Wall clock time and date at job start Wed Apr 1 2020 04:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99898 * 2 1 4 4 H 1.48512 * 109.47042 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47173 * 299.99430 * 3 2 1 6 6 H 1.48497 * 109.47224 * 59.99944 * 3 2 1 7 7 C 1.37881 * 120.00209 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00186 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99985 * 0.02562 * 7 2 1 10 10 N 1.46894 * 109.47134 * 179.97438 * 9 7 2 11 11 C 1.46954 * 110.99877 * 169.99823 * 10 9 7 12 12 C 1.53051 * 109.36623 * 183.18975 * 11 10 9 13 13 N 1.46957 * 109.36529 * 301.60200 * 12 11 10 14 14 C 1.46904 * 111.00363 * 183.19051 * 13 12 11 15 15 C 1.50693 * 109.47314 * 169.99669 * 14 13 12 16 16 C 1.39929 * 125.87577 * 94.99611 * 15 14 13 17 17 C 1.35319 * 107.93023 * 180.02562 * 16 15 14 18 18 N 1.35227 * 107.71151 * 0.26686 * 17 16 15 19 19 C 1.40178 * 126.05045 * 179.73265 * 18 17 16 20 20 C 1.38868 * 120.05258 * 179.97438 * 19 18 17 21 21 C 1.38111 * 119.98745 * 180.02562 * 20 19 18 22 22 C 1.38270 * 120.08877 * 359.97438 * 21 20 19 23 23 C 1.38487 * 120.10723 * 359.97438 * 22 21 20 24 24 F 1.35101 * 119.99109 * 180.02562 * 23 22 21 25 25 C 1.38365 * 120.01515 * 359.76106 * 23 22 21 26 26 N 1.30867 * 125.88056 * 275.02271 * 15 14 13 27 27 C 1.46954 * 110.88171 * 59.31703 * 13 12 11 28 28 C 1.46948 * 111.00332 * 293.79915 * 10 9 7 29 29 H 0.96999 * 120.00479 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46889 * 59.99873 * 9 7 2 31 31 H 1.09005 * 109.46819 * 300.00313 * 9 7 2 32 32 H 1.09001 * 109.48990 * 63.22349 * 11 10 9 33 33 H 1.09000 * 109.49611 * 303.15685 * 11 10 9 34 34 H 1.09005 * 109.49261 * 181.63648 * 12 11 10 35 35 H 1.09003 * 109.49109 * 61.56647 * 12 11 10 36 36 H 1.09000 * 109.46824 * 49.99613 * 14 13 12 37 37 H 1.09003 * 109.46462 * 290.00172 * 14 13 12 38 38 H 1.07998 * 126.03379 * 0.05998 * 16 15 14 39 39 H 1.08002 * 126.13971 * 179.97438 * 17 16 15 40 40 H 1.08006 * 120.00830 * 0.02562 * 20 19 18 41 41 H 1.07993 * 119.95666 * 180.02562 * 21 20 19 42 42 H 1.07995 * 119.94839 * 180.02562 * 22 21 20 43 43 H 1.07998 * 120.04791 * 180.27788 * 25 23 22 44 44 H 1.09000 * 109.48640 * 60.64454 * 27 13 12 45 45 H 1.08995 * 109.48726 * 180.71515 * 27 13 12 46 46 H 1.09002 * 109.49187 * 296.78348 * 28 10 9 47 47 H 1.09005 * 109.49090 * 56.82194 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5210 -4.8940 0.2388 12 6 2.5565 -6.0187 0.3105 13 7 3.3196 -6.0593 -0.9448 14 6 4.2742 -7.1759 -0.9448 15 6 4.8582 -7.3375 -2.3245 16 6 6.0643 -6.7885 -2.7740 17 6 6.2362 -7.1603 -4.0637 18 7 5.1716 -7.9141 -4.4200 19 6 4.9557 -8.4947 -5.6775 20 6 3.8131 -9.2496 -5.9080 21 6 3.6021 -9.8215 -7.1473 22 6 4.5268 -9.6431 -8.1596 23 6 5.6671 -8.8902 -7.9342 24 9 6.5688 -8.7170 -8.9252 25 6 5.8803 -8.3107 -6.6960 26 7 4.3245 -8.0150 -3.3088 27 6 4.0043 -4.7810 -1.1830 28 6 2.9687 -3.6563 -1.2547 29 1 -0.4851 0.8400 -0.0004 30 1 0.6248 -2.5571 -0.8897 31 1 0.6241 -2.5567 0.8903 32 1 0.8254 -5.0915 -0.5768 33 1 0.9734 -4.8434 1.1799 34 1 2.0486 -6.9718 0.4582 35 1 3.2357 -5.8353 1.1431 36 1 3.7602 -8.0933 -0.6581 37 1 5.0740 -6.9700 -0.2334 38 1 6.7390 -6.1766 -2.1938 39 1 7.0713 -6.8978 -4.6963 40 1 3.0897 -9.3894 -5.1183 41 1 2.7131 -10.4081 -7.3262 42 1 4.3593 -10.0910 -9.1280 43 1 6.7671 -7.7197 -6.5210 44 1 4.6998 -4.5835 -0.3673 45 1 4.5519 -4.8317 -2.1241 46 1 2.2897 -3.8397 -2.0873 47 1 3.4764 -2.7030 -1.4027 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611175513.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:34 Heat of formation + Delta-G solvation = 83.605179 kcal Electronic energy + Delta-G solvation = -28830.159694 eV Core-core repulsion = 24736.508142 eV Total energy + Delta-G solvation = -4093.651552 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.171 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.37962 -41.84372 -39.34364 -38.60563 -35.41288 -33.75584 -32.43862 -31.36263 -30.61152 -30.43611 -29.66179 -28.30356 -26.26958 -24.25791 -23.75749 -23.13556 -22.60502 -21.38646 -21.11464 -19.82281 -19.12227 -18.88621 -16.77986 -16.63177 -16.38854 -16.30486 -16.19924 -15.98104 -15.28599 -15.02984 -14.56891 -14.48191 -14.40340 -14.17388 -14.11896 -13.69373 -13.59195 -13.40022 -13.27508 -12.73164 -12.53252 -12.41638 -12.05921 -11.96033 -11.81901 -11.67112 -11.18777 -10.88189 -10.85860 -10.70704 -10.59206 -10.51523 -10.35147 -10.22812 -9.72172 -9.42625 -9.32986 -9.14740 -8.44345 -8.40914 -8.13165 -7.20239 -6.01242 -4.02474 0.32030 0.62944 1.80184 1.98983 2.47130 3.15149 3.31528 3.38802 3.43393 3.72262 4.01769 4.16152 4.34296 4.38223 4.43564 4.46869 4.59553 4.78105 4.94430 4.98692 5.06105 5.23470 5.31471 5.34541 5.41303 5.46131 5.51114 5.54951 5.58484 5.69476 5.78183 5.81580 5.85917 5.88717 5.93585 6.10449 6.20026 6.22294 6.36314 6.46300 6.62034 6.72200 6.80707 7.17967 7.19971 7.36787 7.39999 7.44358 7.82065 8.11228 8.23144 8.57516 9.05389 9.61651 11.09717 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.013688 B = 0.002094 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.042920 B =13368.018267 C =14173.418972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.054 3.946 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.505 4.505 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.538 5.538 11 C 0.056 3.944 12 C 0.063 3.937 13 N -0.533 5.533 14 C 0.132 3.868 15 C 0.105 3.895 16 C -0.246 4.246 17 C 0.049 3.951 18 N -0.332 5.332 19 C 0.202 3.798 20 C -0.132 4.132 21 C -0.063 4.063 22 C -0.169 4.169 23 C 0.128 3.872 24 F -0.133 7.133 25 C -0.185 4.185 26 N -0.266 5.266 27 C 0.058 3.942 28 C 0.068 3.932 29 H 0.260 0.740 30 H -0.009 1.009 31 H 0.030 0.970 32 H 0.030 0.970 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.042 0.958 36 H 0.089 0.911 37 H 0.058 0.942 38 H 0.156 0.844 39 H 0.177 0.823 40 H 0.146 0.854 41 H 0.143 0.857 42 H 0.141 0.859 43 H 0.142 0.858 44 H 0.040 0.960 45 H 0.071 0.929 46 H 0.027 0.973 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.382 -22.054 -12.115 28.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.544 4.544 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.263 5.263 11 C -0.073 4.073 12 C -0.065 4.065 13 N -0.259 5.259 14 C 0.002 3.998 15 C -0.064 4.064 16 C -0.274 4.274 17 C -0.091 4.091 18 N -0.107 5.107 19 C 0.109 3.891 20 C -0.152 4.152 21 C -0.082 4.082 22 C -0.189 4.189 23 C 0.108 3.892 24 F -0.112 7.112 25 C -0.207 4.207 26 N -0.085 5.085 27 C -0.070 4.070 28 C -0.060 4.060 29 H 0.070 0.930 30 H 0.009 0.991 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.060 0.940 36 H 0.107 0.893 37 H 0.076 0.924 38 H 0.173 0.827 39 H 0.194 0.806 40 H 0.164 0.836 41 H 0.161 0.839 42 H 0.159 0.841 43 H 0.160 0.840 44 H 0.059 0.941 45 H 0.089 0.911 46 H 0.045 0.955 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 11.291 -22.642 -12.557 28.246 hybrid contribution 1.298 1.631 -0.049 2.085 sum 12.589 -21.011 -12.607 27.548 Atomic orbital electron populations 1.69969 1.06057 1.26626 1.51162 1.24999 0.94863 0.99316 0.95525 0.86457 0.80061 0.83499 0.77485 1.19679 1.21139 1.21032 1.21192 0.93469 0.89950 1.49803 0.91882 1.19705 0.90071 0.87330 0.96107 1.62287 1.28117 1.02750 1.33183 1.22061 0.94740 0.89932 1.00532 1.22167 0.96062 0.98801 0.89426 1.62103 1.25308 1.03024 1.35461 1.20392 0.94847 0.96178 0.88349 1.22392 0.93306 0.94981 0.95765 1.21595 1.00706 1.09590 0.95496 1.22584 0.93117 0.96263 0.97156 1.45808 1.16907 1.39492 1.08488 1.17160 0.95239 0.95055 0.81695 1.21039 0.96912 0.98410 0.98838 1.20943 0.98611 0.97361 0.91279 1.21218 0.94131 1.01956 1.01553 1.17217 0.88468 0.98669 0.84860 1.91534 1.66045 1.93823 1.59779 1.20634 1.01965 1.06106 0.91964 1.77480 1.14498 1.24128 0.92392 1.22299 0.96128 0.88325 1.00260 1.21971 0.95442 0.97370 0.91243 0.93002 0.99113 0.95193 0.95130 0.90892 0.90988 0.94018 0.89284 0.92422 0.82685 0.80574 0.83586 0.83887 0.84148 0.83998 0.94135 0.91079 0.95508 0.89613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 2 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.51 -14.26 8.47 -34.44 -0.29 -14.56 16 8 H 0.06 1.76 7.13 -52.49 -0.37 1.38 16 9 C 0.19 5.10 4.72 -4.98 -0.02 5.08 16 10 N -0.54 -11.79 4.70 -235.91 -1.11 -12.90 16 11 C 0.06 1.04 5.61 -3.77 -0.02 1.02 16 12 C 0.06 0.94 5.61 -3.77 -0.02 0.92 16 13 N -0.53 -7.97 4.70 -235.91 -1.11 -9.08 16 14 C 0.13 1.59 5.52 -4.98 -0.03 1.56 16 15 C 0.10 1.32 5.94 -82.37 -0.49 0.83 16 16 C -0.25 -2.63 9.67 -39.99 -0.39 -3.02 16 17 C 0.05 0.49 10.80 -17.10 -0.18 0.30 16 18 N -0.33 -3.90 3.80 -10.71 -0.04 -3.94 16 19 C 0.20 2.07 6.69 -83.61 -0.56 1.51 16 20 C -0.13 -1.22 9.66 -39.39 -0.38 -1.60 16 21 C -0.06 -0.43 10.04 -39.62 -0.40 -0.83 16 22 C -0.17 -1.17 10.02 -39.48 -0.40 -1.56 16 23 C 0.13 1.06 7.30 -39.44 -0.29 0.78 16 24 F -0.13 -1.18 17.27 2.25 0.04 -1.14 16 25 C -0.18 -1.59 9.43 -39.33 -0.37 -1.96 16 26 N -0.27 -3.64 11.87 33.69 0.40 -3.24 16 27 C 0.06 0.93 5.41 -3.77 -0.02 0.91 16 28 C 0.07 1.38 5.43 -3.77 -0.02 1.36 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 30 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 31 H 0.03 0.84 8.03 -51.93 -0.42 0.42 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 1.30 8.07 -51.93 -0.42 0.88 16 34 H 0.07 0.91 8.07 -51.93 -0.42 0.49 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 0.98 8.03 -51.93 -0.42 0.57 16 37 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 38 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 39 H 0.18 1.10 7.04 -52.49 -0.37 0.73 16 40 H 0.15 1.43 7.70 -52.48 -0.40 1.02 16 41 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 42 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 43 H 0.14 0.97 6.74 -52.49 -0.35 0.61 16 44 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.07 1.08 6.38 -51.93 -0.33 0.75 16 46 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.09 1.83 6.79 -51.93 -0.35 1.48 16 LS Contribution 387.51 15.07 5.84 5.84 Total: -1.00 -32.68 387.51 -11.03 -43.72 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -6.79 Total: -1.94 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -3.98 Total: -7.82 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: -1.12 Total: -55.34 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.04 Total: -1.14 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.68 -11.03 -43.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611175513.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.321 kcal (2) G-P(sol) polarization free energy of solvation -32.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds