Wall clock time and date at job start Wed Apr 1 2020 04:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86805 * 120.00205 * 2 1 4 4 H 1.48502 * 109.46784 * 240.00531 * 3 2 1 5 5 H 1.48493 * 109.47072 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47182 * 120.00434 * 3 2 1 7 7 C 1.38810 * 120.00099 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00418 * 163.96229 * 7 2 1 9 9 N 1.36941 * 119.99938 * 343.96660 * 7 2 1 10 10 C 1.46923 * 120.62590 * 331.46403 * 9 7 2 11 11 C 1.53189 * 108.89379 * 233.51573 * 10 9 7 12 12 C 1.53075 * 109.29902 * 305.58194 * 11 10 9 13 13 N 1.46894 * 109.45739 * 181.24192 * 12 11 10 14 14 C 1.46896 * 111.00021 * 84.79002 * 13 12 11 15 15 C 1.50703 * 109.47325 * 180.02562 * 14 13 12 16 16 C 1.35086 * 126.07773 * 255.30861 * 15 14 13 17 17 N 1.35030 * 107.97940 * 179.97438 * 16 15 14 18 18 H 0.97001 * 125.92929 * 180.02562 * 17 16 15 19 19 N 1.40070 * 108.14498 * 0.02562 * 17 16 15 20 20 C 1.31625 * 108.10718 * 359.73431 * 19 17 16 21 21 C 1.48402 * 126.04236 * 180.26907 * 20 19 17 22 22 C 1.39315 * 120.13204 * 228.08776 * 21 20 19 23 23 C 1.38010 * 119.89984 * 179.69975 * 22 21 20 24 24 C 1.38353 * 120.17234 * 0.57199 * 23 22 21 25 25 C 1.38255 * 120.26709 * 359.72276 * 24 23 22 26 26 C 1.38281 * 120.09153 * 359.97438 * 25 24 23 27 27 F 1.35101 * 120.08263 * 180.02562 * 26 25 24 28 28 C 1.53045 * 109.65677 * 61.14814 * 12 11 10 29 29 C 1.46922 * 120.63202 * 151.44796 * 9 7 2 30 30 H 0.97002 * 120.00309 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.58876 * 353.37550 * 10 9 7 32 32 H 1.08997 * 109.58643 * 113.66085 * 10 9 7 33 33 H 1.09004 * 109.50104 * 65.38886 * 11 10 9 34 34 H 1.09007 * 109.49962 * 185.48674 * 11 10 9 35 35 H 1.09001 * 109.33514 * 301.13899 * 12 11 10 36 36 H 1.00900 * 111.00420 * 208.74320 * 13 12 11 37 37 H 1.09005 * 109.46891 * 299.99795 * 14 13 12 38 38 H 1.08994 * 109.47541 * 59.99848 * 14 13 12 39 39 H 1.08000 * 126.00696 * 359.93974 * 16 15 14 40 40 H 1.07995 * 120.04801 * 359.96888 * 22 21 20 41 41 H 1.08003 * 119.91793 * 180.27056 * 23 22 21 42 42 H 1.08002 * 119.86595 * 179.74722 * 24 23 22 43 43 H 1.08000 * 119.95700 * 180.02562 * 25 24 23 44 44 H 1.08996 * 109.49796 * 178.74928 * 28 12 11 45 45 H 1.09005 * 109.49300 * 58.65764 * 28 12 11 46 46 H 1.09003 * 109.58178 * 246.19613 * 29 9 7 47 47 H 1.09000 * 109.58629 * 6.48021 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1038 1.6964 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0587 -1.2203 -0.2589 9 7 1.3654 -2.3652 0.3265 10 6 0.2143 -2.3516 1.2394 11 6 0.4715 -3.3450 2.3768 12 6 0.7919 -4.7199 1.7848 13 7 1.0099 -5.6823 2.8729 14 6 -0.2637 -6.2452 3.3410 15 6 -0.0005 -7.2254 4.4550 16 6 -0.0482 -8.5719 4.3576 17 7 0.2481 -9.0882 5.5696 18 1 0.2883 -10.0315 5.7921 19 7 0.4875 -8.0253 6.4499 20 6 0.3441 -6.9004 5.7815 21 6 0.5130 -5.5316 6.3294 22 6 -0.4517 -4.5566 6.0851 23 6 -0.2929 -3.2869 6.6022 24 6 0.8274 -2.9767 7.3524 25 6 1.7921 -3.9371 7.5940 26 6 1.6411 -5.2146 7.0865 27 9 2.5837 -6.1531 7.3231 28 6 2.0543 -4.6284 0.9244 29 6 1.8114 -3.6501 -0.2291 30 1 -0.4851 0.8400 0.0004 31 1 0.0859 -1.3504 1.6508 32 1 -0.6855 -2.6420 0.6971 33 1 1.3161 -3.0028 2.9748 34 1 -0.4158 -3.4153 3.0061 35 1 -0.0441 -5.0513 1.1689 36 1 1.6450 -6.4128 2.5878 37 1 -0.9029 -5.4420 3.7077 38 1 -0.7598 -6.7566 2.5162 39 1 -0.2827 -9.1362 3.4671 40 1 -1.3246 -4.7953 5.4957 41 1 -1.0428 -2.5321 6.4167 42 1 0.9486 -1.9804 7.7512 43 1 2.6645 -3.6896 8.1806 44 1 2.2926 -5.6131 0.5223 45 1 2.8851 -4.2731 1.5341 46 1 1.0422 -4.0488 -0.8906 47 1 2.7355 -3.5051 -0.7888 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610677314.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:02 Heat of formation + Delta-G solvation = 57.496698 kcal Electronic energy + Delta-G solvation = -30366.877059 eV Core-core repulsion = 26272.093358 eV Total energy + Delta-G solvation = -4094.783701 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.171 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.82818 -42.20544 -39.62640 -39.47405 -36.69675 -34.37147 -33.67463 -32.20556 -31.59488 -31.44014 -30.55958 -30.09116 -26.90603 -25.38820 -24.61999 -23.75696 -23.62263 -22.73314 -21.74329 -20.82069 -20.54084 -18.82968 -18.57044 -18.44215 -17.18335 -16.90452 -16.77999 -16.54467 -16.25329 -15.90538 -15.66964 -15.27451 -15.24646 -15.14193 -15.06411 -14.69139 -14.62245 -14.18454 -14.00924 -13.66811 -13.62662 -13.23199 -13.16028 -12.92215 -12.82816 -12.68235 -12.52400 -12.39522 -12.04286 -12.01667 -11.81358 -11.72405 -11.67018 -11.18685 -11.08355 -10.80716 -10.49234 -9.82424 -9.64355 -9.34844 -9.12446 -8.61973 -7.82728 -5.28307 0.05205 0.31557 0.98030 1.49098 1.51558 1.58245 1.67489 1.96027 2.54908 2.74350 3.29350 3.33473 3.39744 3.52144 3.76924 3.85446 3.99252 4.04253 4.11584 4.20868 4.31236 4.37999 4.42564 4.49489 4.52695 4.63442 4.71506 4.79102 4.79892 4.93920 4.98231 5.05501 5.09106 5.16619 5.17056 5.20466 5.22914 5.30846 5.36260 5.46830 5.47884 5.59470 5.60710 5.70572 5.85520 5.98200 6.29748 6.42610 6.44619 6.62622 6.68893 7.20580 7.92142 8.43454 9.23270 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012451 B = 0.003262 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.215934 B = 8581.702070 C = 9915.924338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.047 4.047 3 Si 0.964 3.036 4 H -0.277 1.277 5 H -0.292 1.292 6 H -0.280 1.280 7 C -0.265 4.265 8 H 0.062 0.938 9 N -0.611 5.611 10 C 0.180 3.820 11 C -0.103 4.103 12 C 0.110 3.890 13 N -0.682 5.682 14 C 0.140 3.860 15 C -0.234 4.234 16 C 0.085 3.915 17 N -0.464 5.464 18 H 0.455 0.545 19 N -0.318 5.318 20 C 0.118 3.882 21 C -0.048 4.048 22 C -0.069 4.069 23 C -0.128 4.128 24 C -0.085 4.085 25 C -0.161 4.161 26 C 0.090 3.910 27 F -0.149 7.149 28 C -0.119 4.119 29 C 0.144 3.856 30 H 0.250 0.750 31 H 0.052 0.948 32 H -0.005 1.005 33 H 0.040 0.960 34 H 0.060 0.940 35 H 0.036 0.964 36 H 0.341 0.659 37 H 0.070 0.930 38 H 0.051 0.949 39 H 0.220 0.780 40 H 0.141 0.859 41 H 0.153 0.847 42 H 0.159 0.841 43 H 0.150 0.850 44 H 0.080 0.920 45 H 0.051 0.949 46 H 0.015 0.985 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.408 -17.081 12.760 21.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.242 4.242 3 Si 0.792 3.208 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.395 4.395 8 H 0.080 0.920 9 N -0.334 5.334 10 C 0.054 3.946 11 C -0.143 4.143 12 C 0.001 3.999 13 N -0.314 5.314 14 C 0.011 3.989 15 C -0.246 4.246 16 C -0.064 4.064 17 N -0.173 5.173 18 H 0.302 0.698 19 N -0.142 5.142 20 C -0.047 4.047 21 C -0.051 4.051 22 C -0.088 4.088 23 C -0.146 4.146 24 C -0.103 4.103 25 C -0.179 4.179 26 C 0.070 3.930 27 F -0.128 7.128 28 C -0.158 4.158 29 C 0.018 3.982 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.013 0.987 33 H 0.059 0.941 34 H 0.078 0.922 35 H 0.054 0.946 36 H 0.160 0.840 37 H 0.089 0.911 38 H 0.069 0.931 39 H 0.237 0.763 40 H 0.158 0.842 41 H 0.170 0.830 42 H 0.177 0.823 43 H 0.168 0.832 44 H 0.099 0.901 45 H 0.070 0.930 46 H 0.033 0.967 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.180 -17.086 14.357 22.424 hybrid contribution 0.233 0.122 -1.475 1.498 sum -1.948 -16.964 12.882 21.390 Atomic orbital electron populations 1.70160 1.06516 1.25820 1.55369 1.25743 0.96044 1.01243 1.01197 0.85404 0.77663 0.79508 0.78250 1.20254 1.21797 1.20571 1.19459 0.92449 0.86131 1.41510 0.92033 1.44297 1.35373 1.02468 1.51287 1.20574 0.87427 0.97514 0.89083 1.21884 0.99990 0.94931 0.97466 1.21191 0.96322 0.92218 0.90181 1.60454 1.13285 1.19456 1.38198 1.20170 0.91051 0.94531 0.93189 1.20104 1.15695 0.94174 0.94616 1.22931 0.98364 0.93889 0.91207 1.46204 1.55019 1.09063 1.07035 0.69797 1.77575 1.25108 0.94434 1.17085 1.20500 0.99593 0.91472 0.93146 1.17898 0.95435 0.91532 1.00222 1.21151 0.97813 0.92195 0.97622 1.21472 0.99077 0.96491 0.97554 1.21421 0.92435 0.99842 0.96618 1.21312 1.02376 0.91209 1.03034 1.18005 0.87486 0.87324 1.00185 1.91447 1.63495 1.64971 1.92898 1.22014 0.97383 0.99290 0.97150 1.21007 0.97211 0.86087 0.93928 0.94107 0.92997 0.98725 0.94142 0.92162 0.94562 0.84034 0.91128 0.93059 0.76324 0.84176 0.82963 0.82310 0.83238 0.90140 0.93012 0.96683 0.92977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.12 11.17 21.65 0.24 -54.88 16 2 C -0.05 -2.63 4.94 84.86 0.42 -2.21 16 3 Si 0.96 45.13 29.58 68.60 2.03 47.16 16 4 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 7 C -0.27 -14.83 9.58 84.03 0.81 -14.03 16 8 H 0.06 3.38 7.88 -2.91 -0.02 3.35 16 9 N -0.61 -31.02 2.99 -699.12 -2.09 -33.12 16 10 C 0.18 8.72 5.29 86.36 0.46 9.18 16 11 C -0.10 -3.93 5.60 30.68 0.17 -3.76 16 12 C 0.11 3.49 2.45 44.96 0.11 3.60 16 13 N -0.68 -18.06 6.30 -495.38 -3.12 -21.18 16 14 C 0.14 3.13 5.55 85.56 0.47 3.60 16 15 C -0.23 -5.11 5.61 -19.95 -0.11 -5.23 16 16 C 0.08 1.27 11.87 83.48 0.99 2.26 16 17 N -0.46 -7.87 7.35 -57.68 -0.42 -8.29 16 18 H 0.45 4.30 8.96 -213.34 -1.91 2.38 16 19 N -0.32 -8.48 12.57 -48.16 -0.61 -9.08 16 20 C 0.12 3.19 6.33 42.53 0.27 3.46 16 21 C -0.05 -1.34 5.70 -20.00 -0.11 -1.45 16 22 C -0.07 -1.65 8.86 22.48 0.20 -1.45 16 23 C -0.13 -2.74 10.03 22.24 0.22 -2.51 16 24 C -0.09 -1.75 10.04 22.30 0.22 -1.53 16 25 C -0.16 -3.81 10.02 22.28 0.22 -3.59 16 26 C 0.09 2.60 7.28 22.59 0.16 2.77 16 27 F -0.15 -4.78 16.68 44.97 0.75 -4.03 16 28 C -0.12 -3.93 5.37 30.67 0.16 -3.77 16 29 C 0.14 5.94 6.52 86.36 0.56 6.50 16 30 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 31 H 0.05 2.86 6.06 -2.39 -0.01 2.85 16 32 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 33 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.06 2.08 7.42 -2.38 -0.02 2.06 16 35 H 0.04 1.15 7.80 -2.39 -0.02 1.13 16 36 H 0.34 8.22 8.32 -89.69 -0.75 7.47 16 37 H 0.07 1.70 5.37 -2.38 -0.01 1.69 16 38 H 0.05 0.96 8.04 -2.39 -0.02 0.95 16 39 H 0.22 1.25 8.06 -2.91 -0.02 1.22 16 40 H 0.14 3.01 6.72 -2.91 -0.02 2.99 16 41 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 42 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 43 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 44 H 0.08 2.12 8.10 -2.39 -0.02 2.10 16 45 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 46 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.05 2.13 7.93 -2.39 -0.02 2.11 16 Total: -1.00 -73.36 384.69 0.37 -73.00 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -1.64 Total: 18.57 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: 5.23 Total: -8.15 kcal Atomic # 7 Polarization: -120.55 SS G_CDS: -6.00 Total: -126.55 kcal Atomic # 9 Polarization: -4.78 SS G_CDS: 0.75 Total: -4.03 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -73.36 0.37 -73.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610677314.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.492 kcal (2) G-P(sol) polarization free energy of solvation -73.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds