Wall clock time and date at job start Wed Apr 1 2020 03:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46489 * 2 1 4 4 C 1.46494 * 120.00250 * 83.50639 * 3 2 1 5 5 C 1.53002 * 109.47469 * 75.23170 * 4 3 2 6 6 H 1.08996 * 109.47213 * 305.62122 * 5 4 3 7 7 C 1.53009 * 109.46894 * 65.61777 * 5 4 3 8 8 C 1.47204 * 109.47303 * 185.61420 * 5 4 3 9 9 N 5.51096 * 109.89059 * 57.77434 * 2 1 3 10 10 S 1.65599 * 119.99947 * 263.49846 * 3 2 1 11 11 O 1.42099 * 106.40409 * 209.77382 * 10 3 2 12 12 O 1.42100 * 106.40209 * 342.69271 * 10 3 2 13 13 N 1.65600 * 107.21659 * 96.23273 * 10 3 2 14 14 C 1.47077 * 120.87929 * 274.53925 * 13 10 3 15 15 C 1.53696 * 108.27362 * 128.75738 * 14 13 10 16 16 N 1.46898 * 109.26053 * 54.08282 * 15 14 13 17 17 C 1.46897 * 111.00236 * 172.60712 * 16 15 14 18 18 C 1.50697 * 109.47265 * 294.29919 * 17 16 15 19 19 H 1.08004 * 119.99726 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00154 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99994 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00295 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46753 * 90.00481 * 22 20 18 24 24 H 1.48499 * 109.47234 * 210.00645 * 22 20 18 25 25 H 1.48498 * 109.46826 * 330.00852 * 22 20 18 26 26 C 1.46899 * 111.26805 * 296.75823 * 16 15 14 27 27 C 1.47077 * 120.87936 * 94.82157 * 13 10 3 28 28 H 1.09003 * 109.47533 * 306.26599 * 1 2 3 29 29 H 1.08997 * 109.47347 * 66.26646 * 1 2 3 30 30 H 1.09003 * 109.46738 * 186.26922 * 1 2 3 31 31 H 1.08994 * 109.47294 * 240.00066 * 2 1 3 32 32 H 1.09001 * 109.46861 * 119.99545 * 2 1 3 33 33 H 1.08998 * 109.47240 * 315.23373 * 4 3 2 34 34 H 1.08997 * 109.47673 * 195.23583 * 4 3 2 35 35 H 1.08995 * 109.46703 * 56.02824 * 7 5 4 36 36 H 1.09002 * 109.47102 * 176.02693 * 7 5 4 37 37 H 1.09001 * 109.46640 * 296.02869 * 7 5 4 38 38 H 1.09004 * 109.63173 * 248.52179 * 14 13 10 39 39 H 1.08997 * 109.63199 * 9.10908 * 14 13 10 40 40 H 1.08996 * 109.64948 * 294.07604 * 15 14 13 41 41 H 1.09000 * 109.42285 * 173.94938 * 15 14 13 42 42 H 1.09001 * 109.47174 * 54.30322 * 17 16 15 43 43 H 1.08999 * 109.46986 * 174.29981 * 17 16 15 44 44 H 0.97002 * 120.00319 * 180.02562 * 21 20 18 45 45 H 1.08998 * 109.49312 * 303.14664 * 26 16 15 46 46 H 1.08998 * 109.51518 * 183.07631 * 26 16 15 47 47 H 1.08998 * 109.63337 * 350.89560 * 27 13 10 48 48 H 1.09003 * 109.63054 * 111.47742 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1270 2.1197 1.2605 5 6 3.3459 1.6218 2.0398 6 1 3.2811 0.5408 2.1637 7 6 4.6211 1.9714 1.2700 8 6 3.3792 2.2662 3.3629 9 7 3.4050 2.7634 4.3839 10 16 2.4472 2.1078 -1.4249 11 8 3.4636 3.0482 -1.1058 12 8 2.6250 1.0624 -2.3708 13 7 1.1415 2.9870 -1.9394 14 6 0.0727 2.3585 -2.7304 15 6 -1.2745 2.6882 -2.0681 16 7 -1.3934 4.1439 -1.9102 17 6 -2.7358 4.5149 -1.4431 18 6 -3.7487 4.1784 -2.5069 19 1 -3.4274 3.7330 -3.4369 20 6 -5.0857 4.4381 -2.2925 21 7 -5.4770 4.9799 -1.1599 22 14 -6.3413 4.0217 -3.6115 23 1 -6.8330 2.6356 -3.4067 24 1 -7.4816 4.9692 -3.5262 25 1 -5.7073 4.1293 -4.9500 26 6 -0.3587 4.6683 -1.0090 27 6 1.0231 4.4183 -1.6227 28 1 -0.3634 0.6079 0.8286 29 1 -0.3634 0.4136 -0.9407 30 1 -0.3633 -1.0216 0.1122 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.2266 1.9605 1.8538 34 1 2.2400 3.1832 1.0501 35 1 4.6507 3.0450 1.0846 36 1 5.4917 1.6800 1.8577 37 1 4.6293 1.4381 0.3194 38 1 0.0902 2.7513 -3.7471 39 1 0.2180 1.2784 -2.7496 40 1 -1.3286 2.2106 -1.0899 41 1 -2.0865 2.3231 -2.6969 42 1 -2.9687 3.9635 -0.5321 43 1 -2.7662 5.5849 -1.2379 44 1 -6.4177 5.1623 -1.0089 45 1 -0.4254 4.1632 -0.0455 46 1 -0.5063 5.7392 -0.8693 47 1 1.7972 4.7008 -0.9091 48 1 1.1302 5.0053 -2.5349 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601535674.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:05 Heat of formation + Delta-G solvation = -61.745889 kcal Electronic energy + Delta-G solvation = -30241.074134 eV Core-core repulsion = 26264.190849 eV Total energy + Delta-G solvation = -3976.883285 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.75117 -39.21661 -38.43130 -37.30036 -36.92186 -35.98099 -34.28854 -34.22121 -32.09309 -30.86109 -29.60202 -27.44931 -26.74170 -24.72337 -24.54397 -23.62873 -23.09659 -21.28033 -19.75959 -19.11359 -18.83617 -18.44954 -18.05233 -17.39667 -16.70873 -16.20074 -16.04881 -15.88709 -15.65948 -15.43876 -15.28912 -15.19808 -14.96498 -14.69597 -14.12764 -14.06524 -13.97983 -13.90368 -13.67159 -13.55445 -13.40347 -13.24649 -13.14096 -12.99769 -12.86379 -12.66478 -12.57919 -12.54056 -12.48489 -12.31085 -12.23482 -12.20743 -11.99455 -11.90157 -11.63318 -11.52584 -11.23856 -10.59103 -10.18295 -10.02969 -8.92646 -8.17738 -6.27001 -0.47795 1.43545 1.45022 1.56031 1.65630 1.76980 1.82946 2.40868 2.43254 2.94040 3.15325 3.27101 3.31381 3.59714 3.73087 3.88635 4.07874 4.15476 4.23837 4.28674 4.35576 4.38961 4.42686 4.45759 4.52526 4.65374 4.72405 4.75573 4.77870 4.89563 4.91308 5.01135 5.03146 5.06498 5.10863 5.14814 5.26207 5.29744 5.32052 5.40622 5.46049 5.52062 5.68449 5.72933 6.08948 6.37972 6.54849 6.67925 6.89994 7.43044 8.92953 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.015221 B = 0.003249 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.105899 B = 8616.766608 C = 9140.414306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.107 3.893 3 N -0.995 5.995 4 C 0.127 3.873 5 C -0.004 4.004 6 H 0.154 0.846 7 C -0.147 4.147 8 C 0.242 3.758 9 N -0.487 5.487 10 S 2.792 3.208 11 O -0.982 6.982 12 O -0.995 6.995 13 N -1.006 6.006 14 C 0.135 3.865 15 C 0.055 3.945 16 N -0.542 5.542 17 C 0.211 3.789 18 C -0.519 4.519 19 H 0.065 0.935 20 C 0.003 3.997 21 N -0.935 5.935 22 Si 0.965 3.035 23 H -0.272 1.272 24 H -0.287 1.287 25 H -0.265 1.265 26 C 0.041 3.959 27 C 0.134 3.866 28 H 0.056 0.944 29 H 0.044 0.956 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.117 0.883 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.032 0.968 41 H 0.073 0.927 42 H -0.037 1.037 43 H 0.003 0.997 44 H 0.263 0.737 45 H 0.030 0.970 46 H 0.075 0.925 47 H 0.108 0.892 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.999 -11.717 2.722 21.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.017 4.017 3 N -0.834 5.834 4 C 0.000 4.000 5 C -0.027 4.027 6 H 0.171 0.829 7 C -0.205 4.205 8 C -0.076 4.076 9 N -0.164 5.164 10 S 2.802 3.198 11 O -0.966 6.966 12 O -0.979 6.979 13 N -0.846 5.846 14 C 0.010 3.990 15 C -0.075 4.075 16 N -0.267 5.267 17 C 0.085 3.915 18 C -0.558 4.558 19 H 0.083 0.917 20 C -0.195 4.195 21 N -0.576 5.576 22 Si 0.790 3.210 23 H -0.198 1.198 24 H -0.213 1.213 25 H -0.189 1.189 26 C -0.088 4.088 27 C 0.008 3.992 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.111 0.889 32 H 0.135 0.865 33 H 0.117 0.883 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.119 0.881 40 H 0.050 0.950 41 H 0.092 0.908 42 H -0.019 1.019 43 H 0.021 0.979 44 H 0.072 0.928 45 H 0.048 0.952 46 H 0.094 0.906 47 H 0.126 0.874 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 18.817 -10.778 3.433 21.956 hybrid contribution -1.779 -0.153 0.252 1.804 sum 17.038 -10.931 3.685 20.576 Atomic orbital electron populations 1.22352 0.96361 1.03326 1.02009 1.21619 0.94044 0.80229 1.05852 1.57835 1.81164 1.23437 1.20983 1.21295 0.97723 0.96065 0.84917 1.19415 0.98064 1.02459 0.82724 0.82876 1.21883 0.95400 1.03383 0.99851 1.29329 0.91739 0.92280 0.94286 1.81286 1.09919 1.10978 1.14167 1.01665 0.72907 0.72322 0.72883 1.93600 1.54876 1.63508 1.84624 1.93568 1.85629 1.57609 1.61114 1.58108 1.39954 1.19447 1.67111 1.21598 0.84859 0.97619 0.94947 1.22412 0.97326 0.88304 0.99458 1.61868 1.03723 1.12311 1.48805 1.19329 0.85085 0.94017 0.93102 1.21473 0.91589 1.40256 1.02436 0.91656 1.25856 1.00743 0.95161 0.97755 1.70080 1.16669 1.44734 1.26067 0.85447 0.78100 0.77994 0.79469 1.19794 1.21258 1.18900 1.22457 0.92232 1.00327 0.93826 1.21537 0.96210 0.79899 1.01527 0.92527 0.93688 0.89875 0.88886 0.86519 0.88291 0.89355 0.91656 0.90410 0.91413 0.90699 0.88147 0.94960 0.90836 1.01939 0.97933 0.92849 0.95183 0.90644 0.87405 0.90392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.59 10.15 71.98 0.73 -1.86 16 2 C 0.11 1.19 6.32 86.38 0.55 1.73 16 3 N -0.99 -14.41 2.45 -515.80 -1.27 -15.68 16 4 C 0.13 1.59 4.92 86.38 0.42 2.02 16 5 C 0.00 -0.04 2.87 -12.59 -0.04 -0.07 16 6 H 0.15 0.57 7.27 -2.39 -0.02 0.55 16 7 C -0.15 -1.80 7.75 71.99 0.56 -1.24 16 8 C 0.24 4.05 14.64 89.44 1.31 5.35 16 9 N -0.49 -11.66 18.54 20.01 0.37 -11.29 16 10 S 2.79 59.41 5.63 -56.49 -0.32 59.09 16 11 O -0.98 -23.06 13.33 -128.00 -1.71 -24.76 16 12 O -1.00 -25.63 15.51 -128.00 -1.99 -27.62 16 13 N -1.01 -24.08 3.38 -511.33 -1.73 -25.80 16 14 C 0.14 3.54 6.10 86.50 0.53 4.07 16 15 C 0.05 1.81 5.19 86.54 0.45 2.26 16 16 N -0.54 -21.11 4.62 -898.90 -4.15 -25.26 16 17 C 0.21 10.55 4.72 85.56 0.40 10.95 16 18 C -0.52 -27.88 8.41 25.60 0.22 -27.66 16 19 H 0.07 3.42 7.13 -2.91 -0.02 3.40 16 20 C 0.00 0.15 5.46 84.65 0.46 0.62 16 21 N -0.93 -54.64 13.29 21.45 0.28 -54.35 16 22 Si 0.96 42.77 29.54 68.60 2.03 44.80 16 23 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 24 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 25 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 26 C 0.04 1.28 5.62 86.39 0.49 1.77 16 27 C 0.13 3.28 6.55 86.35 0.57 3.84 16 28 H 0.06 0.88 7.86 -2.39 -0.02 0.86 16 29 H 0.04 0.81 5.17 -2.39 -0.01 0.80 16 30 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.09 1.15 6.84 -2.39 -0.02 1.13 16 32 H 0.12 0.52 7.24 -2.39 -0.02 0.50 16 33 H 0.10 1.07 7.86 -2.39 -0.02 1.05 16 34 H 0.09 1.22 7.46 -2.39 -0.02 1.21 16 35 H 0.06 1.03 7.61 -2.39 -0.02 1.01 16 36 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.07 0.86 6.89 -2.39 -0.02 0.85 16 38 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 39 H 0.10 2.23 6.40 -2.39 -0.02 2.21 16 40 H 0.03 1.04 6.94 -2.39 -0.02 1.03 16 41 H 0.07 2.73 6.67 -2.39 -0.02 2.71 16 42 H -0.04 -2.02 8.12 -2.39 -0.02 -2.04 16 43 H 0.00 0.14 7.97 -2.39 -0.02 0.12 16 44 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 45 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.08 2.37 7.99 -2.39 -0.02 2.35 16 47 H 0.11 2.15 7.09 -2.39 -0.02 2.14 16 48 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -71.56 387.85 -0.87 -72.43 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: 0.96 Total: 6.66 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: 6.64 Total: 1.78 kcal Atomic # 7 Polarization: -125.90 SS G_CDS: -6.49 Total: -132.39 kcal Atomic # 8 Polarization: -48.69 SS G_CDS: -3.69 Total: -52.38 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Atomic # 16 Polarization: 59.41 SS G_CDS: -0.32 Total: 59.09 kcal Total: -71.56 -0.87 -72.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601535674.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.688 kcal (2) G-P(sol) polarization free energy of solvation -71.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds