Wall clock time and date at job start Wed Apr 1 2020 04:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 119.99889 * 2 1 4 4 H 1.48503 * 109.46780 * 269.99764 * 3 2 1 5 5 H 1.48494 * 109.47370 * 29.99678 * 3 2 1 6 6 H 1.48499 * 109.47391 * 150.00140 * 3 2 1 7 7 C 1.38813 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00148 * 163.07435 * 7 2 1 9 9 N 1.36928 * 119.99804 * 343.07514 * 7 2 1 10 10 C 1.46926 * 120.63465 * 331.84518 * 9 7 2 11 11 C 1.53189 * 108.77835 * 233.58671 * 10 9 7 12 12 C 1.53037 * 109.31543 * 305.36545 * 11 10 9 13 13 N 1.46896 * 109.46098 * 181.38394 * 12 11 10 14 14 C 1.46901 * 110.99838 * 154.99795 * 13 12 11 15 15 C 1.50701 * 109.47308 * 179.97438 * 14 13 12 16 16 C 1.35091 * 126.07849 * 260.31379 * 15 14 13 17 17 N 1.35041 * 107.97773 * 180.12726 * 16 15 14 18 18 H 0.97000 * 125.92776 * 179.87379 * 17 16 15 19 19 N 1.40070 * 108.14046 * 359.60463 * 17 16 15 20 20 C 1.31616 * 108.10974 * 0.24146 * 19 17 16 21 21 C 1.48420 * 126.04311 * 179.97438 * 20 19 17 22 22 C 1.39330 * 120.09655 * 144.69733 * 21 20 19 23 23 C 1.37985 * 119.90177 * 179.79166 * 22 21 20 24 24 C 1.38543 * 120.09737 * 0.49835 * 23 22 21 25 25 F 1.35100 * 119.90700 * 179.76552 * 24 23 22 26 26 C 1.38540 * 120.18749 * 359.73507 * 24 23 22 27 27 C 1.37986 * 120.09474 * 0.02571 * 26 24 23 28 28 C 1.53042 * 109.53893 * 61.36058 * 12 11 10 29 29 C 1.46933 * 120.63261 * 151.82665 * 9 7 2 30 30 H 0.97003 * 120.00331 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.58574 * 113.79901 * 10 9 7 32 32 H 1.08998 * 109.70130 * 353.44820 * 10 9 7 33 33 H 1.09003 * 109.50108 * 185.40995 * 11 10 9 34 34 H 1.09005 * 109.49418 * 65.31700 * 11 10 9 35 35 H 1.09003 * 109.45506 * 301.35575 * 12 11 10 36 36 H 1.00901 * 111.00411 * 278.95242 * 13 12 11 37 37 H 1.08999 * 109.47084 * 60.00136 * 14 13 12 38 38 H 1.08999 * 109.47482 * 299.99978 * 14 13 12 39 39 H 1.07993 * 126.01049 * 0.02562 * 16 15 14 40 40 H 1.07999 * 120.04712 * 0.03333 * 22 21 20 41 41 H 1.08006 * 119.94976 * 180.20970 * 23 22 21 42 42 H 1.08000 * 119.95417 * 180.02562 * 26 24 23 43 43 H 1.08003 * 120.04515 * 179.97438 * 27 26 24 44 44 H 1.08999 * 109.49345 * 58.59161 * 28 12 11 45 45 H 1.08997 * 109.49996 * 178.68110 * 28 12 11 46 46 H 1.08997 * 109.58372 * 246.20569 * 29 9 7 47 47 H 1.09002 * 109.58152 * 6.47775 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0552 -1.2225 -0.2718 9 7 1.3701 -2.3621 0.3463 10 6 0.2261 -2.3398 1.2679 11 6 0.4974 -3.3189 2.4145 12 6 0.8120 -4.7005 1.8366 13 7 1.0402 -5.6498 2.9342 14 6 0.7600 -7.0268 2.5061 15 6 1.0052 -7.9700 3.6555 16 6 2.1113 -8.7219 3.8456 17 7 1.9436 -9.4298 4.9833 18 1 2.5801 -10.0554 5.3634 19 7 0.6939 -9.0991 5.5225 20 6 0.1244 -8.2196 4.7260 21 6 -1.2105 -7.6007 4.9208 22 6 -1.4285 -6.2770 4.5445 23 6 -2.6723 -5.7069 4.7234 24 6 -3.7006 -6.4455 5.2858 25 9 -4.9156 -5.8821 5.4636 26 6 -3.4868 -7.7605 5.6659 27 6 -2.2475 -8.3400 5.4860 28 6 2.0674 -4.6172 0.9653 29 6 1.8139 -3.6529 -0.1977 30 1 -0.4851 0.8400 -0.0004 31 1 -0.6770 -2.6405 0.7367 32 1 0.0966 -1.3345 1.6687 33 1 -0.3832 -3.3837 3.0536 34 1 1.3471 -2.9672 2.9997 35 1 -0.0282 -5.0407 1.2310 36 1 1.9790 -5.5671 3.2945 37 1 1.4148 -7.2893 1.6752 38 1 -0.2797 -7.1040 2.1877 39 1 2.9767 -8.7527 3.2003 40 1 -0.6262 -5.6993 4.1098 41 1 -2.8430 -4.6819 4.4289 42 1 -4.2913 -8.3330 6.1036 43 1 -2.0816 -9.3650 5.7829 44 1 2.9023 -4.2534 1.5642 45 1 2.3043 -5.6061 0.5729 46 1 1.0403 -4.0605 -0.8484 47 1 2.7332 -3.5130 -0.7663 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609334726.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:59 Heat of formation + Delta-G solvation = 76.630593 kcal Electronic energy + Delta-G solvation = -29792.946423 eV Core-core repulsion = 25698.992431 eV Total energy + Delta-G solvation = -4093.953993 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.171 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -48.91063 -41.46344 -38.77237 -38.12465 -35.34200 -32.96438 -32.33876 -31.15394 -30.81545 -29.88219 -29.42228 -28.71205 -25.41130 -23.90868 -23.56940 -22.98008 -22.09491 -21.33520 -20.83971 -19.96071 -19.24735 -17.98697 -17.63829 -16.75825 -16.21613 -15.85692 -15.60511 -15.23169 -15.04778 -14.77498 -14.50402 -14.16844 -13.94111 -13.66461 -13.63032 -13.43821 -13.34967 -13.09075 -12.93383 -12.54107 -12.40562 -12.22743 -12.08720 -11.79090 -11.37205 -11.16054 -11.04435 -10.77749 -10.73578 -10.68463 -10.24884 -10.21679 -10.00629 -9.97689 -9.71946 -9.49180 -9.12251 -8.86121 -8.47373 -8.36486 -8.07124 -6.65081 -5.77382 -3.19611 0.80996 1.24983 1.72233 2.55573 2.61402 3.38120 3.45547 3.47550 3.65177 4.21548 4.27702 4.46605 4.50963 4.67482 4.77297 4.86197 5.03268 5.09329 5.29299 5.31530 5.38012 5.43346 5.51903 5.55843 5.63705 5.68969 5.85461 5.89444 5.96910 5.97067 6.05418 6.10939 6.28122 6.31656 6.45702 6.47853 6.49946 6.59683 6.63555 6.70786 6.84298 6.88749 6.95090 7.02075 7.30506 7.39161 7.42889 7.61371 7.71037 7.81202 8.47186 9.23443 9.86892 10.43559 11.31063 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.011465 B = 0.002902 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.527247 B = 9647.274198 C =11652.837599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.900 3.100 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.253 4.253 8 H 0.063 0.937 9 N -0.592 5.592 10 C 0.171 3.829 11 C -0.126 4.126 12 C 0.093 3.907 13 N -0.683 5.683 14 C 0.130 3.870 15 C -0.215 4.215 16 C 0.063 3.937 17 N -0.476 5.476 18 H 0.440 0.560 19 N -0.288 5.288 20 C 0.138 3.862 21 C -0.033 4.033 22 C -0.066 4.066 23 C -0.156 4.156 24 C 0.103 3.897 25 F -0.142 7.142 26 C -0.166 4.166 27 C -0.067 4.067 28 C -0.158 4.158 29 C 0.149 3.851 30 H 0.254 0.746 31 H 0.017 0.983 32 H 0.087 0.913 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.340 0.660 37 H 0.038 0.962 38 H 0.079 0.921 39 H 0.177 0.823 40 H 0.181 0.819 41 H 0.140 0.860 42 H 0.133 0.867 43 H 0.131 0.869 44 H 0.059 0.941 45 H 0.045 0.955 46 H 0.016 0.984 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.082 -20.117 9.911 22.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.730 3.270 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.383 4.383 8 H 0.081 0.919 9 N -0.315 5.315 10 C 0.045 3.955 11 C -0.165 4.165 12 C -0.016 4.016 13 N -0.313 5.313 14 C 0.001 3.999 15 C -0.227 4.227 16 C -0.085 4.085 17 N -0.184 5.184 18 H 0.284 0.716 19 N -0.112 5.112 20 C -0.027 4.027 21 C -0.036 4.036 22 C -0.085 4.085 23 C -0.174 4.174 24 C 0.084 3.916 25 F -0.120 7.120 26 C -0.185 4.185 27 C -0.087 4.087 28 C -0.199 4.199 29 C 0.022 3.978 30 H 0.064 0.936 31 H 0.035 0.965 32 H 0.106 0.894 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.158 0.842 37 H 0.056 0.944 38 H 0.098 0.902 39 H 0.194 0.806 40 H 0.198 0.802 41 H 0.158 0.842 42 H 0.151 0.849 43 H 0.149 0.851 44 H 0.077 0.923 45 H 0.064 0.936 46 H 0.033 0.967 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.783 -20.550 11.235 23.434 hybrid contribution 1.488 0.782 -1.073 1.995 sum 0.705 -19.767 10.162 22.238 Atomic orbital electron populations 1.70024 1.05229 1.25484 1.53843 1.25030 0.95263 0.98348 1.00917 0.86336 0.79192 0.83805 0.77664 1.21468 1.21531 1.20541 1.19144 0.92462 0.84893 1.41777 0.91904 1.44057 1.35930 1.01394 1.50105 1.20790 0.88486 0.98274 0.87989 1.22199 1.00491 0.94118 0.99741 1.21580 0.97059 0.92792 0.90133 1.60676 1.32428 1.03542 1.34659 1.20204 1.01404 0.86507 0.91833 1.20078 0.95247 1.06057 1.01274 1.22357 0.99982 0.95373 0.90781 1.46150 1.15874 1.36756 1.19640 0.71640 1.77549 0.93660 1.18789 1.21179 1.20500 0.94247 0.95052 0.92918 1.17829 0.89672 0.93960 1.02109 1.22214 0.97918 0.93866 0.94481 1.21249 0.92621 1.01427 1.02149 1.17939 0.80860 0.92283 1.00540 1.91496 1.42036 1.85264 1.93236 1.20971 0.98744 0.94001 1.04762 1.21029 0.91374 0.99915 0.96368 1.22664 0.98417 0.98884 0.99941 1.20806 0.97476 0.86987 0.92543 0.93635 0.96517 0.89442 0.92732 0.92800 0.91070 0.84220 0.94362 0.90239 0.80641 0.80175 0.84168 0.84869 0.85143 0.92266 0.93615 0.96653 0.93077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.87 11.19 55.49 0.62 -25.25 16 2 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 3 Si 0.90 21.49 29.59 -169.99 -5.03 16.46 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.25 -6.84 9.58 -15.06 -0.14 -6.99 16 8 H 0.06 1.67 7.89 -52.49 -0.41 1.26 16 9 N -0.59 -14.39 2.99 -172.32 -0.52 -14.91 16 10 C 0.17 3.93 5.30 -3.71 -0.02 3.91 16 11 C -0.13 -2.25 5.69 -26.61 -0.15 -2.40 16 12 C 0.09 1.40 2.43 -67.67 -0.16 1.23 16 13 N -0.68 -8.28 3.79 -107.95 -0.41 -8.69 16 14 C 0.13 1.41 4.89 -4.97 -0.02 1.38 16 15 C -0.21 -2.27 5.58 -104.75 -0.59 -2.86 16 16 C 0.06 0.51 11.88 -17.26 -0.21 0.31 16 17 N -0.48 -3.97 7.35 30.42 0.22 -3.75 16 18 H 0.44 2.15 8.96 -182.62 -1.64 0.51 16 19 N -0.29 -3.39 12.70 33.43 0.42 -2.97 16 20 C 0.14 1.67 6.74 -82.78 -0.56 1.11 16 21 C -0.03 -0.41 5.80 -104.89 -0.61 -1.02 16 22 C -0.07 -0.82 8.78 -39.27 -0.34 -1.16 16 23 C -0.16 -1.91 10.01 -39.56 -0.40 -2.31 16 24 C 0.10 1.25 7.30 -39.36 -0.29 0.97 16 25 F -0.14 -1.81 17.26 2.25 0.04 -1.77 16 26 C -0.17 -1.77 10.01 -39.56 -0.40 -2.17 16 27 C -0.07 -0.74 9.75 -39.27 -0.38 -1.12 16 28 C -0.16 -2.49 5.33 -26.61 -0.14 -2.63 16 29 C 0.15 2.99 6.52 -3.71 -0.02 2.97 16 30 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 2.29 6.07 -51.93 -0.31 1.97 16 33 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.07 1.12 7.80 -51.93 -0.40 0.72 16 36 H 0.34 4.03 8.47 -39.29 -0.33 3.70 16 37 H 0.04 0.39 7.40 -51.93 -0.38 0.00 16 38 H 0.08 0.93 7.69 -51.93 -0.40 0.53 16 39 H 0.18 0.85 8.06 -52.49 -0.42 0.43 16 40 H 0.18 2.34 4.72 -52.49 -0.25 2.09 16 41 H 0.14 1.63 8.06 -52.48 -0.42 1.20 16 42 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 43 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 44 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.05 0.61 7.42 -51.93 -0.39 0.23 16 46 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.05 1.02 7.93 -51.93 -0.41 0.61 16 LS Contribution 382.30 15.07 5.76 5.76 Total: -1.00 -30.79 382.30 -11.28 -42.07 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -7.87 Total: 3.84 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -4.52 Total: -10.79 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: 0.34 Total: -55.56 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.79 -11.28 -42.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609334726.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.697 kcal (2) G-P(sol) polarization free energy of solvation -30.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds