Wall clock time and date at job start Wed Apr 1 2020 04:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99991 * 2 1 4 4 H 1.48498 * 109.47181 * 270.00347 * 3 2 1 5 5 H 1.48507 * 109.46632 * 30.00229 * 3 2 1 6 6 H 1.48500 * 109.47235 * 149.99972 * 3 2 1 7 7 C 1.37876 * 120.00190 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99723 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00054 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47101 * 180.02562 * 9 7 2 11 11 C 1.46949 * 110.99885 * 169.99798 * 10 9 7 12 12 C 1.53046 * 109.36770 * 183.18752 * 11 10 9 13 13 N 1.46961 * 109.36497 * 301.60168 * 12 11 10 14 14 C 1.46894 * 111.00212 * 183.18084 * 13 12 11 15 15 C 1.50701 * 109.47314 * 164.67146 * 14 13 12 16 16 C 1.35087 * 126.07517 * 105.73558 * 15 14 13 17 17 N 1.35031 * 107.97684 * 179.97438 * 16 15 14 18 18 H 0.97006 * 125.93177 * 179.97438 * 17 16 15 19 19 N 1.40076 * 108.14384 * 0.02562 * 17 16 15 20 20 C 1.31621 * 108.10383 * 359.97438 * 19 17 16 21 21 C 1.48419 * 126.03341 * 180.02562 * 20 19 17 22 22 C 1.39332 * 120.08984 * 136.66414 * 21 20 19 23 23 C 1.37987 * 119.89994 * 179.72079 * 22 21 20 24 24 C 1.38539 * 120.09712 * 0.57503 * 23 22 21 25 25 F 1.35102 * 119.90887 * 179.70077 * 24 23 22 26 26 C 1.38545 * 120.18716 * 359.67566 * 24 23 22 27 27 C 1.37979 * 120.09567 * 0.04567 * 26 24 23 28 28 C 1.46956 * 110.87856 * 59.31770 * 13 12 11 29 29 C 1.46951 * 110.99880 * 293.79686 * 10 9 7 30 30 H 0.96994 * 120.00320 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.47370 * 60.00160 * 9 7 2 32 32 H 1.08998 * 109.47180 * 300.00077 * 9 7 2 33 33 H 1.09001 * 109.48939 * 63.21914 * 11 10 9 34 34 H 1.09006 * 109.49256 * 303.15672 * 11 10 9 35 35 H 1.08997 * 109.49297 * 181.63019 * 12 11 10 36 36 H 1.09006 * 109.48904 * 61.56263 * 12 11 10 37 37 H 1.09007 * 109.46901 * 44.67802 * 14 13 12 38 38 H 1.08996 * 109.48013 * 284.67499 * 14 13 12 39 39 H 1.08001 * 126.00785 * 0.25200 * 16 15 14 40 40 H 1.07996 * 120.05184 * 359.97438 * 22 21 20 41 41 H 1.08002 * 119.95268 * 180.25070 * 23 22 21 42 42 H 1.08005 * 119.94813 * 180.02562 * 26 24 23 43 43 H 1.08002 * 120.04999 * 179.97438 * 27 26 24 44 44 H 1.08996 * 109.49483 * 60.64697 * 28 13 12 45 45 H 1.08997 * 109.48844 * 180.71344 * 28 13 12 46 46 H 1.08994 * 109.49299 * 296.78019 * 29 10 9 47 47 H 1.09004 * 109.48745 * 56.84697 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2058 -3.6157 -0.0005 11 6 1.5211 -4.8939 0.2377 12 6 2.5566 -6.0187 0.3094 13 7 3.3196 -6.0592 -0.9459 14 6 4.2743 -7.1756 -0.9459 15 6 4.7599 -7.4215 -2.3512 16 6 5.9765 -7.0973 -2.8406 17 7 6.0213 -7.4816 -4.1343 18 1 6.7754 -7.3726 -4.7347 19 7 4.7895 -8.0640 -4.4592 20 6 4.0258 -8.0303 -3.3877 21 6 2.6366 -8.5434 -3.2891 22 6 2.2404 -9.2768 -2.1726 23 6 0.9463 -9.7470 -2.0824 24 6 0.0449 -9.5012 -3.1053 25 9 -1.2195 -9.9686 -3.0157 26 6 0.4362 -8.7769 -4.2196 27 6 1.7267 -8.2980 -4.3154 28 6 4.0043 -4.7809 -1.1842 29 6 2.9687 -3.6562 -1.2558 30 1 -0.4850 0.8400 0.0004 31 1 0.6241 -2.5568 -0.8902 32 1 0.6248 -2.5571 0.8897 33 1 0.8255 -5.0915 -0.5779 34 1 0.9735 -4.8433 1.1789 35 1 2.0487 -6.9717 0.4572 36 1 3.2358 -5.8352 1.1420 37 1 3.7838 -8.0731 -0.5688 38 1 5.1220 -6.9291 -0.3066 39 1 6.7747 -6.6193 -2.2921 40 1 2.9439 -9.4733 -1.3772 41 1 0.6371 -10.3121 -1.2155 42 1 -0.2698 -8.5871 -5.0146 43 1 2.0311 -7.7338 -5.1845 44 1 4.6999 -4.5833 -0.3686 45 1 4.5519 -4.8315 -2.1252 46 1 2.2897 -3.8397 -2.0884 47 1 3.4766 -2.7031 -1.4036 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602750073.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:54 Heat of formation + Delta-G solvation = 71.102595 kcal Electronic energy + Delta-G solvation = -30006.322611 eV Core-core repulsion = 25912.128906 eV Total energy + Delta-G solvation = -4094.193705 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.171 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.97096 -41.46101 -38.84686 -38.57927 -35.22900 -32.89764 -32.46889 -31.41568 -30.88537 -30.27155 -29.46553 -27.98252 -25.76332 -23.73641 -23.62744 -22.98629 -22.89864 -21.32056 -20.89391 -19.88428 -19.09268 -17.88308 -17.75756 -16.34997 -16.27495 -15.91659 -15.80803 -15.65308 -14.87640 -14.74150 -14.41535 -14.37737 -14.21844 -14.12369 -13.73303 -13.68582 -13.53307 -13.20309 -13.10307 -12.55130 -12.48984 -12.31283 -11.99061 -11.78872 -11.63194 -11.20631 -11.12833 -10.82657 -10.79057 -10.67189 -10.59633 -10.34147 -10.25535 -9.93303 -9.68057 -9.22677 -9.15020 -8.82230 -8.42337 -8.39629 -8.01247 -7.17249 -6.00243 -4.01557 0.80847 1.14324 1.74539 2.52690 2.65035 3.32261 3.38457 3.42383 3.55319 4.13595 4.21619 4.31160 4.43999 4.59010 4.70900 4.75006 5.00499 5.01388 5.08111 5.13088 5.26051 5.35271 5.39493 5.50773 5.57033 5.62993 5.73725 5.78127 5.85227 5.90906 5.94572 5.96917 6.00646 6.01932 6.13534 6.26644 6.31586 6.41459 6.50747 6.65958 6.73942 6.74438 7.05292 7.25836 7.32377 7.40452 7.44479 7.46364 7.82931 8.13318 8.25646 8.59476 9.06026 9.62476 11.10690 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.010710 B = 0.003037 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.639405 B = 9216.901927 C =10664.067793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.896 3.104 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.506 4.506 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.537 5.537 11 C 0.057 3.943 12 C 0.063 3.937 13 N -0.530 5.530 14 C 0.128 3.872 15 C -0.205 4.205 16 C 0.062 3.938 17 N -0.475 5.475 18 H 0.440 0.560 19 N -0.286 5.286 20 C 0.135 3.865 21 C -0.006 4.006 22 C -0.063 4.063 23 C -0.152 4.152 24 C 0.101 3.899 25 F -0.141 7.141 26 C -0.153 4.153 27 C -0.062 4.062 28 C 0.063 3.937 29 C 0.069 3.931 30 H 0.261 0.739 31 H -0.009 1.009 32 H 0.029 0.971 33 H 0.030 0.970 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.037 0.963 37 H 0.078 0.922 38 H 0.040 0.960 39 H 0.176 0.824 40 H 0.134 0.866 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.133 0.867 44 H 0.036 0.964 45 H 0.066 0.934 46 H 0.027 0.973 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.743 -21.285 -6.122 24.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.724 3.276 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.545 4.545 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.263 5.263 11 C -0.072 4.072 12 C -0.065 4.065 13 N -0.255 5.255 14 C -0.001 4.001 15 C -0.217 4.217 16 C -0.085 4.085 17 N -0.183 5.183 18 H 0.284 0.716 19 N -0.109 5.109 20 C -0.030 4.030 21 C -0.008 4.008 22 C -0.082 4.082 23 C -0.171 4.171 24 C 0.082 3.918 25 F -0.120 7.120 26 C -0.172 4.172 27 C -0.081 4.081 28 C -0.065 4.065 29 C -0.060 4.060 30 H 0.070 0.930 31 H 0.009 0.991 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.056 0.944 37 H 0.096 0.904 38 H 0.058 0.942 39 H 0.193 0.807 40 H 0.152 0.848 41 H 0.155 0.845 42 H 0.154 0.846 43 H 0.151 0.849 44 H 0.054 0.946 45 H 0.084 0.916 46 H 0.045 0.955 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 9.646 -21.498 -7.317 24.673 hybrid contribution 0.546 1.398 0.500 1.581 sum 10.192 -20.100 -6.817 23.545 Atomic orbital electron populations 1.69957 1.06052 1.26713 1.51077 1.24984 0.94836 0.99245 0.95526 0.86529 0.79814 0.83258 0.77990 1.20786 1.21265 1.19818 1.21154 0.93399 0.90001 1.49923 0.91994 1.19690 0.90069 0.87333 0.96061 1.62284 1.28080 1.02741 1.33163 1.22042 0.94797 0.89995 1.00344 1.22137 0.96010 0.98487 0.89840 1.62119 1.25645 1.03003 1.34730 1.20350 0.94348 0.94850 0.90548 1.19967 0.93790 1.09884 0.98047 1.22346 0.99512 1.00525 0.86150 1.46136 1.13748 1.48515 1.09935 0.71585 1.77564 0.91716 1.19758 1.21871 1.20417 0.93381 0.98186 0.91046 1.17675 0.89575 0.98502 0.95082 1.20919 0.95132 0.95432 0.96736 1.20998 0.93449 1.03564 0.99073 1.17783 0.79586 0.98224 0.96226 1.91499 1.37401 1.86670 1.96421 1.21049 0.97501 1.00406 0.98194 1.21013 0.91738 0.97328 0.98031 1.22183 0.95973 0.88616 0.99735 1.21956 0.95470 0.97300 0.91251 0.92954 0.99136 0.95283 0.95203 0.91182 0.91293 0.94443 0.90382 0.94229 0.80672 0.84838 0.84521 0.84589 0.84909 0.94611 0.91578 0.95523 0.89903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.93 13.29 55.43 0.74 -26.20 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.51 -14.27 8.47 -34.44 -0.29 -14.56 16 8 H 0.06 1.72 7.13 -52.48 -0.37 1.35 16 9 C 0.19 5.12 4.72 -4.97 -0.02 5.09 16 10 N -0.54 -11.69 4.70 -235.92 -1.11 -12.80 16 11 C 0.06 1.05 5.61 -3.77 -0.02 1.03 16 12 C 0.06 0.92 5.59 -3.77 -0.02 0.90 16 13 N -0.53 -7.44 4.66 -235.91 -1.10 -8.54 16 14 C 0.13 1.39 4.96 -4.98 -0.02 1.37 16 15 C -0.21 -2.24 4.79 -104.76 -0.50 -2.74 16 16 C 0.06 0.54 11.52 -17.26 -0.20 0.34 16 17 N -0.48 -4.20 7.35 30.42 0.22 -3.98 16 18 H 0.44 2.40 8.96 -182.61 -1.64 0.76 16 19 N -0.29 -3.44 12.74 33.43 0.43 -3.02 16 20 C 0.14 1.64 6.66 -82.78 -0.55 1.09 16 21 C -0.01 -0.07 5.74 -104.89 -0.60 -0.67 16 22 C -0.06 -0.64 8.89 -39.27 -0.35 -0.99 16 23 C -0.15 -1.54 10.01 -39.56 -0.40 -1.93 16 24 C 0.10 1.15 7.30 -39.36 -0.29 0.87 16 25 F -0.14 -1.70 17.26 2.25 0.04 -1.66 16 26 C -0.15 -1.68 10.01 -39.56 -0.40 -2.07 16 27 C -0.06 -0.72 9.78 -39.27 -0.38 -1.10 16 28 C 0.06 0.98 5.44 -3.76 -0.02 0.96 16 29 C 0.07 1.37 5.43 -3.77 -0.02 1.35 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 31 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 32 H 0.03 0.82 8.03 -51.93 -0.42 0.40 16 33 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 1.26 8.07 -51.93 -0.42 0.84 16 35 H 0.07 0.86 8.03 -51.93 -0.42 0.44 16 36 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.76 5.58 -51.92 -0.29 0.47 16 38 H 0.04 0.40 8.04 -51.93 -0.42 -0.02 16 39 H 0.18 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.13 1.13 6.26 -52.49 -0.33 0.80 16 41 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 42 H 0.14 1.26 8.06 -52.48 -0.42 0.83 16 43 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 44 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.07 0.96 7.12 -51.93 -0.37 0.59 16 46 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.08 1.76 6.79 -51.93 -0.35 1.41 16 LS Contribution 386.45 15.07 5.82 5.82 Total: -1.00 -32.99 386.45 -12.13 -45.12 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -7.96 Total: -1.79 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -4.19 Total: -9.60 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: -0.82 Total: -54.54 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.99 -12.13 -45.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602750073.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.222 kcal (2) G-P(sol) polarization free energy of solvation -32.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds