Wall clock time and date at job start Wed Apr 1 2020 04:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99991 * 2 1 4 4 H 1.48498 * 109.47181 * 270.00347 * 3 2 1 5 5 H 1.48507 * 109.46632 * 30.00229 * 3 2 1 6 6 H 1.48500 * 109.47235 * 149.99972 * 3 2 1 7 7 C 1.37876 * 120.00190 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99723 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00054 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47101 * 180.02562 * 9 7 2 11 11 C 1.46949 * 110.99885 * 169.99798 * 10 9 7 12 12 C 1.53046 * 109.36770 * 183.18752 * 11 10 9 13 13 N 1.46961 * 109.36497 * 301.60168 * 12 11 10 14 14 C 1.46894 * 111.00212 * 183.18084 * 13 12 11 15 15 C 1.50701 * 109.47314 * 164.67146 * 14 13 12 16 16 C 1.35087 * 126.07517 * 105.73558 * 15 14 13 17 17 N 1.35031 * 107.97684 * 179.97438 * 16 15 14 18 18 H 0.97006 * 125.93177 * 179.97438 * 17 16 15 19 19 N 1.40076 * 108.14384 * 0.02562 * 17 16 15 20 20 C 1.31621 * 108.10383 * 359.97438 * 19 17 16 21 21 C 1.48419 * 126.03341 * 180.02562 * 20 19 17 22 22 C 1.39332 * 120.08984 * 136.66414 * 21 20 19 23 23 C 1.37987 * 119.89994 * 179.72079 * 22 21 20 24 24 C 1.38539 * 120.09712 * 0.57503 * 23 22 21 25 25 F 1.35102 * 119.90887 * 179.70077 * 24 23 22 26 26 C 1.38545 * 120.18716 * 359.67566 * 24 23 22 27 27 C 1.37979 * 120.09567 * 0.04567 * 26 24 23 28 28 C 1.46956 * 110.87856 * 59.31770 * 13 12 11 29 29 C 1.46951 * 110.99880 * 293.79686 * 10 9 7 30 30 H 0.96994 * 120.00320 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.47370 * 60.00160 * 9 7 2 32 32 H 1.08998 * 109.47180 * 300.00077 * 9 7 2 33 33 H 1.09001 * 109.48939 * 63.21914 * 11 10 9 34 34 H 1.09006 * 109.49256 * 303.15672 * 11 10 9 35 35 H 1.08997 * 109.49297 * 181.63019 * 12 11 10 36 36 H 1.09006 * 109.48904 * 61.56263 * 12 11 10 37 37 H 1.09007 * 109.46901 * 44.67802 * 14 13 12 38 38 H 1.08996 * 109.48013 * 284.67499 * 14 13 12 39 39 H 1.08001 * 126.00785 * 0.25200 * 16 15 14 40 40 H 1.07996 * 120.05184 * 359.97438 * 22 21 20 41 41 H 1.08002 * 119.95268 * 180.25070 * 23 22 21 42 42 H 1.08005 * 119.94813 * 180.02562 * 26 24 23 43 43 H 1.08002 * 120.04999 * 179.97438 * 27 26 24 44 44 H 1.08996 * 109.49483 * 60.64697 * 28 13 12 45 45 H 1.08997 * 109.48844 * 180.71344 * 28 13 12 46 46 H 1.08994 * 109.49299 * 296.78019 * 29 10 9 47 47 H 1.09004 * 109.48745 * 56.84697 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2058 -3.6157 -0.0005 11 6 1.5211 -4.8939 0.2377 12 6 2.5566 -6.0187 0.3094 13 7 3.3196 -6.0592 -0.9459 14 6 4.2743 -7.1756 -0.9459 15 6 4.7599 -7.4215 -2.3512 16 6 5.9765 -7.0973 -2.8406 17 7 6.0213 -7.4816 -4.1343 18 1 6.7754 -7.3726 -4.7347 19 7 4.7895 -8.0640 -4.4592 20 6 4.0258 -8.0303 -3.3877 21 6 2.6366 -8.5434 -3.2891 22 6 2.2404 -9.2768 -2.1726 23 6 0.9463 -9.7470 -2.0824 24 6 0.0449 -9.5012 -3.1053 25 9 -1.2195 -9.9686 -3.0157 26 6 0.4362 -8.7769 -4.2196 27 6 1.7267 -8.2980 -4.3154 28 6 4.0043 -4.7809 -1.1842 29 6 2.9687 -3.6562 -1.2558 30 1 -0.4850 0.8400 0.0004 31 1 0.6241 -2.5568 -0.8902 32 1 0.6248 -2.5571 0.8897 33 1 0.8255 -5.0915 -0.5779 34 1 0.9735 -4.8433 1.1789 35 1 2.0487 -6.9717 0.4572 36 1 3.2358 -5.8352 1.1420 37 1 3.7838 -8.0731 -0.5688 38 1 5.1220 -6.9291 -0.3066 39 1 6.7747 -6.6193 -2.2921 40 1 2.9439 -9.4733 -1.3772 41 1 0.6371 -10.3121 -1.2155 42 1 -0.2698 -8.5871 -5.0146 43 1 2.0311 -7.7338 -5.1845 44 1 4.6999 -4.5833 -0.3686 45 1 4.5519 -4.8315 -2.1252 46 1 2.2897 -3.8397 -2.0884 47 1 3.4766 -2.7031 -1.4036 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602750073.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:53 Heat of formation + Delta-G solvation = 48.886818 kcal Electronic energy + Delta-G solvation = -30007.285959 eV Core-core repulsion = 25912.128906 eV Total energy + Delta-G solvation = -4095.157053 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.171 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.86587 -42.21853 -39.96190 -39.64599 -36.71254 -34.64143 -33.55946 -32.33837 -31.95297 -31.55854 -30.27676 -29.60576 -27.27744 -25.10698 -24.48324 -24.25495 -23.86977 -23.10228 -21.66349 -20.67726 -20.52052 -18.64352 -18.61051 -18.46369 -17.25019 -17.11244 -16.68597 -16.55167 -16.41327 -15.90532 -15.77743 -15.59390 -15.38919 -15.22004 -15.07510 -14.76307 -14.51767 -14.33884 -14.11676 -14.01886 -13.58580 -13.38792 -13.24278 -13.15611 -12.98587 -12.71879 -12.63941 -12.28516 -12.21124 -12.05640 -12.02603 -11.78699 -11.56583 -11.42687 -11.14795 -10.71190 -10.61809 -10.03793 -9.61780 -9.24351 -9.11379 -8.95794 -8.20008 -6.30684 -0.03180 0.33028 1.03017 1.40872 1.42620 1.54255 1.71833 2.01263 2.40516 2.72503 3.12120 3.18864 3.31226 3.35017 3.53126 3.80669 3.96786 4.01378 4.09577 4.14556 4.30005 4.31245 4.40849 4.44817 4.47969 4.56265 4.57834 4.73487 4.76190 4.85846 4.95018 4.95839 5.02356 5.05155 5.08439 5.11524 5.17308 5.18755 5.20816 5.26147 5.32186 5.50359 5.62635 5.64656 5.92491 6.04483 6.20723 6.24682 6.41873 6.47517 6.65780 6.71378 6.85670 7.39232 8.91472 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.010710 B = 0.003037 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.639405 B = 9216.901927 C =10664.067793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.000 4.000 3 Si 0.971 3.029 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.522 4.522 8 H 0.065 0.935 9 C 0.208 3.792 10 N -0.539 5.539 11 C 0.054 3.946 12 C 0.075 3.925 13 N -0.541 5.541 14 C 0.133 3.867 15 C -0.228 4.228 16 C 0.079 3.921 17 N -0.465 5.465 18 H 0.454 0.546 19 N -0.319 5.319 20 C 0.122 3.878 21 C -0.018 4.018 22 C -0.062 4.062 23 C -0.148 4.148 24 C 0.082 3.918 25 F -0.149 7.149 26 C -0.159 4.159 27 C -0.078 4.078 28 C 0.080 3.920 29 C 0.071 3.929 30 H 0.264 0.736 31 H -0.046 1.046 32 H 0.003 0.997 33 H 0.012 0.988 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.044 0.956 37 H 0.093 0.907 38 H 0.058 0.942 39 H 0.212 0.788 40 H 0.156 0.844 41 H 0.160 0.840 42 H 0.145 0.855 43 H 0.129 0.871 44 H 0.043 0.957 45 H 0.081 0.919 46 H 0.003 0.997 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.613 -22.002 -5.237 25.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.198 4.198 3 Si 0.795 3.205 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.560 4.560 8 H 0.083 0.917 9 C 0.082 3.918 10 N -0.263 5.263 11 C -0.074 4.074 12 C -0.053 4.053 13 N -0.266 5.266 14 C 0.005 3.995 15 C -0.240 4.240 16 C -0.069 4.069 17 N -0.175 5.175 18 H 0.301 0.699 19 N -0.143 5.143 20 C -0.043 4.043 21 C -0.020 4.020 22 C -0.081 4.081 23 C -0.166 4.166 24 C 0.063 3.937 25 F -0.127 7.127 26 C -0.177 4.177 27 C -0.097 4.097 28 C -0.048 4.048 29 C -0.057 4.057 30 H 0.073 0.927 31 H -0.029 1.029 32 H 0.021 0.979 33 H 0.030 0.970 34 H 0.087 0.913 35 H 0.116 0.884 36 H 0.062 0.938 37 H 0.111 0.889 38 H 0.076 0.924 39 H 0.229 0.771 40 H 0.173 0.827 41 H 0.178 0.822 42 H 0.163 0.837 43 H 0.147 0.853 44 H 0.061 0.939 45 H 0.099 0.901 46 H 0.021 0.979 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.542 -22.252 -6.452 26.345 hybrid contribution -0.348 1.576 0.171 1.623 sum 12.195 -20.676 -6.281 24.812 Atomic orbital electron populations 1.70097 1.07874 1.27901 1.51833 1.25951 0.95723 1.03320 0.94770 0.85364 0.78657 0.78100 0.78386 1.19914 1.20759 1.18560 1.21450 0.93615 0.90948 1.49981 0.91730 1.19345 0.90154 0.89304 0.93010 1.62240 1.27014 1.02959 1.34136 1.22162 0.95938 0.89856 0.99469 1.22033 0.95182 0.97740 0.90342 1.62065 1.26856 1.03196 1.34508 1.20388 0.94282 0.93797 0.91035 1.20060 0.94626 1.11269 0.98007 1.22888 0.99601 0.98672 0.85781 1.46201 1.13327 1.47457 1.10486 0.69932 1.77510 0.93056 1.21179 1.22570 1.20563 0.93499 0.98618 0.91611 1.17922 0.89813 0.98762 0.95518 1.21146 0.95444 0.94731 0.96758 1.21281 0.93125 1.02983 0.99240 1.18017 0.79691 0.99009 0.96999 1.91477 1.37903 1.86847 1.96499 1.21193 0.97613 1.00308 0.98632 1.21080 0.92183 0.98049 0.98407 1.21946 0.94288 0.87763 1.00808 1.21944 0.95716 0.98611 0.89473 0.92714 1.02877 0.97896 0.96994 0.91330 0.88399 0.93786 0.88874 0.92371 0.77111 0.82668 0.82247 0.83691 0.85318 0.93908 0.90096 0.97875 0.91806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.58 13.29 21.45 0.28 -57.30 16 2 C 0.00 0.01 5.46 84.66 0.46 0.47 16 3 Si 0.97 44.55 29.54 68.60 2.03 46.58 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.52 -30.09 8.47 25.60 0.22 -29.87 16 8 H 0.06 3.61 7.13 -2.91 -0.02 3.59 16 9 C 0.21 11.55 4.72 85.56 0.40 11.96 16 10 N -0.54 -23.93 4.70 -900.30 -4.23 -28.16 16 11 C 0.05 2.01 5.61 86.31 0.48 2.49 16 12 C 0.07 2.00 5.59 86.31 0.48 2.48 16 13 N -0.54 -13.86 4.66 -900.28 -4.20 -18.05 16 14 C 0.13 2.39 4.96 85.56 0.42 2.81 16 15 C -0.23 -4.28 4.79 -19.95 -0.10 -4.37 16 16 C 0.08 1.09 11.52 83.48 0.96 2.05 16 17 N -0.47 -7.05 7.35 -57.68 -0.42 -7.47 16 18 H 0.45 3.79 8.96 -213.33 -1.91 1.88 16 19 N -0.32 -7.28 12.74 -48.16 -0.61 -7.90 16 20 C 0.12 2.76 6.66 42.53 0.28 3.05 16 21 C -0.02 -0.41 5.74 -20.04 -0.11 -0.52 16 22 C -0.06 -1.15 8.89 22.47 0.20 -0.95 16 23 C -0.15 -2.76 10.01 22.28 0.22 -2.53 16 24 C 0.08 1.85 7.30 22.41 0.16 2.01 16 25 F -0.15 -3.56 17.26 44.97 0.78 -2.79 16 26 C -0.16 -3.56 10.01 22.28 0.22 -3.34 16 27 C -0.08 -1.84 9.78 22.47 0.22 -1.62 16 28 C 0.08 2.33 5.44 86.31 0.47 2.80 16 29 C 0.07 2.86 5.43 86.31 0.47 3.33 16 30 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 31 H -0.05 -2.86 8.12 -2.39 -0.02 -2.88 16 32 H 0.00 0.17 8.03 -2.39 -0.02 0.16 16 33 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.07 2.51 8.07 -2.38 -0.02 2.49 16 35 H 0.10 2.09 8.03 -2.39 -0.02 2.07 16 36 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.09 1.40 5.58 -2.38 -0.01 1.39 16 38 H 0.06 0.88 8.04 -2.39 -0.02 0.86 16 39 H 0.21 1.28 8.06 -2.91 -0.02 1.25 16 40 H 0.16 2.12 6.26 -2.91 -0.02 2.10 16 41 H 0.16 2.16 8.06 -2.91 -0.02 2.13 16 42 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 43 H 0.13 3.01 8.06 -2.91 -0.02 2.99 16 44 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.08 2.13 7.12 -2.39 -0.02 2.11 16 46 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 47 H 0.06 2.76 6.79 -2.39 -0.02 2.74 16 Total: -1.00 -74.15 386.45 -1.82 -75.96 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -0.92 Total: 8.88 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: 5.48 Total: -9.76 kcal Atomic # 7 Polarization: -109.70 SS G_CDS: -9.18 Total: -118.88 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.78 Total: -2.79 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -74.15 -1.82 -75.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602750073.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.852 kcal (2) G-P(sol) polarization free energy of solvation -74.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds