Wall clock time and date at job start Wed Apr 1 2020 04:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 119.99889 * 2 1 4 4 H 1.48503 * 109.46780 * 269.99764 * 3 2 1 5 5 H 1.48494 * 109.47370 * 29.99678 * 3 2 1 6 6 H 1.48499 * 109.47391 * 150.00140 * 3 2 1 7 7 C 1.38813 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00148 * 163.07435 * 7 2 1 9 9 N 1.36928 * 119.99804 * 343.07514 * 7 2 1 10 10 C 1.46926 * 120.63465 * 331.84518 * 9 7 2 11 11 C 1.53189 * 108.77835 * 233.58671 * 10 9 7 12 12 C 1.53037 * 109.31543 * 305.36545 * 11 10 9 13 13 N 1.46896 * 109.46098 * 181.38394 * 12 11 10 14 14 C 1.46901 * 110.99838 * 154.99795 * 13 12 11 15 15 C 1.50701 * 109.47308 * 179.97438 * 14 13 12 16 16 C 1.35091 * 126.07849 * 260.31379 * 15 14 13 17 17 N 1.35041 * 107.97773 * 180.12726 * 16 15 14 18 18 H 0.97000 * 125.92776 * 179.87379 * 17 16 15 19 19 N 1.40070 * 108.14046 * 359.60463 * 17 16 15 20 20 C 1.31616 * 108.10974 * 0.24146 * 19 17 16 21 21 C 1.48420 * 126.04311 * 179.97438 * 20 19 17 22 22 C 1.39330 * 120.09655 * 144.69733 * 21 20 19 23 23 C 1.37985 * 119.90177 * 179.79166 * 22 21 20 24 24 C 1.38543 * 120.09737 * 0.49835 * 23 22 21 25 25 F 1.35100 * 119.90700 * 179.76552 * 24 23 22 26 26 C 1.38540 * 120.18749 * 359.73507 * 24 23 22 27 27 C 1.37986 * 120.09474 * 0.02571 * 26 24 23 28 28 C 1.53042 * 109.53893 * 61.36058 * 12 11 10 29 29 C 1.46933 * 120.63261 * 151.82665 * 9 7 2 30 30 H 0.97003 * 120.00331 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.58574 * 113.79901 * 10 9 7 32 32 H 1.08998 * 109.70130 * 353.44820 * 10 9 7 33 33 H 1.09003 * 109.50108 * 185.40995 * 11 10 9 34 34 H 1.09005 * 109.49418 * 65.31700 * 11 10 9 35 35 H 1.09003 * 109.45506 * 301.35575 * 12 11 10 36 36 H 1.00901 * 111.00411 * 278.95242 * 13 12 11 37 37 H 1.08999 * 109.47084 * 60.00136 * 14 13 12 38 38 H 1.08999 * 109.47482 * 299.99978 * 14 13 12 39 39 H 1.07993 * 126.01049 * 0.02562 * 16 15 14 40 40 H 1.07999 * 120.04712 * 0.03333 * 22 21 20 41 41 H 1.08006 * 119.94976 * 180.20970 * 23 22 21 42 42 H 1.08000 * 119.95417 * 180.02562 * 26 24 23 43 43 H 1.08003 * 120.04515 * 179.97438 * 27 26 24 44 44 H 1.08999 * 109.49345 * 58.59161 * 28 12 11 45 45 H 1.08997 * 109.49996 * 178.68110 * 28 12 11 46 46 H 1.08997 * 109.58372 * 246.20569 * 29 9 7 47 47 H 1.09002 * 109.58152 * 6.47775 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0552 -1.2225 -0.2718 9 7 1.3701 -2.3621 0.3463 10 6 0.2261 -2.3398 1.2679 11 6 0.4974 -3.3189 2.4145 12 6 0.8120 -4.7005 1.8366 13 7 1.0402 -5.6498 2.9342 14 6 0.7600 -7.0268 2.5061 15 6 1.0052 -7.9700 3.6555 16 6 2.1113 -8.7219 3.8456 17 7 1.9436 -9.4298 4.9833 18 1 2.5801 -10.0554 5.3634 19 7 0.6939 -9.0991 5.5225 20 6 0.1244 -8.2196 4.7260 21 6 -1.2105 -7.6007 4.9208 22 6 -1.4285 -6.2770 4.5445 23 6 -2.6723 -5.7069 4.7234 24 6 -3.7006 -6.4455 5.2858 25 9 -4.9156 -5.8821 5.4636 26 6 -3.4868 -7.7605 5.6659 27 6 -2.2475 -8.3400 5.4860 28 6 2.0674 -4.6172 0.9653 29 6 1.8139 -3.6529 -0.1977 30 1 -0.4851 0.8400 -0.0004 31 1 -0.6770 -2.6405 0.7367 32 1 0.0966 -1.3345 1.6687 33 1 -0.3832 -3.3837 3.0536 34 1 1.3471 -2.9672 2.9997 35 1 -0.0282 -5.0407 1.2310 36 1 1.9790 -5.5671 3.2945 37 1 1.4148 -7.2893 1.6752 38 1 -0.2797 -7.1040 2.1877 39 1 2.9767 -8.7527 3.2003 40 1 -0.6262 -5.6993 4.1098 41 1 -2.8430 -4.6819 4.4289 42 1 -4.2913 -8.3330 6.1036 43 1 -2.0816 -9.3650 5.7829 44 1 2.9023 -4.2534 1.5642 45 1 2.3043 -5.6061 0.5729 46 1 1.0403 -4.0605 -0.8484 47 1 2.7332 -3.5130 -0.7663 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609334726.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:58 Heat of formation + Delta-G solvation = 59.123726 kcal Electronic energy + Delta-G solvation = -29793.705578 eV Core-core repulsion = 25698.992431 eV Total energy + Delta-G solvation = -4094.713147 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.171 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.87374 -42.20186 -39.68725 -39.49838 -36.74803 -34.30219 -33.44546 -32.32300 -31.96601 -31.38753 -30.28228 -30.01934 -26.90126 -25.24315 -24.42331 -23.93304 -23.59758 -22.85496 -21.62380 -20.99216 -20.52128 -18.92127 -18.56620 -18.46503 -17.11980 -16.88135 -16.68235 -16.56276 -16.15815 -16.01669 -15.61834 -15.26540 -15.13459 -15.12270 -14.82861 -14.68022 -14.48977 -14.21398 -14.01484 -13.80916 -13.58625 -13.30810 -13.21909 -13.00847 -12.90150 -12.65463 -12.53097 -12.36904 -12.06179 -11.93802 -11.84706 -11.71802 -11.53763 -11.31340 -11.10065 -10.78545 -10.50437 -10.01597 -9.64714 -9.23939 -9.08268 -8.62715 -7.83904 -5.28679 -0.08138 0.36120 1.03270 1.47498 1.49619 1.58799 1.73591 2.00524 2.53809 2.76088 3.29139 3.31990 3.42761 3.59298 3.77119 3.85941 3.98285 4.02856 4.06232 4.24523 4.26266 4.40693 4.47640 4.50264 4.54406 4.63629 4.77571 4.80538 4.84949 4.95908 5.00766 5.05577 5.12644 5.13192 5.18135 5.22199 5.27184 5.35851 5.40588 5.44095 5.58560 5.60321 5.63823 5.70303 5.82397 5.98140 6.23130 6.43655 6.47276 6.63082 6.71176 7.19448 7.92045 8.42737 9.22094 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.011465 B = 0.002902 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.527247 B = 9647.274198 C =11652.837599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.051 4.051 3 Si 0.964 3.036 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.270 1.270 7 C -0.262 4.262 8 H 0.065 0.935 9 N -0.611 5.611 10 C 0.178 3.822 11 C -0.111 4.111 12 C 0.109 3.891 13 N -0.677 5.677 14 C 0.138 3.862 15 C -0.238 4.238 16 C 0.085 3.915 17 N -0.464 5.464 18 H 0.455 0.545 19 N -0.317 5.317 20 C 0.121 3.879 21 C -0.039 4.039 22 C -0.074 4.074 23 C -0.165 4.165 24 C 0.088 3.912 25 F -0.149 7.149 26 C -0.158 4.158 27 C -0.069 4.069 28 C -0.142 4.142 29 C 0.143 3.857 30 H 0.249 0.751 31 H -0.007 1.007 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.047 0.953 35 H 0.066 0.934 36 H 0.346 0.654 37 H 0.055 0.945 38 H 0.067 0.933 39 H 0.216 0.784 40 H 0.176 0.824 41 H 0.139 0.861 42 H 0.156 0.844 43 H 0.144 0.856 44 H 0.057 0.943 45 H 0.080 0.920 46 H 0.011 0.989 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.067 -22.519 10.470 24.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.246 4.246 3 Si 0.792 3.208 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.195 1.195 7 C -0.392 4.392 8 H 0.082 0.918 9 N -0.334 5.334 10 C 0.052 3.948 11 C -0.151 4.151 12 C -0.001 4.001 13 N -0.307 5.307 14 C 0.009 3.991 15 C -0.249 4.249 16 C -0.064 4.064 17 N -0.173 5.173 18 H 0.302 0.698 19 N -0.141 5.141 20 C -0.043 4.043 21 C -0.041 4.041 22 C -0.093 4.093 23 C -0.184 4.184 24 C 0.068 3.932 25 F -0.127 7.127 26 C -0.177 4.177 27 C -0.088 4.088 28 C -0.183 4.183 29 C 0.017 3.983 30 H 0.058 0.942 31 H 0.011 0.989 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.165 0.835 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.233 0.767 40 H 0.193 0.807 41 H 0.157 0.843 42 H 0.174 0.826 43 H 0.162 0.838 44 H 0.076 0.924 45 H 0.099 0.901 46 H 0.029 0.971 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.228 -23.003 11.815 25.889 hybrid contribution 0.917 1.419 -1.262 2.109 sum 2.145 -21.584 10.553 24.121 Atomic orbital electron populations 1.70182 1.06630 1.25715 1.55490 1.25770 0.95998 1.01408 1.01460 0.85339 0.78141 0.79839 0.77501 1.21234 1.22006 1.19537 1.19485 0.92750 0.86195 1.40772 0.91766 1.44332 1.35960 1.02311 1.50847 1.20570 0.87570 0.97588 0.89077 1.21941 1.00678 0.94812 0.97644 1.21242 0.96650 0.91689 0.90513 1.60520 1.32947 1.04062 1.33207 1.20114 1.01110 0.85364 0.92538 1.20093 0.96177 1.07366 1.01304 1.22897 1.00015 0.93212 0.90228 1.46209 1.15115 1.36491 1.19483 0.69806 1.77484 0.95208 1.19369 1.22035 1.20581 0.94423 0.95582 0.93761 1.18015 0.90483 0.93870 1.01771 1.22144 0.97707 0.94246 0.95233 1.21315 0.92967 1.01591 1.02523 1.18098 0.80630 0.93027 1.01451 1.91475 1.42384 1.85484 1.93399 1.21208 0.99322 0.93418 1.03728 1.21205 0.91145 1.00444 0.96029 1.22495 0.98470 0.99219 0.98087 1.20997 0.96989 0.86070 0.94286 0.94221 0.98876 0.93235 0.91717 0.93406 0.91605 0.83493 0.92651 0.91453 0.76734 0.80739 0.84327 0.82608 0.83840 0.92391 0.90120 0.97109 0.93209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.54 11.19 21.65 0.24 -55.30 16 2 C -0.05 -2.86 4.92 84.86 0.42 -2.44 16 3 Si 0.96 44.93 29.59 68.60 2.03 46.96 16 4 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 7 C -0.26 -14.33 9.58 84.04 0.81 -13.53 16 8 H 0.06 3.43 7.89 -2.91 -0.02 3.40 16 9 N -0.61 -30.13 2.99 -699.11 -2.09 -32.23 16 10 C 0.18 8.48 5.30 86.36 0.46 8.93 16 11 C -0.11 -3.98 5.69 30.67 0.17 -3.81 16 12 C 0.11 3.10 2.43 44.94 0.11 3.20 16 13 N -0.68 -14.88 3.79 -495.44 -1.88 -16.75 16 14 C 0.14 2.60 4.89 85.56 0.42 3.02 16 15 C -0.24 -4.35 5.58 -19.95 -0.11 -4.46 16 16 C 0.09 1.03 11.88 83.47 0.99 2.03 16 17 N -0.46 -6.18 7.35 -57.67 -0.42 -6.61 16 18 H 0.45 2.86 8.96 -213.34 -1.91 0.95 16 19 N -0.32 -6.77 12.70 -48.15 -0.61 -7.38 16 20 C 0.12 2.70 6.74 42.53 0.29 2.99 16 21 C -0.04 -0.92 5.80 -20.04 -0.12 -1.04 16 22 C -0.07 -1.83 8.78 22.47 0.20 -1.63 16 23 C -0.17 -4.12 10.01 22.28 0.22 -3.90 16 24 C 0.09 2.11 7.30 22.41 0.16 2.28 16 25 F -0.15 -3.82 17.26 44.97 0.78 -3.04 16 26 C -0.16 -3.22 10.01 22.28 0.22 -2.99 16 27 C -0.07 -1.44 9.75 22.47 0.22 -1.22 16 28 C -0.14 -4.12 5.33 30.67 0.16 -3.95 16 29 C 0.14 5.61 6.52 86.36 0.56 6.17 16 30 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 31 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 32 H 0.05 2.72 6.07 -2.39 -0.01 2.70 16 33 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 35 H 0.07 1.99 7.80 -2.39 -0.02 1.97 16 36 H 0.35 7.13 8.47 -89.69 -0.76 6.37 16 37 H 0.06 0.87 7.40 -2.39 -0.02 0.86 16 38 H 0.07 1.45 7.69 -2.39 -0.02 1.44 16 39 H 0.22 0.82 8.06 -2.91 -0.02 0.80 16 40 H 0.18 4.46 4.72 -2.91 -0.01 4.44 16 41 H 0.14 3.37 8.06 -2.91 -0.02 3.34 16 42 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 43 H 0.14 2.57 8.06 -2.91 -0.02 2.54 16 44 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.08 1.82 7.42 -2.39 -0.02 1.81 16 46 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 47 H 0.05 1.94 7.93 -2.39 -0.02 1.92 16 Total: -1.00 -68.95 382.30 1.57 -67.38 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -1.66 Total: 17.32 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: 5.19 Total: -10.34 kcal Atomic # 7 Polarization: -113.51 SS G_CDS: -4.76 Total: -118.27 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.78 Total: -3.04 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -68.95 1.57 -67.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609334726.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.500 kcal (2) G-P(sol) polarization free energy of solvation -68.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds