Wall clock time and date at job start Wed Apr 1 2020 04:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86805 * 120.00205 * 2 1 4 4 H 1.48502 * 109.46784 * 240.00531 * 3 2 1 5 5 H 1.48493 * 109.47072 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47182 * 120.00434 * 3 2 1 7 7 C 1.38810 * 120.00099 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00418 * 163.96229 * 7 2 1 9 9 N 1.36941 * 119.99938 * 343.96660 * 7 2 1 10 10 C 1.46923 * 120.62590 * 331.46403 * 9 7 2 11 11 C 1.53189 * 108.89379 * 233.51573 * 10 9 7 12 12 C 1.53075 * 109.29902 * 305.58194 * 11 10 9 13 13 N 1.46894 * 109.45739 * 181.24192 * 12 11 10 14 14 C 1.46896 * 111.00021 * 84.79002 * 13 12 11 15 15 C 1.50703 * 109.47325 * 180.02562 * 14 13 12 16 16 C 1.35086 * 126.07773 * 255.30861 * 15 14 13 17 17 N 1.35030 * 107.97940 * 179.97438 * 16 15 14 18 18 H 0.97001 * 125.92929 * 180.02562 * 17 16 15 19 19 N 1.40070 * 108.14498 * 0.02562 * 17 16 15 20 20 C 1.31625 * 108.10718 * 359.73431 * 19 17 16 21 21 C 1.48402 * 126.04236 * 180.26907 * 20 19 17 22 22 C 1.39315 * 120.13204 * 228.08776 * 21 20 19 23 23 C 1.38010 * 119.89984 * 179.69975 * 22 21 20 24 24 C 1.38353 * 120.17234 * 0.57199 * 23 22 21 25 25 C 1.38255 * 120.26709 * 359.72276 * 24 23 22 26 26 C 1.38281 * 120.09153 * 359.97438 * 25 24 23 27 27 F 1.35101 * 120.08263 * 180.02562 * 26 25 24 28 28 C 1.53045 * 109.65677 * 61.14814 * 12 11 10 29 29 C 1.46922 * 120.63202 * 151.44796 * 9 7 2 30 30 H 0.97002 * 120.00309 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.58876 * 353.37550 * 10 9 7 32 32 H 1.08997 * 109.58643 * 113.66085 * 10 9 7 33 33 H 1.09004 * 109.50104 * 65.38886 * 11 10 9 34 34 H 1.09007 * 109.49962 * 185.48674 * 11 10 9 35 35 H 1.09001 * 109.33514 * 301.13899 * 12 11 10 36 36 H 1.00900 * 111.00420 * 208.74320 * 13 12 11 37 37 H 1.09005 * 109.46891 * 299.99795 * 14 13 12 38 38 H 1.08994 * 109.47541 * 59.99848 * 14 13 12 39 39 H 1.08000 * 126.00696 * 359.93974 * 16 15 14 40 40 H 1.07995 * 120.04801 * 359.96888 * 22 21 20 41 41 H 1.08003 * 119.91793 * 180.27056 * 23 22 21 42 42 H 1.08002 * 119.86595 * 179.74722 * 24 23 22 43 43 H 1.08000 * 119.95700 * 180.02562 * 25 24 23 44 44 H 1.08996 * 109.49796 * 178.74928 * 28 12 11 45 45 H 1.09005 * 109.49300 * 58.65764 * 28 12 11 46 46 H 1.09003 * 109.58178 * 246.19613 * 29 9 7 47 47 H 1.09000 * 109.58629 * 6.48021 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1038 1.6964 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0587 -1.2203 -0.2589 9 7 1.3654 -2.3652 0.3265 10 6 0.2143 -2.3516 1.2394 11 6 0.4715 -3.3450 2.3768 12 6 0.7919 -4.7199 1.7848 13 7 1.0099 -5.6823 2.8729 14 6 -0.2637 -6.2452 3.3410 15 6 -0.0005 -7.2254 4.4550 16 6 -0.0482 -8.5719 4.3576 17 7 0.2481 -9.0882 5.5696 18 1 0.2883 -10.0315 5.7921 19 7 0.4875 -8.0253 6.4499 20 6 0.3441 -6.9004 5.7815 21 6 0.5130 -5.5316 6.3294 22 6 -0.4517 -4.5566 6.0851 23 6 -0.2929 -3.2869 6.6022 24 6 0.8274 -2.9767 7.3524 25 6 1.7921 -3.9371 7.5940 26 6 1.6411 -5.2146 7.0865 27 9 2.5837 -6.1531 7.3231 28 6 2.0543 -4.6284 0.9244 29 6 1.8114 -3.6501 -0.2291 30 1 -0.4851 0.8400 0.0004 31 1 0.0859 -1.3504 1.6508 32 1 -0.6855 -2.6420 0.6971 33 1 1.3161 -3.0028 2.9748 34 1 -0.4158 -3.4153 3.0061 35 1 -0.0441 -5.0513 1.1689 36 1 1.6450 -6.4128 2.5878 37 1 -0.9029 -5.4420 3.7077 38 1 -0.7598 -6.7566 2.5162 39 1 -0.2827 -9.1362 3.4671 40 1 -1.3246 -4.7953 5.4957 41 1 -1.0428 -2.5321 6.4167 42 1 0.9486 -1.9804 7.7512 43 1 2.6645 -3.6896 8.1806 44 1 2.2926 -5.6131 0.5223 45 1 2.8851 -4.2731 1.5341 46 1 1.0422 -4.0488 -0.8906 47 1 2.7355 -3.5051 -0.7888 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610677314.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:03 Heat of formation + Delta-G solvation = 77.984280 kcal Electronic energy + Delta-G solvation = -30365.988651 eV Core-core repulsion = 26272.093358 eV Total energy + Delta-G solvation = -4093.895292 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.171 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -48.75225 -41.36785 -38.71512 -37.95875 -35.22458 -33.09404 -32.36512 -30.81605 -30.57444 -29.82422 -29.66024 -28.70229 -25.36789 -23.95699 -23.70884 -22.67001 -22.10364 -21.13820 -20.87020 -19.86884 -18.98762 -17.94432 -17.48139 -16.66211 -16.20623 -15.90777 -15.49274 -15.28098 -14.90430 -14.64743 -14.38634 -14.24185 -14.09788 -13.90274 -13.51866 -13.37838 -13.15327 -13.06714 -12.97640 -12.29245 -12.21073 -12.02722 -11.95495 -11.82118 -11.30639 -11.11384 -10.98323 -10.86351 -10.69796 -10.66290 -10.19213 -10.12436 -9.95053 -9.85272 -9.49339 -9.47434 -8.91588 -8.73486 -8.44193 -8.40936 -7.99828 -6.60041 -5.73243 -3.15905 0.97054 1.24936 1.76649 2.56963 2.67092 3.42095 3.47358 3.49414 3.65499 4.23548 4.32736 4.52057 4.54492 4.73563 4.82666 4.93304 5.11941 5.16635 5.26589 5.33527 5.41411 5.49078 5.54268 5.57480 5.66934 5.82218 5.89007 5.96868 5.99594 6.06717 6.10541 6.21131 6.24982 6.36318 6.40663 6.49462 6.50302 6.69194 6.71797 6.84463 6.86570 6.88199 7.06001 7.06828 7.44457 7.48854 7.50890 7.72157 7.77599 7.85742 8.51867 9.27887 9.91141 10.48244 11.35189 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012451 B = 0.003262 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.215934 B = 8581.702070 C = 9915.924338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.003 3.997 3 Si 0.901 3.099 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.251 4.251 8 H 0.063 0.937 9 N -0.591 5.591 10 C 0.171 3.829 11 C -0.121 4.121 12 C 0.098 3.902 13 N -0.680 5.680 14 C 0.134 3.866 15 C -0.210 4.210 16 C 0.059 3.941 17 N -0.476 5.476 18 H 0.440 0.560 19 N -0.278 5.278 20 C 0.136 3.864 21 C -0.034 4.034 22 C -0.059 4.059 23 C -0.126 4.126 24 C -0.083 4.083 25 C -0.157 4.157 26 C 0.122 3.878 27 F -0.134 7.134 28 C -0.132 4.132 29 C 0.149 3.851 30 H 0.253 0.747 31 H 0.087 0.913 32 H 0.013 0.987 33 H 0.059 0.941 34 H 0.044 0.956 35 H 0.033 0.967 36 H 0.332 0.668 37 H 0.080 0.920 38 H 0.032 0.968 39 H 0.177 0.823 40 H 0.132 0.868 41 H 0.133 0.867 42 H 0.132 0.868 43 H 0.134 0.866 44 H 0.044 0.956 45 H 0.065 0.935 46 H 0.014 0.986 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.443 -15.694 12.860 20.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.195 4.195 3 Si 0.731 3.269 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.380 4.380 8 H 0.081 0.919 9 N -0.314 5.314 10 C 0.045 3.955 11 C -0.160 4.160 12 C -0.011 4.011 13 N -0.310 5.310 14 C 0.005 3.995 15 C -0.222 4.222 16 C -0.089 4.089 17 N -0.184 5.184 18 H 0.283 0.717 19 N -0.102 5.102 20 C -0.030 4.030 21 C -0.037 4.037 22 C -0.079 4.079 23 C -0.144 4.144 24 C -0.102 4.102 25 C -0.176 4.176 26 C 0.102 3.898 27 F -0.113 7.113 28 C -0.172 4.172 29 C 0.021 3.979 30 H 0.063 0.937 31 H 0.105 0.895 32 H 0.031 0.969 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.051 0.949 36 H 0.150 0.850 37 H 0.098 0.902 38 H 0.050 0.950 39 H 0.194 0.806 40 H 0.150 0.850 41 H 0.151 0.849 42 H 0.150 0.850 43 H 0.152 0.848 44 H 0.063 0.937 45 H 0.084 0.916 46 H 0.032 0.968 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.233 -15.649 14.439 21.409 hybrid contribution 0.268 -0.229 -1.493 1.534 sum -1.966 -15.878 12.945 20.581 Atomic orbital electron populations 1.70012 1.05222 1.25468 1.54166 1.25026 0.95275 0.98281 1.00958 0.86389 0.78921 0.83445 0.78130 1.20975 1.21665 1.20999 1.19146 0.92195 0.84759 1.41944 0.91891 1.44028 1.35242 1.01626 1.50488 1.20790 0.88274 0.98174 0.88264 1.22164 1.00114 0.94397 0.99375 1.21477 0.96714 0.93089 0.89833 1.60610 1.11798 1.19108 1.39523 1.20221 0.92249 0.94497 0.92575 1.20086 1.13580 0.93051 0.95452 1.22335 1.01434 0.94570 0.90525 1.46157 1.56287 1.08762 1.07243 0.71651 1.77646 1.23538 0.93521 1.15448 1.20322 0.99088 0.91502 0.92137 1.17653 0.95231 0.90755 1.00062 1.20967 0.97730 0.91948 0.97234 1.21129 0.98580 0.96422 0.98242 1.21068 0.93039 0.98926 0.97117 1.21038 1.01522 0.91759 1.03294 1.17637 0.87014 0.86658 0.98531 1.91500 1.62905 1.64280 1.92581 1.22192 0.97582 0.98743 0.98654 1.20847 0.97501 0.86988 0.92526 0.93676 0.89473 0.96890 0.92214 0.93767 0.94872 0.85022 0.90202 0.95000 0.80641 0.85007 0.84905 0.84976 0.84774 0.93690 0.91583 0.96798 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.15 11.17 55.49 0.62 -25.53 16 2 C 0.00 0.08 4.94 -17.43 -0.09 0.00 16 3 Si 0.90 21.75 29.58 -169.99 -5.03 16.72 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.25 -6.93 9.58 -15.06 -0.14 -7.07 16 8 H 0.06 1.71 7.88 -52.48 -0.41 1.30 16 9 N -0.59 -14.86 2.99 -172.33 -0.52 -15.38 16 10 C 0.17 4.07 5.29 -3.71 -0.02 4.05 16 11 C -0.12 -2.33 5.60 -26.59 -0.15 -2.47 16 12 C 0.10 1.63 2.45 -67.65 -0.17 1.47 16 13 N -0.68 -9.76 6.30 -107.93 -0.68 -10.44 16 14 C 0.13 1.67 5.55 -4.98 -0.03 1.64 16 15 C -0.21 -2.52 5.61 -104.75 -0.59 -3.11 16 16 C 0.06 0.54 11.87 -17.27 -0.20 0.34 16 17 N -0.48 -4.59 7.35 30.42 0.22 -4.36 16 18 H 0.44 2.62 8.96 -182.62 -1.64 0.99 16 19 N -0.28 -3.81 12.57 33.43 0.42 -3.39 16 20 C 0.14 1.88 6.33 -82.78 -0.52 1.35 16 21 C -0.03 -0.47 5.70 -104.84 -0.60 -1.07 16 22 C -0.06 -0.73 8.86 -39.26 -0.35 -1.08 16 23 C -0.13 -1.40 10.03 -39.62 -0.40 -1.80 16 24 C -0.08 -0.90 10.04 -39.53 -0.40 -1.30 16 25 C -0.16 -1.89 10.02 -39.56 -0.40 -2.28 16 26 C 0.12 1.73 7.28 -39.09 -0.28 1.45 16 27 F -0.13 -2.08 16.68 2.25 0.04 -2.05 16 28 C -0.13 -2.31 5.37 -26.61 -0.14 -2.45 16 29 C 0.15 3.13 6.52 -3.71 -0.02 3.10 16 30 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.09 2.33 6.06 -51.93 -0.31 2.01 16 32 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.04 0.78 7.42 -51.92 -0.39 0.39 16 35 H 0.03 0.57 7.80 -51.93 -0.40 0.16 16 36 H 0.33 4.51 8.32 -39.29 -0.33 4.18 16 37 H 0.08 1.03 5.37 -51.93 -0.28 0.75 16 38 H 0.03 0.36 8.04 -51.93 -0.42 -0.06 16 39 H 0.18 0.98 8.06 -52.49 -0.42 0.55 16 40 H 0.13 1.45 6.72 -52.49 -0.35 1.10 16 41 H 0.13 1.23 8.06 -52.48 -0.42 0.80 16 42 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 43 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 44 H 0.04 0.67 8.10 -51.93 -0.42 0.25 16 45 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 46 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.05 1.11 7.93 -51.93 -0.41 0.70 16 LS Contribution 384.69 15.07 5.80 5.80 Total: -1.00 -32.83 384.69 -11.50 -44.33 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -7.88 Total: 3.53 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -4.50 Total: -9.24 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: 0.07 Total: -59.09 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.83 -11.50 -44.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610677314.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.317 kcal (2) G-P(sol) polarization free energy of solvation -32.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds