 C -0.106 4.106 9 N -0.106 5.106 10 S 2.789 3.211 11 O -0.956 6.956 12 O -0.959 6.959 13 N -0.844 5.844 14 C 0.001 3.999 15 C -0.079 4.079 16 N -0.258 5.258 17 C 0.070 3.930 18 C -0.548 4.548 19 H 0.082 0.918 20 C -0.145 4.145 21 N -0.537 5.537 22 Si 0.725 3.275 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.197 1.197 26 C -0.088 4.088 27 C 0.002 3.998 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.113 0.887 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.111 0.889 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.046 0.954 41 H 0.112 0.888 42 H 0.008 0.992 43 H 0.049 0.951 44 H 0.071 0.929 45 H 0.043 0.957 46 H 0.098 0.902 47 H 0.102 0.898 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 17.687 -8.976 3.881 20.211 hybrid contribution -1.488 -0.686 0.084 1.641 sum 16.199 -9.662 3.965 19.274 Atomic orbital electron populations 1.22341 0.95476 1.02714 1.03376 1.21418 0.94853 0.81137 1.04168 1.58080 1.81400 1.22871 1.21751 1.21163 0.96714 0.96267 0.85275 1.19288 0.98927 1.00780 0.84580 0.86394 1.21871 0.94489 1.04349 0.99543 1.28948 0.93475 0.93719 0.94420 1.81251 1.08059 1.09061 1.12191 1.02133 0.73384 0.72858 0.72726 1.93609 1.54534 1.63038 1.84427 1.93593 1.85389 1.57132 1.59806 1.58054 1.40103 1.19419 1.66790 1.21745 0.86374 0.96340 0.95474 1.22446 0.96027 0.90076 0.99346 1.61976 1.05379 1.10401 1.48037 1.19714 0.82422 0.96251 0.94623 1.21138 0.90811 1.40790 1.02058 0.91793 1.24986 0.98590 0.95289 0.95670 1.69952 1.16246 1.43436 1.24080 0.86509 0.80856 0.78048 0.82075 1.20750 1.21289 1.19721 1.22379 0.91836 1.00648 0.93939 1.21589 0.97577 0.79558 1.01118 0.91902 0.91750 0.91271 0.88708 0.90087 0.89473 0.88867 0.90092 0.91761 0.91397 0.90369 0.90205 0.95356 0.88784 0.99194 0.95121 0.92880 0.95674 0.90242 0.89792 0.90363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.48 10.15 37.16 0.38 -1.11 16 2 C 0.11 0.79 6.32 -4.04 -0.03 0.76 16 3 N -1.00 -8.63 2.45 -114.39 -0.28 -8.91 16 4 C 0.13 1.01 4.92 -4.04 -0.02 0.99 16 5 C -0.01 -0.08 2.87 -93.40 -0.27 -0.35 16 6 H 0.12 0.50 7.27 -51.93 -0.38 0.12 16 7 C -0.14 -1.07 7.75 37.16 0.29 -0.78 16 8 C 0.21 1.99 14.64 -20.76 -0.30 1.69 16 9 N -0.43 -5.34 18.54 42.15 0.78 -4.56 16 10 S 2.78 32.49 5.63 -107.50 -0.60 31.89 16 11 O -0.97 -12.41 13.33 -57.17 -0.76 -13.18 16 12 O -0.98 -13.60 15.51 -57.17 -0.89 -14.49 16 13 N -1.00 -12.74 3.38 -112.97 -0.38 -13.12 16 14 C 0.13 1.71 6.10 -3.37 -0.02 1.69 16 15 C 0.05 0.85 5.19 -3.46 -0.02 0.83 16 16 N -0.53 -10.22 4.62 -235.47 -1.09 -11.31 16 17 C 0.19 4.70 4.72 -4.98 -0.02 4.67 16 18 C -0.51 -13.42 8.41 -34.44 -0.29 -13.71 16 19 H 0.06 1.66 7.13 -52.48 -0.37 1.28 16 20 C 0.06 1.52 5.46 -17.82 -0.10 1.43 16 21 N -0.90 -25.67 13.29 55.43 0.74 -24.93 16 22 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 C 0.04 0.66 5.62 -3.70 -0.02 0.64 16 27 C 0.13 1.64 6.55 -3.60 -0.02 1.61 16 28 H 0.06 0.55 7.86 -51.93 -0.41 0.14 16 29 H 0.06 0.63 5.17 -51.93 -0.27 0.36 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.09 0.73 6.84 -51.93 -0.36 0.38 16 32 H 0.08 0.37 7.24 -51.93 -0.38 0.00 16 33 H 0.09 0.59 7.86 -51.93 -0.41 0.19 16 34 H 0.09 0.74 7.46 -51.93 -0.39 0.36 16 35 H 0.08 0.71 7.61 -51.93 -0.40 0.31 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.53 6.89 -51.93 -0.36 0.17 16 38 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.08 0.95 6.40 -51.93 -0.33 0.62 16 40 H 0.03 0.46 6.94 -51.93 -0.36 0.10 16 41 H 0.09 1.72 6.67 -51.93 -0.35 1.37 16 42 H -0.01 -0.25 8.12 -51.93 -0.42 -0.68 16 43 H 0.03 0.80 7.97 -51.93 -0.41 0.39 16 44 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 45 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.08 1.23 7.99 -51.93 -0.41 0.82 16 47 H 0.08 0.92 7.09 -51.93 -0.37 0.55 16 48 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 387.85 15.07 5.84 5.84 Total: -1.00 -32.50 387.85 -9.72 -42.22 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -7.61 Total: -3.58 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -0.45 Total: -1.63 kcal Atomic # 7 Polarization: -62.59 SS G_CDS: -0.23 Total: -62.83 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -1.65 Total: -27.66 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 32.49 SS G_CDS: -0.60 Total: 31.89 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.50 -9.72 -42.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601535674.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.436 kcal (2) G-P(sol) polarization free energy of solvation -32.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds